TCONS_00054642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054642
Unique NameTCONS_00054642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054642 ID=TCONS_00054642|Name=TCONS_00054642|organism=Clytia hemisphaerica|type=transcript|length=1104bp
GTANATATTCAACTACCTCAATCATACTTCACACAGGATCCACGAGGAAA
GCATCCATACTTTTCATACGACTACGATACGTGTGTATCAAAAGGTTCGA
TGATGTTGAAACCCAGATATAACTTGAAACGGAAACCATCCAGGCTGAGA
AATAGTTTTGGCGAGAGAGGTTAAAGAGCTATGATAATGCTCATTTATTG
ATTGGATGCGCGAGGTATCCTTAATTTGGTGACGTATATCAATATTGGTA
TACTGGATATATCATCGGAATATTACTTGATATTATTATATTGAGCCACC
CTATAAATCgcagtgttaaaagttcttccgcCCTTGATGGATTTCCTCTC
AGCGAAGTAGAGTCTTTTCCGTCTTAAATCTCTGAacaattcaccaaaat
ttcaagattttgtgcTGATTTGCTATTTTGTGTCTAAAGCGAAACACCTT
GCATTGACCACTGAAATTTAACCACCCTTAAAAGGCCTTCACGATGGAGA
AATGGGTATAAAGTCGCGAGATACATATAGTACTCATTATCGTATGTTCG
AAAGCGTCGCCCAAAATTAAGCCTTCGAAAGCGGACCCTTGCAGAAAAGT
TAAggcgaatagaccttttcataaattacctcacgaacatcacttgcctc
gttttgaaattattgccgtgatgattaactcccagcagattttattaaaa
ctactttccattcattaaaaaaatcattttttttctcaagtgACATAATG
Gtaatggtaattgtttgaatacgaggcaagtgatattcgtgacgtaattt
atgaaaaggcccaTTAGAGTAAATCTGAGCGAAAAATGTACAATGacggc
aaaaaaactttgttttgctcactttttacacccactttctctcatttttg
ctcattttgatCCTTACAGGGGAAACCTGATATAAAATGCACCCTTAAGA
GCCGCACCTACGGTACGTTacttaccttgagtgcccctcCCCTCCCgggg
aaatatttattttggtTATTCAAGGGAATCAAAACCCaaagtttataatt
ttttatgcAATTTGTATAGCTTTTAGTTTTTATGGTATAAGAACTGGATA
ACCT
Run BLAST on NCBI

transcript from alignment at scaffold_243:468097..469881-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054642 ID=TCONS_00054642|Name=TCONS_00054642|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at scaffold_243:468097..469881- (Clytia hemisphaerica)
GTANATATTCAACTACCTCAATCATACTTCACACAGGTACGGCTATGTAG
TTTTGTGTTTGGAGTAAAGTATTTTCGTTTCCGTAATCGTAATTTTAAAA
TTTTTTCAGGTAAAGTGATTTGTTCCTTATTCATGATATGCACCATTGCA
ATGACCTCCAGGAACCCAACAGCTGATTGGTTGAAAGTTATGCATTGACT
GACTTTACGTCACTTACAACCAATCAGCTATTGGGTCCATGATGTAATGT
CAGAAGACATTGAAGTGGTGCATATCATGAATAAGGTATTGTAACGAAGC
CAGATGTAAAAGCCTTGGTCTATTCGCTTTAGGTGTGTCTTATTTTACCT
ACCATGTGAATACGCTGGCATGGTTTCTACCACGAATGCAAAAAGATCAT
CATGGGTTGGTTGACTTAAGCCGACTCGATAGCTCAGTATTTTTTAATAT
CCTCTGTCTTATGTATAGTCAAAGAAAACTATAATCATCTTTTTGTTAAC
GCCGGTAAATTATGTTTATTTTCTTTTTTCAAATATAAGGATCCACGAGG
AAAGCATCCATACTTTTCATACGACTACGATTTTTGTTAACGCCAATGAA
TTGTTTTTTTCTTTTTTCAATTATAAGGATCCACGAGGAAAGCATCCATA
CTTTTCATACGACTACGATTTTTGTTAACGCCAATGAATTATGTTTTTTT
CTTTTTTCAATTATAAGGATCCACGAGGAAAGCATCCATACTTTTCATAC
GACTACGATACGTGTGTATCAAAAGGTTCGATGATGTTGAAACCCAGATA
TAACTTGAAACGGAAACCATCCAGGCTGAGAAATAGTTTTGGCGAGAGAG
GTTAAAGAGCTATGATAATGCTCATTTATTGATTGGATGCGCGAGGTATC
CTTAATTTGGTGACGTATATCAATATTGGTATACTGGATATATCATCGGA
ATATTACTTGATATTATTATATTGAGCCACCCTATAAATCGCAGTGTTAA
AAGTTCTTCCGCCCTTGATGGATTTCCTCTCAGCGAAGTAGAGTCTTTTC
CGTCTTAAATCTCTGAACAATTCACCAAAATTTCAAGATTTTGTGCTGAT
TTGCTATTTTGTGTCTAAAGCGAAACACCTTGCATTGACCACTGAAATTT
AACCACCCTTAAAAGGCCTTCACGATGGAGAAATGGGTATAAAGTCGCGA
GATACATATAGTACTCATTATCGTATGTTCGAAAGCGTCGCCCAAAATTA
AGCCTTCGAAAGCGGACCCTTGCAGAAAAGTTAAGGCGAATAGACCTTTT
CATAAATTACCTCACGAACATCACTTGCCTCGTTTTGAAATTATTGCCGT
GATGATTAACTCCCAGCAGATTTTATTAAAACTACTTTCCATTCATTAAA
AAAATCATTTTTTTTCTCAAGTGACATAATGGTAATGGTAATTGTTTGAA
TACGAGGCAAGTGATATTCGTGACGTAATTTATGAAAAGGCCCATTAGAG
TAAATCTGAGCGAAAAATGTACAATGACGGCAAAAAAACTTTGTTTTGCT
CACTTTTTACACCCACTTTCTCTCATTTTTGCTCATTTTGATCCTTACAG
GGGAAACCTGATATAAAATGCACCCTTAAGAGCCGCACCTACGGTACGTT
ACTTACCTTGAGTGCCCCTCCCCTCCCGGGGAAATATTTATTTTGGTTAT
TCAAGGGAATCAAAACCCAAAGTTTATAATTTTTTATGCAATTTGTATAG
CTTTTAGTTTTTATGGTATAAGAACTGGATAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034422XLOC_034422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054642-exon-scaffold_243-1575043694:469846..469881TCONS_00054642-exon-scaffold_243-1575043694:469846..469881Clytia hemisphaericaexon
TCONS_00054642-exon-scaffold_243-1575043694:468097..469164TCONS_00054642-exon-scaffold_243-1575043694:468097..469164Clytia hemisphaericaexon
TCONS_00054642-exon-scaffold_243-1510915933:469846..469881TCONS_00054642-exon-scaffold_243-1510915933:469846..469881Clytia hemisphaericaexon
TCONS_00054642-exon-scaffold_243-1510915933:468097..469164TCONS_00054642-exon-scaffold_243-1510915933:468097..469164Clytia hemisphaericaexon
TCONS_00054642-exon-scaffold_243-1491911889:469846..469881TCONS_00054642-exon-scaffold_243-1491911889:469846..469881Clytia hemisphaericaexon
TCONS_00054642-exon-scaffold_243-1491911889:468097..469164TCONS_00054642-exon-scaffold_243-1491911889:468097..469164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:468097..469881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.845197	1.30632	0.926577	1.15614	0.123708	0	0	0	0.79505	0.994834	1.37718	0.493342	0.848208	0.237873	1.53078	1.73617	0.990113	1.88273	0.722764	0.497291	0.926757	0.676243	1.10909	0.808181	0	0.126619	0.394533	0.229276	0.84403	0.781612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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