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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054656 ID=TCONS_00054656|Name=TCONS_00054656|organism=Clytia hemisphaerica|type=transcript|length=1209bp
CAGGTTCAACAAATTCGTCTTTGTATTATCACGTAAAAAATCCCTATAAA
AACTCACGTAAGTCAGTTAAAAAAGCAtatctttaattttcaaagaagaa
CGAAGATCACCAAAAAGAAGAGAAAGGATGTTTCGGTTGATCGCTGCCCT
CGGATGCCTCATCGTCGTTGCATATGCATGCACCGATAGAAGTAAAAATT
GTCCTAATTGGGCAAAATCTTCACAAAACTACTGTCAAACAAACGGATGG
GTCAAGGATAATTGTAAGAAATCTTGCGGCACCTGCCCTGGCGGAAACGG
TGGCTCAGGAGGAAACGGTGGCTCAGGAGGATCTGGAAGTAATGGACAAT
GTGGAATTTCCAAAGTCTCACAAAGTCGTGTAGTCAATGGTGTTGAAGCC
AAACCTGGAGCTTGGCCATGGATCGTGTCTCTCCAAACTTCGCGAGGATT
CCACTTCTGTGGTGGTTCAATCTTGACTCCGAACTGGattttgactGCTA
GCCATTGTGTTGAACGACAAATGGGTAACCAAAGAGgagtcgttgttgtt
gttggagcTCATGACAAAACACGAAGAGAGAGCACTCAACAAAGAATCCA
ATCTTCTCAAATCATCATGCACCCAAACTATAAACAAGGAGGTGGTCTCA
ATGCTGATGTTGCTTTGATTCGACTTTCATCTCCTCTTAAATTGAACGAC
CGTGTTGTCAAAGCTTGCATGCCACAACAAGGAGTCTATCCAAGAGTTGG
AAAGAACTGCTATATTGCCGGATGGGGAGCCACAAATCACCCAGGCACTG
GCGCTCCACCAAAGCTTCAACAAGCTAAGCTTCCAGTTGTTGGTACGCCA
CACAGAGGTTGCCATAACAACAAAGAAGTCGTTTGCGTTGGTCTTGGATT
CGGAAAACAATCTGACGGTAAACAACATCCAAACGCATGCCGTGGTGATT
CTGGTGGCCCATTGATGTGTCAACAATCAAACGGATCATGGACTGTTGAA
GGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTTACGC
TCCAGTCAACAAATACTTGCCTTGGATCAAGCAATACGTTCGTGATTTGT
AAAATTGTATTCATTTAAAAAAGACAAAGTTTGGCATAATATATAAATCT
ACTTTCATCTTTGTGAAGCTGACATATTTGGGCTAATCTTTAGAGCTGGT
TTAGAAAAT Run BLAST on NCBI protein sequence of TCONS_00054656-protein >TCONS_00054656-protein ID=TCONS_00054656-protein|Name=TCONS_00054656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MFRLIAALGCLIVVAYACTDRSKNCPNWAKSSQNYCQTNGWVKDNCKKSC
GTCPGGNGGSGGNGGSGGSGSNGQCGISKVSQSRVVNGVEAKPGAWPWIV
SLQTSRGFHFCGGSILTPNWILTASHCVERQMGNQRGVVVVVGAHDKTRR
ESTQQRIQSSQIIMHPNYKQGGGLNADVALIRLSSPLKLNDRVVKACMPQ
QGVYPRVGKNCYIAGWGATNHPGTGAPPKLQQAKLPVVGTPHRGCHNNKE
VVCVGLGFGKQSDGKQHPNACRGDSGGPLMCQQSNGSWTVEGVASYVYTY
CKYYTAYAPVNKYLPWIKQYVRDL Run BLAST on NCBI transcript from alignment at scaffold_243:672515..674196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054656 ID=TCONS_00054656|Name=TCONS_00054656|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at scaffold_243:672515..674196- (Clytia hemisphaerica)
CAGGTTCAACAAATTCGTCTTTGTATTATCACGTAAAAAATCCCTATAAA
AACTCACGTAAGTCAGTTAAAAAAGCATATCTTTAATTTTCAAAGAAGAA
CGAAGATCACCAAAAAGAAGAGAAAGGATGTTTCGGTTGATCGCTGCCCT
CGGATGCCTCATCGTCGTTGCATGTAAGTTAAATTAACCAATAGTTTTTT
CTCAATTTTTTTTTCGCTTAAATTTTCAGCCATTTATTGATTTTCGGTGT
CTTTTCCGGCAATGTAGAGGCCTAATTTCCCCCAATGCGTTCCCCTCCAA
ACTTTATTGTTCTATTTATGGTAAAAATTGAGTCATTGGCATCAATTATG
TTCACCTTTTAGATGCATGCACCGATAGAAGTAAAAATTGTCCTAATTGG
GCAAAATCTTCACAAAACTACTGTCAAACAAACGGATGGGTCAAGGATAA
TTGTAAGAAATCTTGCGGCACCTGCCCTGGCGGAAACGGTGGCTCAGGAG
GAAACGGTGGCTCAGGAGGATCTGGAAGTAATGGACAATGTGGAATTTCC
AAAGTCTCACAAAGTCGTGTAGTCAATGGTGTTGAAGCCAAACCTGGAGC
TTGGCCATGGATCGTGTCTCTCCAAACTTCGCGAGGATTCCACTTCTGTG
GTGGTTCAATCTTGACTCCGAACTGGGTAAGCATTATGAAATTAGTATAA
TTTCCCACATAGAAGTTGAGGGTTCTACTTTCCAAAATACAAAAGATTTT
TGTTTTGTTTTCAAGACCGAAATCTCGTACGCCAACCCCCCCCATTATAA
TGTCTACGTATCCCCTTTTCCAGTAAAGAGTACTTAAAGGACTTTTATTT
TTTAGATTTTGACTGCTAGCCATTGTGTTGAACGACAAATGGGTAACCAA
AGAGGAGTCGTTGTTGTTGTTGGAGCTCATGACAAAACACGAAGAGAGAG
CACTCAACAAAGAATCCAATCTTCTCAAATCATCATGCACCCAAACTATA
AACAAGGAGGTGGTCTCAATGCTGATGTTGCTTTGATTCGACTTTCATCT
CCTCTTAAATTGAACGACCGTGTTGTCAAAGCTTGCATGCCACAACAAGG
AGTCTATCCAAGAGTTGGAAAGAACTGCTATATTGCCGGTATGATTTTTT
CGATTTTTTTTTGCTTCTAGAGTAGAGGAACAGAGTGAATGAACTAATTT
CTTTTTAAATTTAGACTAACATTCAAATGATCTATTTTTGTAGGATGGGG
AGCCACAAATCACCCAGGCACTGGCGCTCCACCAAAGCTTCAACAAGCTA
AGCTTCCAGTTGTTGGTACGCCACACAGAGGTTGCCATAACAACAAAGAA
GTCGTTTGCGTTGGTCTTGGATTCGGAAAACAATCTGACGGTAAACAACA
TCCAAACGCATGCCGTGGTGATTCTGGTGGCCCATTGATGTGTCAACAAT
CAAACGGATCATGGACTGTTGAAGGTGTTGCTAGTTATGTTTACACTTAT
TGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGCCTTGGAT
CAAGCAATACGTTCGTGATTTGTAAAATTGTATTCATTTAAAAAAGACAA
AGTTTGGCATAATATATAAATCTACTTTCATCTTTGTGAAGCTGACATAT
TTGGGCTAATCTTTAGAGCTGGTTTAGAAAAT Coding sequence (CDS) from alignment at scaffold_243:672515..674196- >TCONS_00054656 ID=TCONS_00054656|Name=TCONS_00054656|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_243:672515..674196- (Clytia hemisphaerica)
GATGGGGAGCCACAAATCACCCAGGCACTGGCGCTCCACCAAAGCTTCAA
CAAGCTAAGCTTCCAGTTGTTGGTACGCCACACAGAGGTTGCCATAACAA
CAAAGAAGTCGTTTGCGTTGGTCTTGGATTCGGAAAACAATCTGACGGTA
AACAACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCATTGATGTGT
CAACAATCAAACGGATCATGGACTGTTGAAGGTGTTGCTAGTTATGTTTA
CACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGC
CTTGGATCAAGCAATACGTTCGTGATTTGTAAATTTTGACTGCTAGCCAT
TGTGTTGAACGACAAATGGGTAACCAAAGAGGAGTCGTTGTTGTTGTTGG
AGCTCATGACAAAACACGAAGAGAGAGCACTCAACAAAGAATCCAATCTT
CTCAAATCATCATGCACCCAAACTATAAACAAGGAGGTGGTCTCAATGCT
GATGTTGCTTTGATTCGACTTTCATCTCCTCTTAAATTGAACGACCGTGT
TGTCAAAGCTTGCATGCCACAACAAGGAGTCTATCCAAGAGTTGGAAAGA
ACTGCTATATTGCCGATGCATGCACCGATAGAAGTAAAAATTGTCCTAAT
TGGGCAAAATCTTCACAAAACTACTGTCAAACAAACGGATGGGTCAAGGA
TAATTGTAAGAAATCTTGCGGCACCTGCCCTGGCGGAAACGGTGGCTCAG
GAGGAAACGGTGGCTCAGGAGGATCTGGAAGTAATGGACAATGTGGAATT
TCCAAAGTCTCACAAAGTCGTGTAGTCAATGGTGTTGAAGCCAAACCTGG
AGCTTGGCCATGGATCGTGTCTCTCCAAACTTCGCGAGGATTCCACTTCT
GTGGTGGTTCAATCTTGACTCCGAACTGGATGTTTCGGTTGATCGCTGCC
CTCGGATGCCTCATCGTCGTTGCATGATGGGGAGCCACAAATCACCCAGG
CACTGGCGCTCCACCAAAGCTTCAACAAGCTAAGCTTCCAGTTGTTGGTA
CGCCACACAGAGGTTGCCATAACAACAAAGAAGTCGTTTGCGTTGGTCTT
GGATTCGGAAAACAATCTGACGGTAAACAACATCCAAACGCATGCCGTGG
TGATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATCATGGACTG
TTGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCT
TACGCTCCAGTCAACAAATACTTGCCTTGGATCAAGCAATACGTTCGTGA
TTTGTAAATTTTGACTGCTAGCCATTGTGTTGAACGACAAATGGGTAACC
AAAGAGGAGTCGTTGTTGTTGTTGGAGCTCATGACAAAACACGAAGAGAG
AGCACTCAACAAAGAATCCAATCTTCTCAAATCATCATGCACCCAAACTA
TAAACAAGGAGGTGGTCTCAATGCTGATGTTGCTTTGATTCGACTTTCAT
CTCCTCTTAAATTGAACGACCGTGTTGTCAAAGCTTGCATGCCACAACAA
GGAGTCTATCCAAGAGTTGGAAAGAACTGCTATATTGCCGATGCATGCAC
CGATAGAAGTAAAAATTGTCCTAATTGGGCAAAATCTTCACAAAACTACT
GTCAAACAAACGGATGGGTCAAGGATAATTGTAAGAAATCTTGCGGCACC
TGCCCTGGCGGAAACGGTGGCTCAGGAGGAAACGGTGGCTCAGGAGGATC
TGGAAGTAATGGACAATGTGGAATTTCCAAAGTCTCACAAAGTCGTGTAG
TCAATGGTGTTGAAGCCAAACCTGGAGCTTGGCCATGGATCGTGTCTCTC
CAAACTTCGCGAGGATTCCACTTCTGTGGTGGTTCAATCTTGACTCCGAA
CTGGATGTTTCGGTTGATCGCTGCCCTCGGATGCCTCATCGTCGTTGCAT
GATGGGGAGCCACAAATCACCCAGGCACTGGCGCTCCACCAAAGCTTCAA
CAAGCTAAGCTTCCAGTTGTTGGTACGCCACACAGAGGTTGCCATAACAA
CAAAGAAGTCGTTTGCGTTGGTCTTGGATTCGGAAAACAATCTGACGGTA
AACAACATCCAAACGCATGCCGTGGTGATTCTGGTGGCCCATTGATGTGT
CAACAATCAAACGGATCATGGACTGTTGAAGGTGTTGCTAGTTATGTTTA
CACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGC
CTTGGATCAAGCAATACGTTCGTGATTTGTAAATTTTGACTGCTAGCCAT
TGTGTTGAACGACAAATGGGTAACCAAAGAGGAGTCGTTGTTGTTGTTGG
AGCTCATGACAAAACACGAAGAGAGAGCACTCAACAAAGAATCCAATCTT
CTCAAATCATCATGCACCCAAACTATAAACAAGGAGGTGGTCTCAATGCT
GATGTTGCTTTGATTCGACTTTCATCTCCTCTTAAATTGAACGACCGTGT
TGTCAAAGCTTGCATGCCACAACAAGGAGTCTATCCAAGAGTTGGAAAGA
ACTGCTATATTGCCGATGCATGCACCGATAGAAGTAAAAATTGTCCTAAT
TGGGCAAAATCTTCACAAAACTACTGTCAAACAAACGGATGGGTCAAGGA
TAATTGTAAGAAATCTTGCGGCACCTGCCCTGGCGGAAACGGTGGCTCAG
GAGGAAACGGTGGCTCAGGAGGATCTGGAAGTAATGGACAATGTGGAATT
TCCAAAGTCTCACAAAGTCGTGTAGTCAATGGTGTTGAAGCCAAACCTGG
AGCTTGGCCATGGATCGTGTCTCTCCAAACTTCGCGAGGATTCCACTTCT
GTGGTGGTTCAATCTTGACTCCGAACTGGATGTTTCGGTTGATCGCTGCC
CTCGGATGCCTCATCGTCGTTGCATGATGGGGAGCCACAAATCACCCAGG
CACTGGCGCTCCACCAAAGCTTCAACAAGCTAAGCTTCCAGTTGTTGGTA
CGCCACACAGAGGTTGCCATAACAACAAAGAAGTCGTTTGCGTTGGTCTT
GGATTCGGAAAACAATCTGACGGTAAACAACATCCAAACGCATGCCGTGG
TGATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATCATGGACTG
TTGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCT
TACGCTCCAGTCAACAAATACTTGCCTTGGATCAAGCAATACGTTCGTGA
TTTGTAAATTTTGACTGCTAGCCATTGTGTTGAACGACAAATGGGTAACC
AAAGAGGAGTCGTTGTTGTTGTTGGAGCTCATGACAAAACACGAAGAGAG
AGCACTCAACAAAGAATCCAATCTTCTCAAATCATCATGCACCCAAACTA
TAAACAAGGAGGTGGTCTCAATGCTGATGTTGCTTTGATTCGACTTTCAT
CTCCTCTTAAATTGAACGACCGTGTTGTCAAAGCTTGCATGCCACAACAA
GGAGTCTATCCAAGAGTTGGAAAGAACTGCTATATTGCCGATGCATGCAC
CGATAGAAGTAAAAATTGTCCTAATTGGGCAAAATCTTCACAAAACTACT
GTCAAACAAACGGATGGGTCAAGGATAATTGTAAGAAATCTTGCGGCACC
TGCCCTGGCGGAAACGGTGGCTCAGGAGGAAACGGTGGCTCAGGAGGATC
TGGAAGTAATGGACAATGTGGAATTTCCAAAGTCTCACAAAGTCGTGTAG
TCAATGGTGTTGAAGCCAAACCTGGAGCTTGGCCATGGATCGTGTCTCTC
CAAACTTCGCGAGGATTCCACTTCTGTGGTGGTTCAATCTTGACTCCGAA
CTGGATGTTTCGGTTGATCGCTGCCCTCGGATGCCTCATCGTCGTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054656-exon-scaffold_243-1575043694:674024..674196 | TCONS_00054656-exon-scaffold_243-1575043694:674024..674196 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1575043694:673521..673834 | TCONS_00054656-exon-scaffold_243-1575043694:673521..673834 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1575043694:673059..673341 | TCONS_00054656-exon-scaffold_243-1575043694:673059..673341 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1575043694:672515..672953 | TCONS_00054656-exon-scaffold_243-1575043694:672515..672953 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1510915933:674024..674196 | TCONS_00054656-exon-scaffold_243-1510915933:674024..674196 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1510915933:673521..673834 | TCONS_00054656-exon-scaffold_243-1510915933:673521..673834 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1510915933:673059..673341 | TCONS_00054656-exon-scaffold_243-1510915933:673059..673341 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1510915933:672515..672953 | TCONS_00054656-exon-scaffold_243-1510915933:672515..672953 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1491911889:674024..674196 | TCONS_00054656-exon-scaffold_243-1491911889:674024..674196 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1491911889:673521..673834 | TCONS_00054656-exon-scaffold_243-1491911889:673521..673834 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1491911889:673059..673341 | TCONS_00054656-exon-scaffold_243-1491911889:673059..673341 | Clytia hemisphaerica | exon |
| TCONS_00054656-exon-scaffold_243-1491911889:672515..672953 | TCONS_00054656-exon-scaffold_243-1491911889:672515..672953 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:672515..674196 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00054656 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 3.223e-35 Identity = 82/241 (34.02%), Postives = 129/241 (53.53%), Query Frame = 2
Query: 374 SRVVNGVEAKPGAWPWIVSLQTSRGFHFCGGSILTPNWILTASHCVERQMGNQRGVVVVVGAHDKXXXXXXXXXXXXXXXXMHPNYKQGGGLNADVALIRLSSPLKLNDRVVKACMPQQGVYPRVGKNCYIAGWGATNHPGTGAPPKLQQAKLPVVGTPHRGCHNNKEVVCVGLGFGKQSDGKQHPNACRGDSGGPLMCQQSNGSWTVEGXXX--XXXXXXXXXXXXXPVNKYLPWIKQYV 1090
SR+VNG +A PG+WPW VSLQ GFHFCGGS+++ +W++TA+HC G + VVV G D+ E Q ++ +++ +P + +N D+ L++L++P + + V C+P G C GWG T + P KLQQA LP++ + + V + G ++C GDSGGPL+CQ+ +G+WT+ G+ S YA V K +PW+++ +
Sbjct: 32 SRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC-----GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSI-LTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMI-----CAGASGVSSCMGDSGGPLVCQK-DGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQKIL 260
The following BLAST results are available for this feature:
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