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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054660 ID=TCONS_00054660|Name=TCONS_00054660|organism=Clytia hemisphaerica|type=transcript|length=1806bp
GAGAGTTGAAGGTTGAGATATGAAACTTGAGAAGTCTCAGGTTTAAAAAG
CTCAAAAGAAAAAGTAGCAAATTTCAATTGGCAAAAGCTCATTCAGTTGT
ATGTATTGTACTTTTTCcccaatgtttattttttctgtCAAGGCTTTCAA
TGAGATAAGCTCAGTAACATAGTATAAATTGTAAAATCAAAACGTAGTCG
GCCGAGTCAACTAACGTGTTGAGAGGGAGAAATTCCTTTGTAGCGCAGAT
GCAGATAATTCAAAAACgcttaGTGGAAAGAGTTGATGATGAGTGAGCAG
CGACTTTTAACGATATTTGTGCTATTGGTATTCATTCCAACATTATCAAG
CTTTATAATCGACAAAAATACAACTCTTAAAGACTTATGTGCATCAAATC
CGAACATAACAAAAGAAGATTGCAATTGTGAAAAGCATCAGTTCTTTTGC
ATGTTGCTGCAGGATCGTGATCGACAAAAGGGTTCGAACAGCACACCACA
AGTACCCCTTCGTATTACTTGCGATGAGGAAATGGGATATATGAGAGGTG
TGAGCAATATTATCATAGGAGGGATCGGCATAATAGGGAATGTCTTGGTG
ATCACTGTCTCATTCCGCTATTACTGGATGACCACAAGGTGTCATGTCTT
GATTACTATTTTAGCATTCAGTGATCTCGCAACCTGTATCATTCGTCTGT
GGAGAAACATACCTTTCTTATGGACTTGTCATTGGGTATACAGCGCACTA
TCATGCAAAGTTGGAAGCAGTCTTCTAAATACTGCATCCTATATATCGAT
GGGGCTGATCGTTTTGATTGCTGTTGAACGTTATCTTGGCATTTGTCATC
CGTTTCGAACTGTAATGACTAAATCACGACTTGTATTTCTCCTTCTGGTA
AACGTCGCAGTAGGGTTACTTATCACTACGTCACTTTTCCTCTACACAAA
TCTCAATGTAGAAACGAAGCAATGTGAAATCAAGTGGCCAAGCAAGAAAG
TCTCGCTCTTTTATGCCATCAtcaatttgattttcttttcacttttacCA
GCCTTAGTCCTAGCCATCCTCTACCAGCGCAtcataaaagttttaaaaag
caCAACACGGAATCTCTTCAAAACCAACTCGATGTGTTTCAATTCGGAAA
AACGAAGAATAAAAGATAACGAACGTATCATGAAAATGGTGGTCACGATT
TCAGTCTTATTTGTCGCTCTTGTATTCCCTAACCGTATAATGTGGATCGC
CAAAGACAGTTTAGAATTAGAAGGTATTCGGCCATCAAAAGACTTTCATT
TTGCATATGTTTTCTTTGCTTTCATTATTTATTCACTACATGCGATTGTA
AACCCTATCATTTATTCTCTGATGGACAAAACCTTCCGTAGAAAAGCTAT
CAATACTTTGATGTGTAAAGCTATACCTCGAAATAAAACAGACATATGGG
CTAACTCGAACACACATGCTAGCCGAATAACGAGGCTGTCaacctttaaa
aaagaaaaccgaTATTCACGACAAATAATGACGTCAGAAGCTTTGTAAAT
ACACTTGAAGTTACCCAAACTCAAGGTATCAGTGTTCATATTTCAACGAA
ATCCAAGGGCACTATCTCGAGGCACCAGTTGCTTTAAACAATACattgga
ctgaaaaaaaattatgattaaTGACAGTCAGTAGTCAATGATTATAGCTT
ACGAATATATTAATTGTAAATAAAATAGTTCTTCCTTATTCTGAACATAA
ACTACTTGATGATGCAAAAAGTTGAATGCTGTTTAACTCTCTCACGGTTA
CACAGT Run BLAST on NCBI transcript from alignment at scaffold_243:787171..789287- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054660 ID=TCONS_00054660|Name=TCONS_00054660|organism=Clytia hemisphaerica|type=transcript|length=2117bp|location=Sequence derived from alignment at scaffold_243:787171..789287- (Clytia hemisphaerica)
GAGAGTTGAAGGTTGAGATATGAAACTTGAGAAGTCTCAGGTTTAAAAAG
CTCAAAAGAAAAAGTAGCAAATTTCAATTGGCAAAAGCTCATTCAGTTGT
ATGTATTGTACTTTTTCCCCAATGTTTATTTTTTCTGTCAAGGCTTTCAA
TGAGATAAGCTCAGTAACATAGTATAAATTGTAAAATCAAAACGTAGTCG
GCCGAGTCAACTAACGTGTTGAGAGGGAGAAATTCCTTTGTAGCGCAGAT
GCAGATAATTCAAAAACGTAAGTATACAATTAGCACTCTTCCAACCTTCT
TTTTATTCGGGGATTTATTTGATGGAGGCGGGGGATTATTAGCTCATTTT
CCTATTGACGCGGTATAAATTTGCGAAAGTGTACTTAAGATATTAAAAGT
CTGCAAATACATCTGTTTTAATGTAAAGAAAAATATAAAACGACAGAGAA
AATCTAACATTAGCTTTCTTTGAAAACTATACAAAGTTGCAATTATCGAT
GATTTTAACACCTATCAAAATACTTTGTCCTTGAAATTCAGTACGTTGAG
AAATACGCCATTATTTTTTCAATTTCAGGCTTAGTGGAAAGAGTTGATGA
TGAGTGAGCAGCGACTTTTAACGATATTTGTGCTATTGGTATTCATTCCA
ACATTATCAAGCTTTATAATCGACAAAAATACAACTCTTAAAGACTTATG
TGCATCAAATCCGAACATAACAAAAGAAGATTGCAATTGTGAAAAGCATC
AGTTCTTTTGCATGTTGCTGCAGGATCGTGATCGACAAAAGGGTTCGAAC
AGCACACCACAAGTACCCCTTCGTATTACTTGCGATGAGGAAATGGGATA
TATGAGAGGTGTGAGCAATATTATCATAGGAGGGATCGGCATAATAGGGA
ATGTCTTGGTGATCACTGTCTCATTCCGCTATTACTGGATGACCACAAGG
TGTCATGTCTTGATTACTATTTTAGCATTCAGTGATCTCGCAACCTGTAT
CATTCGTCTGTGGAGAAACATACCTTTCTTATGGACTTGTCATTGGGTAT
ACAGCGCACTATCATGCAAAGTTGGAAGCAGTCTTCTAAATACTGCATCC
TATATATCGATGGGGCTGATCGTTTTGATTGCTGTTGAACGTTATCTTGG
CATTTGTCATCCGTTTCGAACTGTAATGACTAAATCACGACTTGTATTTC
TCCTTCTGGTAAACGTCGCAGTAGGGTTACTTATCACTACGTCACTTTTC
CTCTACACAAATCTCAATGTAGAAACGAAGCAATGTGAAATCAAGTGGCC
AAGCAAGAAAGTCTCGCTCTTTTATGCCATCATCAATTTGATTTTCTTTT
CACTTTTACCAGCCTTAGTCCTAGCCATCCTCTACCAGCGCATCATAAAA
GTTTTAAAAAGCACAACACGGAATCTCTTCAAAACCAACTCGATGTGTTT
CAATTCGGAAAAACGAAGAATAAAAGATAACGAACGTATCATGAAAATGG
TGGTCACGATTTCAGTCTTATTTGTCGCTCTTGTATTCCCTAACCGTATA
ATGTGGATCGCCAAAGACAGTTTAGAATTAGAAGGTATTCGGCCATCAAA
AGACTTTCATTTTGCATATGTTTTCTTTGCTTTCATTATTTATTCACTAC
ATGCGATTGTAAACCCTATCATTTATTCTCTGATGGACAAAACCTTCCGT
AGAAAAGCTATCAATACTTTGATGTGTAAAGCTATACCTCGAAATAAAAC
AGACATATGGGCTAACTCGAACACACATGCTAGCCGAATAACGAGGCTGT
CAACCTTTAAAAAAGAAAACCGATATTCACGACAAATAATGACGTCAGAA
GCTTTGTAAATACACTTGAAGTTACCCAAACTCAAGGTATCAGTGTTCAT
ATTTCAACGAAATCCAAGGGCACTATCTCGAGGCACCAGTTGCTTTAAAC
AATACATTGGACTGAAAAAAAATTATGATTAATGACAGTCAGTAGTCAAT
GATTATAGCTTACGAATATATTAATTGTAAATAAAATAGTTCTTCCTTAT
TCTGAACATAAACTACTTGATGATGCAAAAAGTTGAATGCTGTTTAACTC
TCTCACGGTTACACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054660-exon-scaffold_243-1575043694:789021..789287 | TCONS_00054660-exon-scaffold_243-1575043694:789021..789287 | Clytia hemisphaerica | exon |
| TCONS_00054660-exon-scaffold_243-1575043694:787171..788709 | TCONS_00054660-exon-scaffold_243-1575043694:787171..788709 | Clytia hemisphaerica | exon |
| TCONS_00054660-exon-scaffold_243-1510915933:789021..789287 | TCONS_00054660-exon-scaffold_243-1510915933:789021..789287 | Clytia hemisphaerica | exon |
| TCONS_00054660-exon-scaffold_243-1510915933:787171..788709 | TCONS_00054660-exon-scaffold_243-1510915933:787171..788709 | Clytia hemisphaerica | exon |
| TCONS_00054660-exon-scaffold_243-1491911889:789021..789287 | TCONS_00054660-exon-scaffold_243-1491911889:789021..789287 | Clytia hemisphaerica | exon |
| TCONS_00054660-exon-scaffold_243-1491911889:787171..788709 | TCONS_00054660-exon-scaffold_243-1491911889:787171..788709 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:787171..789287 - |
Blast
The following BLAST results are available for this feature:
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