TCONS_00054654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054654
Unique NameTCONS_00054654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054654 ID=TCONS_00054654|Name=TCONS_00054654|organism=Clytia hemisphaerica|type=transcript|length=1091bp
TTATCCCCGTCATGAATCCCGATGCTTGCGTTGCGGTAGacatcaaaaga
aaattaagaaaaaacgGCACGCGAAAGGTCTCTGCTCCTCTTTGAAAGTT
GTGTATAAAAGGAGGGGGAGGGAACACAAATCATTTAGCAACTCGAAGAG
TGAAGAAGAACTTGAAGAAGCAAAGAAGAAGTAGAAGATGAATACAATCT
GTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAAGA
TGCGAAGACAAATACCCTGAGAAATGTTACCAACAAGTTGTCGTTGGTAT
CAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATTTCTATTGGAATGTTT
GCCCTAAATCGTGTGGAGCATGTGGTCCCTCCAAAAGAGAAAACACGAAA
CGTTCATGCGACTGCGATAATGTCACTCCTGATTGCGAAGACTATTGTCT
TATGGAACAATTCTGTGATTCCGCATGTAAACAAGGCTTAGCTGGCCCAG
AATGCAACTGTCCAGATCATCCAATTGGCAAAAGAGAAGCACACGCCAAA
AGAAATAATGTCAAACGAGAGTGCGACTGTCACGATTTCGATTGGGATTT
GATTACCCCCGATTGTGAGGATTACTGCGTGTTTCAAGAATTTTGTTCAG
AAGCATGCATTGAGGGTATCGGTGGACCCGAATGCGGTTGTCCCGGCCAC
CCAATCGGCAAAAGAGGAGTTATGGCCGGAAAATACCGACGCACCATGAT
GGCAAGGATTATGAAGGAAAAGAGAAACTCAAAGTAGAGGAGAAAAGAAG
ATGTTCAACCCAGCAAAAAATCGATCACAATCAAACTAGAACGAGAAAAC
TGACATCCGATTAATCCCATTCCACTCAAATAACAACAATAATCAATCGA
TGCTTTTAGCTAGTATACTTAATttcatttaaagatttttgtaatTAATT
CAGTGATATACATCATAAACTTTAGACTTTTTTAGAACGAAAAGATTTGT
ATTTTTTCCAAGTTAATATAAATATAACCACTCGAAATGAACATATAATA
ATAGCTATTCGTGAAGTTATCAATTAGTGTGGAATTAgcag
Run BLAST on NCBI

protein sequence of TCONS_00054654-protein

>TCONS_00054654-protein ID=TCONS_00054654-protein|Name=TCONS_00054654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MNTICVTLSLICIVAAISAERCEDKYPEKCYQQVVVGINGEKRRCGSGDF
YWNVCPKSCGACGPSKRENTKRSCDCDNVTPDCEDYCLMEQFCDSACKQG
LAGPECNCPDHPIGKREAHAKRNNVKRECDCHDFDWDLITPDCEDYCVFQ
EFCSEACIEGIGGPECGCPGHPIGKRGVMAGKYRRTMMARIMKEKRNSK
Run BLAST on NCBI

transcript from alignment at scaffold_243:627561..631547-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054654 ID=TCONS_00054654|Name=TCONS_00054654|organism=Clytia hemisphaerica|type=transcript|length=3987bp|location=Sequence derived from alignment at scaffold_243:627561..631547- (Clytia hemisphaerica)
TTATCCCCGTCATGAATCCCGATGCTTGCGTTGCGGTAGACATCAAAAGA
AAATTAAGAAAAAACGGCACGCGAAAGGTCTCTGCTCCTCTTTGAAAGTT
GTGTATAAAAGGAGGGGGAGGGAACACAAATCATTTAGCAACTCGAAGAG
TGAAGAAGAACTTGAAGAAGCAAAGAAGAAGTAGAAGATGAATACAATCT
GTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAAGT
AAGTATTCAATGATTTTATCTGTAATGTGTATAAGGCATTTGGACCCAAT
TCGCAAAAGGAATTTTATCTTTGTAATGAAATTCATGTAGTAGCGTTGTG
AGAAAAAAAGTCATGATCAATCATGAGCCATAACGTGCTGCGGGCATATT
CAGATCTTTATTTTTCGATATTTCTTGAACCACTTTGTGATTCTATTAAT
TTCACTGAATTCAATGAAAAGAAAGGCAAGCGGATTTACTGATACTGACA
CTGCGTTAGTATCGGAATATGAATCGATGTATTCTCGTTTCTTCTTTGCA
GGATGCGAAGACAAATACCCTGAGAAATGTTACCAACAAGTTGTCGTTGG
TATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATTTCTATTGGAATG
TTTGCCCTAAATCGTGTGGAGCATGTGGTAAGGAACCATAGAAAAATTCT
AATGTAACTTTTTATGAGTATTTGGGTGTAATATTCTAAGATATTATATG
TTAAATACGAGCTCCCAAAAAGCTCTATGTCACCAAAATTTTGGGATTAG
TTCGGCAGCAGCGCCATCGTTATAACTTTACTGAGTTCTATACGTCCAAA
TAAATGTGCAAGTCTTTTGGGAAATTCTATTTGGCAATTTTATCATGATC
ATACCTTTAATGTACATTTTCATAGAACAAGAAATGCGTGACTTGTTTGC
CCAAATTTTCAGGTCCCTCCAAAAGAGAAAACACGAAACGTTCATGCGAC
TGCGATAATGTCACTCCTGATTGCGAAGACTATTGTCTTATGGAACAATT
CTGTGATTCCGCATGTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTC
CAGATCATCCAATTGGCAAAAGAGAAGGTAAAACCATGTTAATAGACATT
TTCATTATTTACGTCACGAGCAACGCTTACCTCGTTTTCAAAATATTGCT
GTGGTAATTTTATTCCCTGGGGAGTTCGCTATTTTAAAAGTAAGAAATGA
AGCATCAAGGGATTTAATCACCTTGGTAACGGTTTCAAAACGAAGCAGTC
GTCGCACTAAAAATAATTTATGAAAAGGCCAATTCCTTTTTCAATTATAC
AGTATGCCCGGAAAAAAAGTGAAACAGATAGTAGTTAAATCTCCAAAAAT
CTATTATCAAATACACTCTTACAAACCTACTGGGAACCCTTATATATCGT
CCCCGGTGGAAAATTATCCTCCAAATTTTGTCCCCCCCCCTGAAAATAAT
CAAATAAACCAATCCTCACTGCAAAATATTCACTATTTTTTCCATCCCCA
ATGAACTTTCTGACTTTAAAACAAAGAATTTAAATCCCCTTTCATAAAAC
ATATATGAATATCAATCCCCATCGAGTTTCAGTCGGTTAATTTTATCCCC
ACTGGCTGAAAAAGTCCTAACGGGTCTGTGAGAAGGGGTGTTCAAATTGG
AGTTTAGACAATCAAACTAATGGAATTTCACTGTTGAATCGTTTAGGTAT
CCAAAAGATATAATTAAAATTGTTTTTTTTAAACTTGTGTATAATTAGGT
ATAAAAGATCTGTTCTGTTTTTTTCTCTTTTTTTGTCTTTGATTTTCTGA
GATATTGAATATTAAGTCAGCACACTGGTTCATTGTGAGAATCTTGTTCA
TTTGCGATGAAATTTCAACCTACTATTTGGAAAAGACCTACATTCTACTC
TAGGCCACCTAAAGTCATGTGATTGATGCACTTATAATGTTGAGGGGGAA
CACACAAAGAATAAAACTTTAATAGTAAAGGAGGGAAATTGTCCAAAAAA
ATCTGTTTTGCACCTTTGTATAAGGTAAGACTATGCTAACAATAAAAACT
TTCTAATTTCCAGCACACGCCAAAAGAAATAATGTCAAACGAGAGTGCGA
CTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGATTACT
GCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCGGTGGA
CCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGTACATT
TTTATGATCATCTTTATGTATCAGTTTTTGCGGGAATTAAATTTGGTGGG
TTTAGCAGTTTTCAGCCAAAATTTTCATCATTTTTTAGTTCTTAAAACGT
AAAATCAGCATTTTCAGGTCAAATACCAAGTAGTCTTCGCATCACCAAAT
TAAATTCCCATCAAAAAATTCTTTTCGGCCAACCAAAAATTAAGGGAACG
CCGAAACACTTAAGGTGTATTTAGAACCTTTTATTCAGTACATCGAAACC
AAAGTAGCTAATCTTGGTAAATATGGACGACATCTTGCGGAACCTTTTTC
TTGTTTCTCTATCAATTATTATTAATTATTAATTATTTATTATTAAGATT
TTTCTCTAGTTTCCATTGGCTATCACACTGTAGTCGAACTTATGTTATTT
TAAGTTTATTCTTGCATAACGAGCATGAATGTCGTTCCTCTACAGCTTTT
CAAATTAGTAGAAACCGAAACTAGAATACCGTAGCGGGACCGTAGCTCTA
GATCGAACATACCTTATCGGGGAAAAAATGTTGGGGGAAAGTGACGAAAA
TTTTGAGGGAGTGACGAAATTTCCCCCCGACGAATTTTTTCCCCGATATT
TTATCACCCGATCAAAACTTTTACCCGGTTTTCCAATCCCGACCAAGATC
TTCCCCGATTTTTTTATTTCAACAGAAAAAAGGATTTCTATCGTAGTTTT
CCATTTTAAACGTTCCATGGATGTTTCTTAACAAAACAAATAAAATGACT
TTCTTTTCAAACGAGTTCTTTTGCCTAAACAACAAGCTTATAGTTAAAAC
TACAATGGTTTGATAAAAAATAACAATAGTAACACAATGTCGGTCGTTGG
TCAAGTCTTTAAAAAATCCAAATATTAACAAAGTTTTTATTTAAAAGATG
TCCCTCATTTCTGGGCATTTTTGACAGCGAGAAAAGGTAGTAGTTTGTAG
CAGTAATTTAATGTTGTGATAAAACTATTGAAACAAATGAGCATTACTAA
AAATCTTGATAATTCCTTTTTATGCTCTATATTTTATCGGAAACATTTAA
AAAATTTGGTCGGGGAAAAGTGACGAATTTGAAATTTTGGTCGGGGGAAA
GTGACGAAAATTCCTCTAGGTGACGAAATTTTTCACCAACGAAAAAAAAC
CCGACTATTAAATAAAAGTCCGACATTTTTCCCCAATTAGGTATACTCTG
GTCTATAGCGCATATGATTTACACGAAAACACGAGTAGAACTCTTTTTTA
CGTACGCGGTGGTTTCGGTCTATCTTACAATTTTCATTTAATGAAAATCT
TTCGTTTTATTAAAGTTATGGCCGGAAAATACCGACGCACCATGATGGCA
AGGATTATGAAGGAAAAGAGAAACTCAAAGTAGAGGAGAAAAGAAGATGT
TCAACCCAGCAAAAAATCGATCACAATCAAACTAGAACGAGAAAACTGAC
ATCCGATTAATCCCATTCCACTCAAATAACAACAATAATCAATCGATGCT
TTTAGCTAGTATACTTAATTTCATTTAAAGATTTTTGTAATTAATTCAGT
GATATACATCATAAACTTTAGACTTTTTTAGAACGAAAAGATTTGTATTT
TTTCCAAGTTAATATAAATATAACCACTCGAAATGAACATATAATAATAG
CTATTCGTGAAGTTATCAATTAGTGTGGAATTAGCAG

Coding sequence (CDS) from alignment at scaffold_243:627561..631547-

>TCONS_00054654 ID=TCONS_00054654|Name=TCONS_00054654|organism=Clytia hemisphaerica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_243:627561..631547- (Clytia hemisphaerica)
TTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATGAAGGAA
AAGAGAAACTCAAAGTAGCACACGCCAAAAGAAATAATGTCAAACGAGAG
TGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGA
TTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCG
GTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGT
CCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAATGTCAC
TCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTCCGCAT
GTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATT
GGCAAAAGAGAAGGATGCGAAGACAAATACCCTGAGAAATGTTACCAACA
AGTTGTCGTTGGTATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATT
TCTATTGGAATGTTTGCCCTAAATCGTGTGGAGCATGTGATGAATACAAT
CTGTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAA
TTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATGAAGGAA
AAGAGAAACTCAAAGTAGCACACGCCAAAAGAAATAATGTCAAACGAGAG
TGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGA
TTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCG
GTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGT
CCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAATGTCAC
TCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTCCGCAT
GTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATT
GGCAAAAGAGAAGGATGCGAAGACAAATACCCTGAGAAATGTTACCAACA
AGTTGTCGTTGGTATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATT
TCTATTGGAATGTTTGCCCTAAATCGTGTGGAGCATGTGATGAATACAAT
CTGTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAA
TTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATGAAGGAA
AAGAGAAACTCAAAGTAGCACACGCCAAAAGAAATAATGTCAAACGAGAG
TGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGA
TTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCG
GTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGT
CCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAATGTCAC
TCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTCCGCAT
GTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATT
GGCAAAAGAGAAGGATGCGAAGACAAATACCCTGAGAAATGTTACCAACA
AGTTGTCGTTGGTATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATT
TCTATTGGAATGTTTGCCCTAAATCGTGTGGAGCATGTGATGAATACAAT
CTGTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAA
TTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATGAAGGAA
AAGAGAAACTCAAAGTAGCACACGCCAAAAGAAATAATGTCAAACGAGAG
TGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGA
TTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCG
GTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGT
CCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAATGTCAC
TCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTCCGCAT
GTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATT
GGCAAAAGAGAAGGATGCGAAGACAAATACCCTGAGAAATGTTACCAACA
AGTTGTCGTTGGTATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATT
TCTATTGGAATGTTTGCCCTAAATCGTGTGGAGCATGTGATGAATACAAT
CTGTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAA
TTATGGCCGGAAAATACCGACGCACCATGATGGCAAGGATTATGAAGGAA
AAGAGAAACTCAAAGTAGCACACGCCAAAAGAAATAATGTCAAACGAGAG
TGCGACTGTCACGATTTCGATTGGGATTTGATTACCCCCGATTGTGAGGA
TTACTGCGTGTTTCAAGAATTTTGTTCAGAAGCATGCATTGAGGGTATCG
GTGGACCCGAATGCGGTTGTCCCGGCCACCCAATCGGCAAAAGAGGAGGT
CCCTCCAAAAGAGAAAACACGAAACGTTCATGCGACTGCGATAATGTCAC
TCCTGATTGCGAAGACTATTGTCTTATGGAACAATTCTGTGATTCCGCAT
GTAAACAAGGCTTAGCTGGCCCAGAATGCAACTGTCCAGATCATCCAATT
GGCAAAAGAGAAGGATGCGAAGACAAATACCCTGAGAAATGTTACCAACA
AGTTGTCGTTGGTATCAATGGAGAAAAGCGAAGATGCGGTAGTGGAGATT
TCTATTGGAATGTTTGCCCTAAATCGTGTGGAGCATGTGATGAATACAAT
CTGTGTTACACTCAGCTTAATTTGTATAGTAGCTGCTATATCAGCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034426XLOC_034426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054654-exon-scaffold_243-1575043694:631300..631547TCONS_00054654-exon-scaffold_243-1575043694:631300..631547Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1575043694:630871..630996TCONS_00054654-exon-scaffold_243-1575043694:630871..630996Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1575043694:630421..630585TCONS_00054654-exon-scaffold_243-1575043694:630421..630585Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1575043694:629255..629434TCONS_00054654-exon-scaffold_243-1575043694:629255..629434Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1575043694:627561..627932TCONS_00054654-exon-scaffold_243-1575043694:627561..627932Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1510915933:631300..631547TCONS_00054654-exon-scaffold_243-1510915933:631300..631547Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1510915933:630871..630996TCONS_00054654-exon-scaffold_243-1510915933:630871..630996Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1510915933:630421..630585TCONS_00054654-exon-scaffold_243-1510915933:630421..630585Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1510915933:629255..629434TCONS_00054654-exon-scaffold_243-1510915933:629255..629434Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1510915933:627561..627932TCONS_00054654-exon-scaffold_243-1510915933:627561..627932Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1491911889:631300..631547TCONS_00054654-exon-scaffold_243-1491911889:631300..631547Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1491911889:630871..630996TCONS_00054654-exon-scaffold_243-1491911889:630871..630996Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1491911889:630421..630585TCONS_00054654-exon-scaffold_243-1491911889:630421..630585Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1491911889:629255..629434TCONS_00054654-exon-scaffold_243-1491911889:629255..629434Clytia hemisphaericaexon
TCONS_00054654-exon-scaffold_243-1491911889:627561..627932TCONS_00054654-exon-scaffold_243-1491911889:627561..627932Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054654-proteinTCONS_00054654-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:627561..631547 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201121	0.274575	0.63487	0.311903	1.00449	1.92892	118.951	108.631	44.2387	41.5909	9.83019	9.99022	4.39133	1.91845	73.5426	75.3301	2.45526	1.55665	28.9568	31.7443	0	0	0.184481	0	0	0	0	0	0.0892914	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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