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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054644 ID=TCONS_00054644|Name=TCONS_00054644|organism=Clytia hemisphaerica|type=transcript|length=3184bpRun BLAST on NCBI protein sequence of TCONS_00054644-protein >TCONS_00054644-protein ID=TCONS_00054644-protein|Name=TCONS_00054644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp MTKMDKEELRLWTVEDGQLLFLKQKQMIAISGSCIICCLFGTVEINGKILRun BLAST on NCBI transcript from alignment at scaffold_243:468097..508237- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054644 ID=TCONS_00054644|Name=TCONS_00054644|organism=Clytia hemisphaerica|type=transcript|length=40141bp|location=Sequence derived from alignment at scaffold_243:468097..508237- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:468097..508237- >TCONS_00054644 ID=TCONS_00054644|Name=TCONS_00054644|organism=Clytia hemisphaerica|type=CDS|length=26100bp|location=Sequence derived from alignment at scaffold_243:468097..508237- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054644 vs. Swiss-Prot (Human)
Match: NOL9 (Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Homo sapiens GN=NOL9 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.327e-43 Identity = 182/610 (29.84%), Postives = 284/610 (46.56%), Query Frame = 2
Query: 569 LLFLKQKQMIAISGSCIICCLFGTVEINGKILTENDEEFHDLVXTVEINGKILTENDEEFHDLVSFKGSTLLAIENRNEIEIDKNQLLKK-INGGNRRNRTGLESDFIDKLDKITSCIWVMKKKSALGPVLNQLNGCK---IGRELQFHTEPFEVAV----LKTEKWKKIVD--EQILNSQKNISDQQC-------TVLFCGGKDVGKSSFSKFTVNRLLNKQESVYFLECDCGQTEFTPPAVLSLVKITKPLFGT--THIK-PVKAFFYGYISTKDNPNDYIHLLKELHQFYLNECDTQAPLIVNTQGWVXXXXXXXXXXXXXXXXPSHVVQIQSDQESRNLPFSLDDEVIDTSHGWVTTSESVGSCRQQRSFITLDTVKQTD---------SLHK--GVFT--------RNR----------SITRYFTQMYHHPVDVDQYWIPPPLS---TIKPYVINTSDIALHIMNQNVTEDLMLMAFNVSLVALAKVPDDLVFDSSHSGLRLLKDQPRAAEYLGLAIIRNIEKIDALTTRLY-IITPEPVDVLDQVNVLLKGNIQLSQSYFT--QDPRGKHPYFSYDYDTCVSKGSMML---KPRYNLKRKPSR 2224
LL L +Q SG C + CL+G V++ G +++ + D+ + T + H L + +++ E++ + LLK +N +RR + S + + K+A + G + +P +A+ ++ EK +K + E L++ + + + C +L CG +DVGKS+F+++ +N LLN V +LECD GQTEFTPP +SL+ IT+P+ G TH++ P K +YG S K+N +YI ++K + Y E +PLIVNT GWV GL LLIDL+R+L PSHVVQ +SD S+ +P L + +D G T S++ R+ R D ++ D + HK GV+T RNR SI Y +Q+ Q +P PLS ++ PY + + +AL I + +V +L A N S V L K+ DD+ ++ +L Q + LG I R I+ + RLY I+TP P + L VN LL G I + + G PY + DY+ + S + +P K KP R
Sbjct: 125 LLLLPVEQGFTFSGICRVTCLYGQVQVFGFTISQG-QPAQDIF-------SVYTHSCLSIHALHYSQPE-----KSKKELKREARNLLKSHLNLDDRRWS-------MQNFSPQCSIVLLEHLKTATVNFITSYPGSSYIFVQESPTPQIKPEYLALRSVGIRREKKRKGLQLTESTLSALEELVNVSCEEVDGCPVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGPPFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRE----SPLIVNTMGWVSDQGLLLLIDLIRLLSPSHVVQFRSDH-SKYMP-DLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEFADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQL--------QPPMPKPLSPLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDV---RGYTNGPILLAQTPICDCLGFGICRGID----MEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTVPYVTTDYNFKLPGASEKIGAREPEEAHKEKPYR 693 The following BLAST results are available for this feature:
BLAST of TCONS_00054644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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