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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054657 ID=TCONS_00054657|Name=TCONS_00054657|organism=Clytia hemisphaerica|type=transcript|length=8504bp protein sequence of TCONS_00054657-protein >TCONS_00054657-protein ID=TCONS_00054657-protein|Name=TCONS_00054657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1168bp MKYQGLIFLLLFTRLKTIESAEPVINNAINEIKVSYCSTQEYKLDANAYSRun BLAST on NCBI transcript from alignment at scaffold_243:755284..785918- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054657 ID=TCONS_00054657|Name=TCONS_00054657|organism=Clytia hemisphaerica|type=transcript|length=30635bp|location=Sequence derived from alignment at scaffold_243:755284..785918- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:755284..785918- >TCONS_00054657 ID=TCONS_00054657|Name=TCONS_00054657|organism=Clytia hemisphaerica|type=CDS|length=10521bp|location=Sequence derived from alignment at scaffold_243:755284..785918- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054657 vs. Swiss-Prot (Human)
Match: SYT9 (Synaptotagmin-9 OS=Homo sapiens GN=SYT9 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 8.212e-24 Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 2
Query: 599 FSDKFSFAIKFKELQEYIIYISVWNVNIFHHEILLGAAHMD-LSNYSDFTNKNIISSDIVPVKKDKNIYGHILVGLCYLPSVERLMCVVMSAKDLKD-DVTNLSILNNVINPFVDVFLVNDGKMIKCHSTKILLDDKSPVFNEAIEFYIPNHQIEGSDIHL-IAMHKYNRIT-NTLIGKVMIGSHSDGHYKSHWTKTLANPEKVIPFWHPLTR*R 1231
F + F F + + +L+ ++ SV++ + F L+G +D + +DF + I+ DI V D G ++ LCYLP+ RL ++ A++LK D+T S +P+V V L+ DG+ +K T + +PV+NEAI F +P I+ IHL IA+ Y+R+ N +IG +G+ ++ + HW++ L+ P K I WH L R
Sbjct: 285 FDEVFLFPVPYNDLEARKLHFSVYDFDRFSRHDLIGQVVVDHFLDLADFPRECILWKDIEYVTNDNVDLGELMFSLCYLPTAGRLTITIIKARNLKAMDITGAS------DPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENID--QIHLSIAVMDYDRVGHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLVEKR 491 The following BLAST results are available for this feature:
BLAST of TCONS_00054657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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