TCONS_00054659 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054659
Unique Name	TCONS_00054659
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	7243

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_243:773673..785918-

transcript sequence

>TCONS_00054659 ID=TCONS_00054659|Name=TCONS_00054659|organism=Clytia hemisphaerica|type=transcript|length=7243bp
ATTAGCTCAAAACCAGGTTATTGAAGAATTTTATAGTTTGAAAATGAAGT
CATTAGGaagtaaaaagaaatatttcatcGTTTTCACTATGATAAGTATG
CTAGGCTTCATTGTGTTTTATATGTTTAAGAAAGTGATGGCAAAGCGGGC
ACAATATCTGAGAGATTTGGCAAGGCATGATGGTACTAAACATGGagaat
ccgccatctttgaagAACAATCAGCAATATTAGAAGAAAAAGATGACGAG
AAAATTGACCAAGATGACATGAAGGTCGACGTCACTCAATATTTCGAATA
TCAAAAATATGATCCCGAAAATCTTTGGGAGCAATACAAAAAACAGCCAA
GTAGGTTCTTGAATGTTGCAGCGTTATGTGAAAGTGATAGCGAGGATACG
ACACCaagaattgaaattcaaatatatTACCAAACATTTGTTCATTTGTT
TCGTGTCCACATCTTATCGTTGACAAAAATGTTATCTTTCCAGACAAATG
ACAGTAAGAATATCAAGTTAAAAATCATGCTCAGAAgaagttcaaaaaca
tgttTCTCCGATGTTACTGACATTTATCCATTTGGAGAAACAATTGAATT
TTCCGACAAGTTCTCATTTGCAATCAAATTCAAAGAACTACAGGAATACA
TCATCTACATATCTGTCTGGAATGTCAACATATTTCACCATGAGATCTTG
TTAGGAGCAGCTCATATGGATTTGAGCAATTACAGTGATTTCACCaataa
aaacataatttcaaGTGACATTGTCCCTGTCAAAAAGGACAAAAACATTT
ATGGGCACATCTTGGTCGGGTTGTGTTATCTACCGAGTGTTGAACGGTTG
ATGTGCGTGGTGATGAGCGCTAAAGACTTGAAAGATGATGTCACCAATCT
TTCCATTCTCAATAATGTCATCAATCCCTTTGTAGACGTGTTTTTGGTGA
ACGATGGGAAGATGATCAAATGTCATTCCACTAAAATATTACTCGATGAT
AAATCACCTGTTTTCAACGAAGCTATCGAGTTTTACATTCCGAATCATCA
AATAGAAGGATCGGATATCCATCTGATTGCAATGCATAAATACAATCGTA
TCACGAACACTCTGAtagggaaagtcatgattggaAGTCATTCCGATGGT
CATTACAAATCACACTGGACTAAAACATTAGCTAACCCAGAAAAAGTCAT
ACCATTCTGGCACCCCTTGACACGATGACGTCATGATCAAGGAAAtaaga
tatttttcttttgtttagaaatTTGATCTCGTGTATATGTCGAAAGATCT
ATTTGATCAAATAGGACTAAAACAAGTTTgagatttgaaaatttcgaaat
tgaaCCAGATTGAACGCATAGTATGTAAGCAAATAAAGGGAAATCAGGCT
TAAATATGAGAAAACATTTGAGTATCTTGTGCTTTGGCGTTTTATTTTTG
GTTCTTGGTATTGGTTTAGAAACTGCAGGTGTAGCAGCGCCAGAATGGTT
TAGAAATACCAATATCACAGATGATGCTATAATTGTTCTCAGCATATGGA
ATCGTTGTCAAGAAGGACCAGCTCTGAAAACACCACCAAAAGATTGTAAC
AAAGGAAAAGTATTATTATTTGGAAAAGATGATTTTGCGCTGGATTTGAT
ATTGGCACTTCACTGTGGTTCCATATTGATTTGCTTCATCGGATTGATCG
CTGCAATCAGCATGTTTTATTGCAGAAACCAAAGGAATGCCTGGAGACAT
TGTTCACTTTTCACATCagcaattattttgatttcTGcGGCATGTGGCGT
AGTAGCAGTGGTGTATAACGAATAcaatcataaagaacattttctaAATT
CATATTTACGTGGTTGGGCGTACATGATGGCGGTATGTGGCGTTTGCTTG
ATATTCATTTCTGGTGTCATCCTAGCGGTGTTGATCTTCATCAAACCTAG
AAAGAAGATGATTTATGCACAAAGTAGAAGAATACGTAACAATGAGAATG
AGGTGGAGCTAAAATAAGATAAGAATAAGAATGTTTTTATTGGTAATTTT
ATTCATGCAGGATGAGATACTTCACAAAATATTACGTTAGTAAAACACTT
TCGGAGCCAATTGTTGTTGTGTTGTTGATATTTAGAAGTTGTTACCTTCT
TATATTACGCTTAAAATTTATATCGtgacaaattgttttttttcattgag
tgtcgacaatgaaataaaaaataggATTTCAGTTAAGCTGTCTGTGAGTT
TAAAGTAACTATTATTTATTTGTTGAATGTCTGTAGAGAATATATTTGta
attgttaaaaataaatttgaaattattaaaatattatGGCAAGAGGATCT
TTATTGACTTTTACCNaatttgaaattattaaaatattatGGCACGAGGA
TCTTTATTGACTTTTACCTTATGGTTGCTCTTGACAAGTTTAGCAGCATT
ATCAGCCAGCATCTTTGGAGATGTTTGGTATGTTTACGAGCCCAATGGAA
CGACCACAGGTTTACTAAAGAAATGCTACTTTGACATCCAGACTAAGAAA
GTATGCATTAACAGAAAAGTGTTTAAATTCAAAGAAAAGGATTTCGATTT
GGATGTGATATTGACAGGGCTATTGGGCTCCACACTTCTCATTATATGCA
GTATTTCGATAGCGACAAGATTGTACTGTTCACAAAAAGTGATCGTCCCT
ACCTGGAAATGTTATACCACACTGATTGCAGTTTTGACTATCACAGCTGC
TTGTTCGACGACGGCAACTATGGTTTACTACATTTACGATGACTCGGGAA
TGCTTATAGATAAAACAAGTGGGTGGACAACTACAATAGGATGGGTGGCA
GTTGGAGAGCTAAACTTTACCATGGTTTTTGCTGTCCTTTTGAGATATAT
TGGTCCAAATCATGGAAACATAGTGAATGGAGTATATGAAACACGGAGGG
GCGAATATGAGATGAATTAAAATCTCTGCTGGAGACTGCGTTTGGTAACA
CAACAAGTTATGACGGGAAGATGAATCATTAATTAAGTGATGAACAGTTT
CCTAAGGACAATCTTCAATAGATGCCGATAAACAACACTGCTATTTCTTT
CATTCTAGCTCCCCTACCGTTCAACGAAAATCGGCCAACAGCGCCGTCAG
GAAAGGCACTTTGAATTCCAAATTAATATTTCAAAGATCAATGAAGAAAT
GCCCGAAtaatatttggcaaaaaaaatcaaaacgccTTTGATTTGAATTT
ACGGAACTTTTTTCGTAAACAATTATAAAGTATAGAATTagtaataaaaa
tcaaaacgaaataaaaaaattcatacctTTTTACTTTTCAATTTTGTTCA
TGGAGTAGCTTTGTTAATAAAATTGTATATATGATTTGAACTGTTTTCGA
TTTCGAAGAAAATGAAGTACCAGGGGTTGATCTTTCTTCTCCTTTTCACT
CGCCTAAAAACGATTGAAAGTGCAGAGCCAGTGATCAACAACGCCATAAA
CGAGATTAAAGTATCTTACTGTTCAACGCAAGAATACAAACTTGACGCAA
ATGCTTATTCTGATGCAGAAGACGGGAATTTAGTAGGTGGAAAACTTACA
TTGAAACTTCTAGATGCGTCTGCAGCAACCTTCGTGCCAAATGATGAGAA
GCCAGTACAATTGGTGGGAACTTCACTCTTTATTGTTCCAGTATCGACAA
CACAGAGTGAATTGAATCTCATTCTTCGTGTGATGGATACATCTGGATCG
TTCAAAGACGACAGGTTCAAAGTCACTTTCAACAATAAAATCTCCGTACG
TGAAATCTCCTTCCACTTCACTTTGAGCAAGGTAACAACAGGAGACGTGC
AGATACAAGATCTCTTCAACTTTTACCAAGCGCTGAAAGAATTGACCACT
TGGAAGACGAGAAACTTTGGTTTAAGTGAAATCACAAATGTAGCAGACAA
GAAAAAAGAAGTGGCTGTATTCGATTGTGGAATGACGCAGTCTACTTGCC
CATTACAGACCATTTTGAATCTGATCAATGACGTAAAAGATCAAAACCCA
GGGCCAACCTACACGCTCAATTTTGATAGTAAAATGGCAGCAATAGACCT
ACAAGCCAGTGGGTTTCGCTGGGAAAAATTTGACCGCTGTATTGGAGTGT
CTGGAGTACCAGACCGTGACATAAACCTTGAATTCTGGTCGTTTGCAGGA
ATCCAAGCGATTGATCGAACACAGGTCATCCAGGTAGAAATTCCCGACGG
AGGCTTTACTTATGAAAGTATCAAGCAAAGTACAATGACTCTCGAAATAC
AATCAGGACGCAATGATCCAACAATAGCTTTCGATAACTTCTGGATTGGC
GCTGAACTGGAAGGTAGTAAATGGATCATATATGCAGTGAGAACAGACCG
ATTTTATGAGTATATAAGTTTGACAGGGAACTTTTTCGAACACAAAGGGA
TCTTATATGCTCAAGTGTTTGTCTCTGCGTCAGTTCTATTACCGATCAGC
GTCGAACGAAATGATTATTACATGTCAGTAGAAAACACAACGAAACCAAT
GAACAACTACATTGTTGAATTCTCCGTTGGAATCACAGGAATTGCTAAAC
ACATATATCCCAAAcaaatcaacatttttttatcaaagttgTATGTCACA
TTTGGTACATCATACAAAGAATTGATCTATGTCAATGATTACGTCATCGA
ATCGTTTGATGGGCGAAATGGAGATGGAGTTATCCGGTGGAGCTTGATGA
TGGACAAATGTGACTTTGACAGAATTGAATTCATCCgttcaaaaatgttt
gaaagtGGAAGCCAGGAAGAAATCAATAATGATTTTAAACTCCGAATGAA
AAGAGAATATGACTTGAGATCGATAAAGGAAACTCTATCAGGTGACTGCA
ACCTATCAAAACCAAAACAGAGCAGTCCGATCGGCCCATACCAGATTTCC
TACTGTGGAATAAACAGCTTCAAACTAGCAGACGATACTTTTATCGACGA
AGAAGATGGCAATCTAGCGAAACTGACCGCAAAAATGACAACCGAGCAAA
ACAAACCAATTGGCAGTGACGATATTATTCAATTCGACACAGCAACTAAG
ATCATCTATGGATTGCTACCTTCGACATACAATCCACCACTCCAGAGAGA
AATCACATATAAATTAGTAGTCACTGATTCATCAAACCTTTCTACAGAAA
CTGTCGTTAAATTTATTGTGTCGGATGATTCAAAAACAATCCCTTACAGT
ATCTCCATAACAACCAAGTTCACGGCACAGTCAACAAGCTTCAACCAGAG
TCCAGGATTGGCATTAGCTTTTAAAGCTGGTAACTATTTTGGTGATAACG
GCAATGGATTTTCTTTGGTCAGCTCACAAACTTCTTCTGATGGGAATCAA
GTCATAAAGTTCGGAAATTGTACATGGTCGACACCTCAATGTGACTTTGT
TAActtaaatttttacaaaaacaaacttctggCCACATCAACATCCTTGA
ACGCACTTCTTGATTTGAAACCAGAATTTGAAGTGTTGAATGTGGAAGAA
GTTATCAAACCTCCCTGTGACAAGGACAATCCACCAGAAGTCTCAAATCC
TTTACAAGATTTATCAGTTACAACTTGTGCAACGTTTATTATCAACATTC
CTGCTAATACCTTCAATGATGTCGAACAAGGAAATACAAGGAATCTGGAT
CTTTCCATTCATTTTTCTGGACTGCAATTCGGACAAACAGAAATGCTACA
TTTTCAGGAGACAACTCAAATCATAGCAATTGTTGCAGCAGAAAGTGATT
TAAATAGCtacaattttgaattgaaagcCACTGATATTGGTGGAAATCAA
GCTATTGACACTTTCAGTGCCCAAGTTCAAAAAGAGGAGAAGGATCCGTC
CCATATCTTCACATTTCAGTTCAGAATTCTCAAAAATGACTTTCAAAATT
ATGTAGAGCTGTACAGTTTCATTCGTCGAAGGTTCAAAGAATTTTTTGGT
GACAGAGAAACCGAtaatacttttcaaattttcaaaactgaaaaagtaTC
ATCTGGTTATGGGAAAGATTCTGTGCACATTATTGAATGGTCCAACTGTA
CAATAACAAGAGATGAATGCAAAAAGGAACAAATAGAACGTCTCAAATCG
CGTGTGTTCGATGGAGATGTGgttaaaaatgaattcaaaCAATCGTTCCA
AACAGACTTTTTTATTCTGGCTttatctttcaaattatttggTGTTTGTG
ATGTTGACCCACCAGTTGTTCAAAATCCGATTCCTGACCAAAACCTTGGG
TTTTGTGGACCGCTGACTTATCAGATTCCCGAGAACACATTCAAAGATTC
AAACGATGGAAACACAAGAGCTTTGCAACTAAAGATGACTTTGGAGAATG
GTGAGCAGATTCCAGACACTTTCTTCATTCAATTCAATGAGCAGGAGCAA
ACGATCTATGGAGTATTGGCGGCTGAAAAGGATACAACTCTAGCTGGAGA
GTACAGTTTCGCCATTATAGCtaaaaacagtaaagaaaaGACCGCaaaag
caattttaaagttgACAATCGATTCAGCCAAAAAGACAGTCAGTCATGTG
TTCAAGCTCAATTTTTCATGGAAGGAGAGACAAAGTCAAATTGAggtttt
gtcaaaagttgcaaACAAATTGGCAACGTTCTTCGACTTTTCGGGAAACT
TTTATATTTATAACTACAGGGTGCTTACTACTTTCGGTTCGTTGACATTC
ACTACCTGCAATGCTAAGTATTCTCCATGTGACAGAGATTTGATTGCTGC
AATCGAGAGTAAAGCCATCCTGAATGGACAACCTAGTAGTTCGCTAAGAG
AATCTTTAGGAAATAAGTACACCATCTTTTCTTTTCGAAGACTTCTTATT
GGCGATTTCTGCTTACCTCAACCAAAGAAGCCAACGTACGTCAAACCATT
TCAACCATTCACCATCGAAATATGCAAAACGTTTCGAAGAAATTTTGACT
CGAAAACATTCGTGGATGAAGAAGAcgtaaaattgaattatttggTGACA
AAAATTGATAACAATTTCGTGAACGCCGAGTCCTCGTGGATTTCAGTGGA
TTCTTCAAGTCATCAGTTCATTGGCATCGTCCCAACAAACATCTTCTCGG
CTACACAAAGCTTGAAATATAATGTCAGTGTTCGAGCAATCGACTCAGAT
AACATGCATGCCAATGGTGACGTTCTAGTTACGGTTAGAAGGG

Run BLAST on NCBI

transcript from alignment at scaffold_243:773673..785918-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054659 ID=TCONS_00054659|Name=TCONS_00054659|organism=Clytia hemisphaerica|type=transcript|length=12246bp|location=Sequence derived from alignment at scaffold_243:773673..785918- (Clytia hemisphaerica)
ATTAGCTCAAAACCAGGTTATTGAAGAATTTTATAGTTTGAAAATGAAGT
CATTAGGAAGTAAAAAGAAATATTTCATCGTTTTCACTATGATAAGTATG
CTAGGCTTCATTGTGTTTTATATGTTTAAGAAAGTGATGGCAAAGCGGGC
ACAATATCTGAGAGATTTGGCAAGGCATGATGGTACTAAACATGGAGAAT
CCGCCATCTTTGAAGAACAATCAGCAATATTAGAAGAAAAAGATGACGAG
AAAATTGACCAAGATGACATGAAGGTCGACGTCACTCAATATTTCGAATA
TCAAAAATATGATCCCGAAAATCTTTGGGAGCAATACAAAAAACAGCCAA
GTAGGTTCTTGAATGTTGCAGCGTTATGTGAAAGTGATAGCGAGGATACG
ACACCAAGAATTGAAATTCAAATATATTACCAAACATTTGTTCATTTGTT
TCGTGTCCACATCTTATCGTTGACAAAAATGTTATCTTTCCAGACAAATG
ACAGTAAGAATATCAAGTTAAAAATCATGCTCAGAAGAAGTTCAAAAACA
TGTTTCTCCGATGTTACTGACATTTATCCATTTGGAGAAACAATTGAATT
TTCCGACAAGTTCTCATTTGCAATCAAATTCAAAGAACTACAGGAATACA
TCATCTACATATCTGTCTGGAATGTCAACATATTTCACCATGAGATCTTG
TTAGGAGCAGCTCATATGGATTTGAGCAATTACAGTGATTTCACCAATAA
AAACATAATTTCAAGTGACATTGTCCCTGTCAAAAAGGTGTGTAGAGAAA
CAATAAATGCAGCAAATTTCAAATTGCAGTTTCCCCAATAAATACAACAC
CGAACCTTGCAATTGAAATATTTTCCTCTCTTTCTAGGACAAAAACATTT
ATGGGCACATCTTGGTCGGGTTGTGTTATCTACCGAGTGTTGAACGGTTG
ATGTGCGTGGTGATGAGCGCTAAAGACTTGAAAGATGATGTCACCAATCT
TTCCATTCTCAATAATGTCATCAGTGAGTGGCTTGAAAATGCCTACACTA
TAATTCTAACTCTTTCGAATAAAGGTCCTACGGAGGTGTTTAGAACAGTT
TGTGAGCCGTAAAACATAGCTCTAACCTAATGACATCCCTGTCTCTCTGC
TTCACACGTTTGCTCCCTACTACGTGTATACTCGTAGTAGAGGAAGGAGC
CTCTGAAAGTCAAACTTTCGATTTTTTTTCGAATTCCAAGAGGTTGAATT
TTCGAATTTCTGAAAAAAGGCTACGCAGTAAACGTGTTAAAGTTGCTTCG
AATCCATGTCGGTGGTTCTTATAACGAGAACGCAAAAAATGTTCGTGAGA
GAAGTGTTGCTGGCTTACTCGATACCTGATAATACTGTGGTTTTATGTTT
TAGATCCCTTTGTAGACGTGTTTTTGGTGAACGATGGGAAGATGATCAAA
TGTCATTCCACTAAAATATTACTCGATGATAAATCACCTGTTTTCAACGA
AGCTATCGAGTTTTACATTCCGAATCATCAAATAGAAGGATCGGATATCC
ATCTGATTGCAATGCATAAATACAATCGTATCACGAACACTCTGATAGGG
AAAGTCATGATTGGAAGTCATTCCGATGGTCATTACAAATCACACTGGAC
TAAAACATTAGCTAACCCAGAAAAAGTCATACCATTCTGGCACCCCTTGA
CACGATGACGTCATGATCAAGGAAATAAGATATTTTTCTTTTGTTTAGAA
ATTTGATCTCGTGTATATGTCGAAAGATCTATTTGATCAAATAGGACTAA
AACAAGTTTGAGATTTGAAAATTTCGAAATTGAACCAGATTGAACGCATA
GTATGTAAGCAAATAAAGGGAAATCAGGCTTAAATATGAGAAAACATTTG
AGTATCTTGTGCTTTGGCGTTTTATTTTTGGTTCTTGGTATTGGTTTAGA
AACTGCAGGTGTAGCAGCGCCAGAATGGTTTAGAAATACCAATATCACAG
ATGATGCTATAATTGTTCTCAGCATATGGAATCGTTGTCAAGAAGGACCA
GCTCTGAAAACACCACCAAAAGATTGTAACAAAGGAAAAGTATTATTATT
TGGAAAAGATGATTTTGGTAAGTTATTCTATTGCATTTTCATCATTTATA
CAAGAAAAAGATACAATTAAAAATGATAATTTACTAGAAAAATCATTTCG
AATTGATGAATTCAAAGGTTGAAAAGTTTATAAAAAAATTGAAAAAGAAG
AAACTGCAGACTGCTAATTCTTTGAAATGGACTTAAATTCAGACAAAGAT
TTTGCTCGTGAAAGTATAAAAATACGGTGAGAACAAAGAAATTGCTCTTA
CNNNNNNNNNNNNNNNNATAACAAACTGATCATCTTGATGTGCTTATAAA
GCTCGGAGACAGAGATGGAACAGCAATTAACTGAAAAGACAATGCTGTAC
ATATTCCAGCCGCGGCTTTCTTATACTTTCTTACTGTGTTCGTTCTATTT
CCATTCCATTTTGATGTTTTAAAGGGTTTAATCAAGTTCACTCTCTTTTT
AGCGCTGGATTTGATATTGGCACTTCACTGTGGTTCCATATTGATTTGCT
TCATCGGATTGATCGCTGCAATCAGCATGTTTTATTGCAGAAACCAAAGG
AATGCCTGGAGACATTGTTCACTTTTCACATCAGCAATTATTTTGATTTC
TGGTGAGTTTTCGTCCTGAAATATATTTGATTTCAAATGAAATTCAGCCT
CGATATAGAAATGTCAGATAAGGACTTTTACCAAAATTTATCCAATTTTT
AGGGTTTTTAAAATAATGGCCAGTGAACCATAGTGTAAAGGCAGAAGTTT
CGAATGGGATGTATGCAAGGTCGTGGGTTCAATTGGTAGTCGGGTTGAAT
CAAAGATTTTAAACTGGTGTTTGATGCCTCTCTTCCTAATACTCATCAGT
CTAAGAGATTGATCACGGGTGATCGAGCAAGCTAGGGAGACAGGCTACCT
TTGGATCGCTAGAAAGAGCTTTCGGGTTGCTTCCGACTGAAGTCGAAAAA
CTTACTTACTTTAAGACAAGTCAAAGAAATGCGTGAGATTTGAAGATTTC
TAGTTACAGTATGTGGCCCCCAAAACGGCGATCAAATTTGAAATTTCTCT
CAAATCTAGAGGAAAAGAGATTTTACAAAAATTTTTGCTGCATGAAAACC
TTTAACATCTCTACTTTATTACCTGGAAGTTCTTTTTCAAAATTTTTCAA
TTTCAACAATATTTTTCAATCGCTTAAAGATAGGTAGCTTATTTCTAATG
TCCCCCAAAACGGAGGTTTGAAATTTTAGCGATTTCTCGAGATATCTATA
AGATATGAATACAAAACTTTGACCATAGTTTTGAAATATGATTTAGAGGG
TTTGGGGCATAAATTTGTTTGATAAAACTTTTACAGTATACCCTGGTTGT
CAAAATGCAGGTTTGGGGCCCCCAAAACGGAGGTGTAGTTAAAATCAAAT
TATTAAGCCCAGTGGTAATAGGGGGGAAAACTATGAACATATTTGTGTTT
TCCCTTAAATTTATGATCTGATGGATGTAAAATTTATGATTTTTATGAAA
TATTTCAAGATTTTCGATATTGCAAAGTCCAAACTGAAAATTTAGAAATT
TTCAAAATGACAATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAACGTCTTAATCAAGTTTTTGAAA
ACAAAACTCTTTTGAAAATAGTTCCATTCATGTATGGAATAAGCTGTGAA
AATTTTAGAAAAAAAGCCTAACTGAAACTAAAAATATTAAGCTTTAAAGA
TATTTTTCTCCTATATTTTCCAAAAAAATTACAGAATTTGCCGTTTTTGC
TGATTCAGCGAAAAATTTTATGTATAATGTTAATTTTTTGTTATAAACTA
TTAACTCAAGGTGATAGGATTAGAATTCCAAGATTTTTTGCTTTTTCTCA
TATTTAGAATTTTCGGATTTGTCAATGCTGATTCTAGGGATCCAAAATAC
TGGTTGACCTTCAAGATGCTATATCTTTTACCCAGCCTCTAAAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATAACTTATT
TTCAATATCCAAGGAGCTAGAGTGAGTTATATACAATTTTTATCTAATTT
TGGTGTTAAAATATTTCCTTTAGACGCAAATATGTTATTATGAATCCGTC
TCAAACCAGCAAAAACATGCTCATTTTTAAGTATAGCCGTCATTCTTTCA
AAATAAACAAAAATCGTTTAATTCTGATAAATCTACAAGTCAGAATCTTC
ATTTTAATGAAAACCTCCGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCAT
ATACTGTACATAGTTGAAAAATAGGCCATATACTCATCGACACGTCCCCA
TACCGTCCCATACTCGAGTTCCGAAAGTGACTCCTTCCAAAAGCTTGATT
TTAATTAAATGATATATATATTGATAAAATATTGAATTTTAGCGGCATGT
GGCGTAGTAGCAGTGGTGTATAACGAATACAATCATAAAGAACATTTTCT
AAATTCATATTTACGTGGTTGGGCGTACATGATGGCGGTATGTGGCGTTT
GCTTGATATTCATTTCTGGTGTCATCCTAGCGGTGTTGATCTTCATCAAA
CCTAGAAAGAAGATGATTTATGCACAAAGTAGAAGAATACGTAACAATGA
GAATGAGGTGGAGCTAAAATAAGATAAGAATAAGAATGTTTTTATTGGTA
ATTTTATTCATGCAGGATGAGATACTTCACAAAATATTACGTTAGTAAAA
CACTTTCGGAGCCAATTGTTGTTGTGTTGTTGATATTTAGAAGTTGTTAC
CTTCTTATATTACGCTTAAAATTTATATCGTGACAAATTGTTTTTTTTCA
TTGAGTGTCGACAATGAAATAAAAAATAGGATTTCAGTTAAGCTGTCTGT
GAGTTTAAAGTAACTATTATTTATTTGTTGAATGTCTGTAGAGAATATAT
TTGTAATTGTTAAAAATAAATTTGAAATTATTAAAATATTATGGCAAGAG
GATCTTTATTGACTTTTACCNAATTTGAAATTATTAAAATATTATGGCAC
GAGGATCTTTATTGACTTTTACCTTATGGTTGCTCTTGACAAGTTTAGCA
GCATTATCAGCCAGCATCTTTGGAGATGTTTGGTATGTTTACGAGCCCAA
TGGAACGACCACAGGTTTACTAAAGAAATGCTACTTTGACATCCAGACTA
AGAAAGTATGCATTAACAGAAAAGTGTTTAAATTCAAAGAAAAGGATTTC
GGTGAGTTTTGTTCATAAGTGTAAATATTTAACTTGAATTTTAGCCGGTC
TCACCTCACTGTCAATTGGTACTCGAGCGCAAAACAGCTAATTCAAGATT
AAACCTAACCCATACCAACCCACCCACGGACGTTTTTTATAAATTGAAAA
ACTTACCGTGTGTCGGTCTGCTTCGGTTAGCGAGATTCTGTGTCTCAGTT
TGTCCCAGTTTTCCAGGAGTGCTCTTATACCATTGCATTGATGCGTTAAA
TAGACCATCCCTGCAGAAACATCTAGAGATTTGCCTAAAAATGTCTGAGA
CACGGAATGTTGCTTAACCGTAACAAACCGAACTCCGCGTTATCTTTTCA
GTAAGCAGTACAGGTTAGATTAAAACTTCTAGCCAAAGTTTTGAATAAGA
TATTCTTTTTTCAAACGGGGATAAAAAGTCGGTTTTTACGGACTGCACGA
ATTTACAGCAAAAAACTATTTCGATTTTGTACATTTCAGATTTGGATGTG
ATATTGACAGGGCTATTGGGCTCCACACTTCTCATTATATGCAGTATTTC
GATAGCGACAAGATTGTACTGTTCACAAAAAGTGATCGTCCCTACCTGGA
AATGTTATACCACACTGATTGCAGTTTTGACTATCACAGCTGGTAATGAA
CCAAAGTCTAAACTATTCTTAAACTTGTACGTACACTAGCACGTGTGCAT
TTTCGGACTTTTTGAAAATCTTCTTCATTAGTAACTTGGATGATTTAGCC
TTGATTAATTTTGCGCATAATCGCACGATGGGTTATTTTTTCTTATTTGG
CGTGCCCTCAAAGAGAGCAATTAATCGTTAATTGCATCTTGTAGAGAGCA
ATTAATCGTTAATCACACTCTTCGATGTCACACCAATGTTTACAAAATTG
ATTTTAATGTTTTTTCTTACATTTTTTTTACATCGAACGTTTTAATTGCA
TTAGAAATTCATTTTGTGAGAAAGAAATTTTATAAACAACAATAAAAAAA
ACATAAAGAGAAGAGAAAAATATAAAACTGTCAGTGTAATTTCTATAATT
TACTTTCCTAACTGGGAAAAAGTAGTGAAACCCATTGTGCGATTAGCTAG
TAATCACATAATAACTCGTACAATTCGAAAATTGCACTCGTGATTTTTTG
TTTCGAATTTTCCGCCTCCTTTTTTTTCGACTAGTTTCGTTTTAAGGGTC
CACCCCGTGCGGGCTGGGATGAGATAACGAGAATTCCCAGAAAACGATTT
TTTCAAAACCTTCATATGCTAATATATTTTTTTCAAGGTAACTTCATTTA
ATATTGAAATTCAAATGTTAATAGCCTTACCACTGGTTGATACTAGTCCC
AAATATTATATTAATTTGATGTCACATAATTGACTTCCTAGTATAAAAAC
TGTGGGTTGTCCCAAATCGTTTCAGTCACTCCTTCATCCTCGAAAGCGTA
CAATACGTAAACTCGCTAATAGAAATTAAAACAGTTGCTTTCTACCAAAG
CAAAGTGATTTTTATCGATTTTCTGAATTTCCCCCATAATACGAGATGCT
CTCTTTGTTTTTAATGGCTTCATCCTATCCAAATAGGAACTGGTGATAGA
AAAAGATCGTCAAGGGTTGTTTGTTTAGTGGGTACGAAAGCGTAGAAATA
ATACGAAACTTATTATTCTTTCTTATAGCTTGTTCGACGACGGCAACTAT
GGTTTACTACATTTACGATGACTCGGGAATGCTTATAGATAAAACAAGTG
GGTGGACAACTACAATAGGATGGGTGGCAGTTGGAGAGCTAAACTTTACC
ATGGTTTTTGCTGTCCTTTTGAGATATATTGGTCCAAATCATGGAAACAT
AGTGAATGGAGTATATGAAACACGGAGGGGCGAATATGAGATGAATTAAA
ATCTCTGCTGGAGACTGCGTTTGGTAACACAACAAGTTATGACGGGAAGA
TGAATCATTAATTAAGTGATGAACAGTTTCCTAAGGACAATCTTCAATAG
ATGCCGATAAACAACACTGCTATTTCTTTCATTCTAGCTCCCCTACCGTT
CAACGAAAATCGGCCAACAGCGCCGTCAGGAAAGGCACTTTGAATTCCAA
ATTAATATTTCAAAGATCAATGAAGAAATGCCCGAATAATATTTGGCAAA
AAAAATCAAAACGCCTTTGATTTGAATTTACGGAACTTTTTTCGTAAACA
ATTATAAAGTATAGAATTAGTAATAAAAATCAAAACGAAATAAAAAAATT
CATACCTTTTTACTTTTCAATTTTGTTCATGGAGTAGCTTTGTTAATAAA
ATTGTATATATGATTTGAACTGTTTTCGATTTCGAAGAAAATGAAGTACC
AGGGGTTGATCTTTCTTCTCCTTTTCACTCGCCTAAAAACGTAAGTTAAA
AATCTCTCAACGAACACTTCCTTCGGTTGGAACACCAAATAAATCGGGAC
TCGAGAATTGAGACTTAAGGTTGGCTCCAGATTCCCATAATAATTTCTAG
CTCTATAAGTTACTCATTTTAATAACAGCATAGTTCCTTGCCAGCATAGT
TCACCATATAATTGAAAATTATTTACCGTTAGTTTTCTTTTCTCAAAACG
TCAGGATTTCGTCTAATTTTTCCTGAAGGGTTCCTTCTTCCAAGTGACAG
AAAAAAGAATTCAATGAATTAAGATTACTATAGAACCTTAACAATTGAAG
CTCAGCGTTCCATGAATAAAGAACTAAACCACAATTATCCGTGTCCTTCG
TTGTGTATTTGAAATATTTTTACTACATTGAATTAGAATGATAAGTAATG
TAGAAAGAAGTTTAGAGCTATTATATTTAGTAAGCGCGTATTCTTTTCTT
CTTATTCAATTCAGGATTGAAAGTGCAGAGCCAGTGATCAACAACGCCAT
AAACGAGATTAAAGTATCTTACTGTTCAACGCAAGAATACAAACTTGACG
CAAATGCTTATTCTGATGCAGAAGACGGGAATTTAGTAGGTGGAAAACTT
ACATTGAAACTTCTAGATGCGTCTGCAGCAACCTTCGTGCCAAATGATGA
GAAGCCAGTACAATTGGTGGGAACTTCACTCTTTATTGTTCCAGTATCGA
CAACACAGAGTGAATTGAATCTCATTCTTCGTGTGATGGATACATCTGGA
TCGTTCAAAGACGACAGGTTCAAAGTCACTTTCAACAATAAAATCTCCGT
ACGTGAAATCTCCTTCCACTTCACTTTGAGCAAGGTAACAACAGGAGACG
TGCAGATACAAGATCTCTTCAACTTTTACCAAGCGCTGAAAGAATTGACC
ACTTGGAAGACGAGAAACTTTGGTTTAAGTGAAATCACAAATGTAGCAGA
CAAGAAAAAAGAAGTGGCTGTATTCGATTGTGGAATGACGCAGTCTACTT
GCCCATTACAGACCATTTTGAATCTGATCAATGACGTAAAAGATCAAAAC
CCAGGGCCAACCTACACGCTCAATTTTGATAGTAAAATGGCAGCAATAGA
CCTACAAGCCAGTGGGTTTCGCTGGGAAAAATTTGACCGCTGTATTGGAG
TGTCTGGAGTACCAGACCGTGACATAAACCTTGAATTCTGGTCGTTTGCA
GGAATCCAAGCGATTGATCGAACACAGGTCATCCAGGTAGAAATTCCCGA
CGGAGGCTTTACTTATGAAAGTATCAAGCAAAGTACAATGACTCTCGAAA
TACAATCAGGACGCAATGATCCAACAATAGCTTTCGATAACTTCTGGATT
GGCGCTGAACTGGAAGGTAGTAAATGGATCATATATGCAGTGAGAACAGA
CCGATTTTATGAGTATATAAGTTTGACAGGGAACTTTTTCGAACACAAAG
GGATCTTATATGCTCAAGTGTTTGTCTCTGCGTCAGTTCTATTACCGATC
AGCGTCGAACGAAATGATTATTACATGTCAGTAGAAAACACAACGAAACC
AATGAACAACTACATTGTTGAATTCTCCGTTGGAATCACAGGAATTGCTA
AACACATATATCCCAAACAAATCAACATTTTTTTATCAAAGTTGTATGTC
ACATTTGGTACATCATACAAAGAATTGATCTATGTCAATGATTACGTCAT
CGAATCGTTTGATGGGCGAAATGGAGATGGAGTTATCCGGTGGAGCTTGA
TGATGGACAAATGTGACTTTGACAGAATTGAATTCATCCGTTCAAAAATG
TTTGAAAGTGGAAGCCAGGAAGAAATCAATAATGATTTTAAACTCCGAAT
GAAAAGAGAATATGACTTGAGATCGATAAAGGAAACTCTATCAGGTGACT
GCAACCTATCAAAACCAAAACAGAGCAGTCCGATCGGCCCATACCAGATT
TCCTACTGTGGAATAAACAGCTTCAAACTAGCAGACGATACTTTTATCGA
CGAAGAAGATGGCAATCTAGCGAAACTGACCGCAAAAATGACAACCGAGC
AAAACAAACCAATTGGCAGTGACGATATTATTCAATTCGACACAGCAACT
AAGATCATCTATGGATTGCTACCTTCGACATACAATCCACCACTCCAGAG
AGAAATCACATATAAATTAGTAGTCACTGATTCATCAAACCTTTCTACAG
AAACTGTCGTTAAATTTATTGTGTCGGATGATTCAAAAACAATCCCTTAC
AGTATCTCCATAACAACCAAGTTCACGGCACAGTCAACAAGCTTCAACCA
GAGTCCAGGATTGGCATTAGCTTTTAAAGCTGGTAACTATTTTGGTGATA
ACGGCAATGGATTTTCTTTGGTCAGCTCACAAACTTCTTCTGATGGGAAT
CAAGTCATAAAGTTCGGAAATTGTACATGGTCGACACCTCAATGTGACTT
TGTTAACTTAAATTTTTACAAAAACAAACTTCTGGCCACATCAACATCCT
TGAACGCACTTCTTGATTTGAAACCAGAATTTGAAGTGTTGAATGTGGAA
GAAGTTATCAAACCTCCCTGTGACAAGGACAATCCACCAGAAGTCTCAAA
TCCTTTACAAGATTTATCAGTTACAACTTGTGCAACGTTTATTATCAACA
TTCCTGCTAATACCTTCAATGATGTCGAACAAGGAAATACAAGGAATCTG
GATCTTTCCATTCATTTTTCTGGACTGCAATTCGGACAAACAGAAATGCT
ACATTTTCAGGAGACAACTCAAATCATAGCAATTGTTGCAGCAGAAAGTG
ATTTAAATAGCTACAATTTTGAATTGAAAGCCACTGATATTGGTGGAAAT
CAAGCTATTGACACTTTCAGTGCCCAAGTTCAAAAAGAGGAGAAGGATCC
GTCCCATATCTTCACATTTCAGTTCAGAATTCTCAAAAATGACTTTCAAA
ATTATGTAGAGCTGTACAGTTTCATTCGTCGAAGGTTCAAAGAATTTTTT
GGTGACAGAGAAACCGATAATACTTTTCAAATTTTCAAAACTGAAAAAGT
ATCATCTGGTTATGGGAAAGATTCTGTGCACATTATTGAATGGTCCAACT
GTACAATAACAAGAGATGAATGCAAAAAGGAACAAATAGAACGTCTCAAA
TCGCGTGTGTTCGATGGAGATGTGGTTAAAAATGAATTCAAACAATCGTT
CCAAACAGACTTTTTTATTCTGGCTTTATCTTTCAAATTATTTGGTGTTT
GTGATGTTGACCCACCAGTTGTTCAAAATCCGATTCCTGACCAAAACCTT
GGGTTTTGTGGACCGCTGACTTATCAGATTCCCGAGAACACATTCAAAGA
TTCAAACGATGGAAACACAAGAGCTTTGCAACTAAAGATGACTTTGGAGA
ATGGTGAGCAGATTCCAGACACTTTCTTCATTCAATTCAATGAGCAGGAG
CAAACGATCTATGGAGTATTGGCGGCTGAAAAGGATACAACTCTAGCTGG
AGAGTACAGTTTCGCCATTATAGCTAAAAACAGTAAAGAAAAGACCGCAA
AAGCAATTTTAAAGTTGACAATCGATTCAGCCAAAAAGACAGTCAGTCAT
GTGTTCAAGCTCAATTTTTCATGGAAGGAGAGACAAAGTCAAATTGAGGT
TTTGTCAAAAGTTGCAAACAAATTGGCAACGTTCTTCGACTTTTCGGGAA
ACTTTTATATTTATAACTACAGGGTGCTTACTACTTTCGGTTCGTTGACA
TTCACTACCTGCAATGCTAAGTATTCTCCATGTGACAGAGATTTGATTGC
TGCAATCGAGAGTAAAGCCATCCTGAATGGACAACCTAGTAGTTCGCTAA
GAGAATCTTTAGGAAATAAGTACACCATCTTTTCTTTTCGAAGACTTCTT
ATTGGCGATTTCTGCTTACCTCAACCAAAGAAGCCAACGTACGTCAAACC
ATTTCAACCATTCACCATCGAAATATGCAAAACGTTTCGAAGAAATTTTG
ACTCGAAAACATTCGTGGATGAAGAAGACGTAAAATTGAATTATTTGGTG
ACAAAAATTGATAACAATTTCGTGAACGCCGAGTCCTCGTGGATTTCAGT
GGATTCTTCAAGTCATCAGTTCATTGGCATCGTCCCAACAAACATCTTCT
CGGCTACACAAAGCTTGAAATATAATGTCAGTGTTCGAGCAATCGACTCA
GATAACATGCATGCCAATGGTGACGTTCTAGTTACGGTTAGAAGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034428	XLOC_034428	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_243	supercontig	scaffold_243:773673..785918 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04751	0.0228338	0.0313059	0.0488695	0.0136036	0.0214994	0.739237	0.758843	0.272017	0.29482	0.740151	0.469751	1.59	1.41783	1.91559	2.85122	1.38082	1.62173	1.22781	1.50363	1.53547	1.29948	0.852269	0.789824	0.529423	0.803074	0.269147	0.346903	3.90751	4.51956

Blast

[Close]

BLAST of TCONS_00054659 vs. Swiss-Prot (Human)
Match: SYT9 (Synaptotagmin-9 OS=Homo sapiens GN=SYT9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.821e-24
Identity = 69/215 (32.09%), Postives = 115/215 (53.49%), Query Frame = 2

Query:  599 FSDKFSFAIKFKELQEYIIYISVWNVNIFHHEILLGAAHMD-LSNYSDFTNKNIISSDIVPVKKDKNIYGHILVGLCYLPSVERLMCVVMSAKDLKD-DVTNLSILNNVINPFVDVFLVNDGKMIKCHSTKILLDDKSPVFNEAIEFYIPNHQIEGSDIHL-IAMHKYNRIT-NTLIGKVMIGSHSDGHYKSHWTKTLANPEKVIPFWHPLTR*R 1231
            F + F F + + +L+   ++ SV++ + F    L+G   +D   + +DF  + I+  DI  V  D    G ++  LCYLP+  RL   ++ A++LK  D+T  S      +P+V V L+ DG+ +K   T    +  +PV+NEAI F +P   I+   IHL IA+  Y+R+  N +IG   +G+ ++   + HW++ L+ P K I  WH L   R
Sbjct:  285 FDEVFLFPVPYNDLEARKLHFSVYDFDRFSRHDLIGQVVVDHFLDLADFPRECILWKDIEYVTNDNVDLGELMFSLCYLPTAGRLTITIIKARNLKAMDITGAS------DPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENID--QIHLSIAVMDYDRVGHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLVEKR 491

The following BLAST results are available for this feature:

BLAST of TCONS_00054659 vs. Swiss-Prot (Human)

BLAST of TCONS_00054659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYT9	6.821e-24	32.09	Synaptotagmin-9 OS=Homo sapiens GN=SYT9 PE=2 SV=1	[more]

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TCONS_00054659 (transcript) - C. hemisphaerica