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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054661 ID=TCONS_00054661|Name=TCONS_00054661|organism=Clytia hemisphaerica|type=transcript|length=851bp
aacaatctAGAAATAGATTACGTTTTCGAATGAAATAGTTCTTGTCGTAC
ATGATTTTATTTCATCAAAAGTACTTGTGACGTAATCAAATGTTGACACA
CAGTAAGAAACAATACCAACTGATGATAGTCAAAGCACGAAGAAGCCTTT
AAAAAGGGGATCAGTACCCAATGGAAAGTCAGTCAAGTGAACACCTTCAA
AGAGCAAGGACAGAACAACAGATATCTTCAATGATGCTCAATACAAAAGA
AACGAATAAATTCGATATGGAACTAAGCACACATGAAGAAATTCGTACGA
TCAGTACACAGATTAAAGCACAGTTGGAATACAAGTATcgaaaaacaaca
aagaaattCAAGATACACAAAGGAAAGAAATATCAGACGCTTATAGAAGA
TGATTCAGAAGATACGGATACTTTTTACGAAGCAATGACTGAATATAATT
TACAAGAATCACCTCTATTGATATCAAAAGAAAGTATCATAAAAGCACAA
CTCGCTAAAAAGTATAGTGACCAAGAGAACAAGAGACGCTGTCGAAAGAA
TGGCGTGTTTGAAGTCCCGACTGAAAGAAAACGTAAGCATGGGATTTCAG
AACGGGACGAGTTGGAAAGACTAAGCGTGCATCGTATATTGCaggaatat
ctttttaatgaaAGCGTGAAGGAAATCTTTTTATCGTAAAAATCTTAATA
TTATCACTTTTGTAAATATATTCTttcatatattttattttttgaacttA
TTCTTTTTAACGACATGTACATTTGACTTATGTGTATAACAGGATGTAAA
TATGACTCAACTCTTGTATATAACTTTATCGGGtcaaaagatgtaaaaaa
a Run BLAST on NCBI protein sequence of TCONS_00054661-protein >TCONS_00054661-protein ID=TCONS_00054661-protein|Name=TCONS_00054661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MESQSSEHLQRARTEQQISSMMLNTKETNKFDMELSTHEEIRTISTQIKA
QLEYKYRKTTKKFKIHKGKKYQTLIEDDSEDTDTFYEAMTEYNLQESPLL
ISKESIIKAQLAKKYSDQENKRRCRKNGVFEVPTERKRKHGISERDELER
LSVHRILQEYLFNESVKEIFLS Run BLAST on NCBI transcript from alignment at scaffold_243:877592..879319- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054661 ID=TCONS_00054661|Name=TCONS_00054661|organism=Clytia hemisphaerica|type=transcript|length=1728bp|location=Sequence derived from alignment at scaffold_243:877592..879319- (Clytia hemisphaerica)
AACAATCTAGAAATAGATTACGTTTTCGAATGAAATAGTTCTTGTCGTAC
ATGATTTTATTTCATCAAAAGTACTTGTGACGTAATCAAATGTTGACACA
CAGGTAAGAGAGATTTCGAACTTTTCCATGCGATTTCGAAAGTAGAGTTT
GCATTCTTTACAATTTTTCTTCATCGGGAAAAACATTAGGTTTATTTTAA
ACCGAATATTCTCGAATTTTATTCTTTTAAAAGAGCCTAAAAGCCGGTAT
CTACAGGAAATGATCGACTAAGTTTCCAAACAAAGAATTTATTCATGAGA
ATGAGAACACGGGGGTTTCAAACATGAAAGAAAACGTGCTGAAAGTTTTA
ACAAATGCACAGAAAAGCAAGAGGCAATCATTTTATCACATTTTCTTTAT
GTTTAGAGAAACCAAAAATGCTTCGAAGAAATCAAAACAAAAATCTTCAG
GTTTTTTCTAAAAAAAACTCTACTCTATTTTTTTTTGTAAGAACGTCACT
TCCCAATAGAGGGAAAACGAAAAAGAGTAAAATATATAGCAATGAATGCA
AGTAAATGTAAGTAGAGTGCGAAATTTCTTATGAAAAAGAAAAACTCTTT
TTATTCATTATTAATGAATGCCACTTTCTCTTTGTTTAGTAAGAAACAAT
ACCAACTGATGATAGTCAAAGCACGAAGAAGCCTTTAAAAAGGGGATCAG
TACCCAATGGAAAGTCAGTCAAGTGAACACCTTCAAAGAGCAAGGACAGA
ACAACAGATATCTTCAATGATGCTCAATACAAAAGAAACGAATAAATTCG
ATATGGAACTAAGGTAAGAATAAAAATGATTACTTTGATTATTGTGCCGT
TACAGCAAATTCGAAATTCACAATAACATTGAAGGATAAACCTGCTTAGG
CTTTTCCATTGCTACAAAGAAAGACTTTGTGAATCCTAAGGACACTTTGT
AATGAAAAATAGGATAAGAAAACACATACCTAGTAGGGACGTGAAAACTG
CGTTGGACAATATTTGTGACGAACGATCTGAATCAAAACAAAAACAAAAA
GATTAACAGGGGGCGGCTCAGAGTCGACTAAACCGGTATTATAGGTTTAA
AGGGGGCATATGGTACATGTTGTTTTTCATTCTTTTCTCTGATTTTCGTT
ACAGCACACATGAAGAAATTCGTACGATCAGTACACAGATTAAAGCACAG
TTGGAATACAAGTATCGAAAAACAACAAAGAAATTCAAGATACACAAAGG
AAAGAAATATCAGACGCTTATAGAAGATGATTCAGAAGATACGGATACTT
TTTACGAAGCAATGACTGAATATAATTTACAAGAATCACCTCTATTGATA
TCAAAAGAAAGTATCATAAAAGCACAACTCGCTAAAAAGTATAGTGACCA
AGAGAACAAGAGACGCTGTCGAAAGAATGGCGTGTTTGAAGTCCCGACTG
AAAGAAAACGTAAGCATGGGATTTCAGAACGGGACGAGTTGGAAAGACTA
AGCGTGCATCGTATATTGCAGGAATATCTTTTTAATGAAAGCGTGAAGGA
AATCTTTTTATCGTAAAAATCTTAATATTATCACTTTTGTAAATATATTC
TTTCATATATTTTATTTTTTGAACTTATTCTTTTTAACGACATGTACATT
TGACTTATGTGTATAACAGGATGTAAATATGACTCAACTCTTGTATATAA
CTTTATCGGGTCAAAAGATGTAAAAAAA Coding sequence (CDS) from alignment at scaffold_243:877592..879319- >TCONS_00054661 ID=TCONS_00054661|Name=TCONS_00054661|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_243:877592..879319- (Clytia hemisphaerica)
CACACATGAAGAAATTCGTACGATCAGTACACAGATTAAAGCACAGTTGG
AATACAAGTATCGAAAAACAACAAAGAAATTCAAGATACACAAAGGAAAG
AAATATCAGACGCTTATAGAAGATGATTCAGAAGATACGGATACTTTTTA
CGAAGCAATGACTGAATATAATTTACAAGAATCACCTCTATTGATATCAA
AAGAAAGTATCATAAAAGCACAACTCGCTAAAAAGTATAGTGACCAAGAG
AACAAGAGACGCTGTCGAAAGAATGGCGTGTTTGAAGTCCCGACTGAAAG
AAAACGTAAGCATGGGATTTCAGAACGGGACGAGTTGGAAAGACTAAGCG
TGCATCGTATATTGCAGGAATATCTTTTTAATGAAAGCGTGAAGGAAATC
TTTTTATCGTAAATGGAAAGTCAGTCAAGTGAACACCTTCAAAGAGCAAG
GACAGAACAACAGATATCTTCAATGATGCTCAATACAAAAGAAACGAATA
AATTCGATATGGAACTAAGCACACATGAAGAAATTCGTACGATCAGTACA
CAGATTAAAGCACAGTTGGAATACAAGTATCGAAAAACAACAAAGAAATT
CAAGATACACAAAGGAAAGAAATATCAGACGCTTATAGAAGATGATTCAG
AAGATACGGATACTTTTTACGAAGCAATGACTGAATATAATTTACAAGAA
TCACCTCTATTGATATCAAAAGAAAGTATCATAAAAGCACAACTCGCTAA
AAAGTATAGTGACCAAGAGAACAAGAGACGCTGTCGAAAGAATGGCGTGT
TTGAAGTCCCGACTGAAAGAAAACGTAAGCATGGGATTTCAGAACGGGAC
GAGTTGGAAAGACTAAGCGTGCATCGTATATTGCAGGAATATCTTTTTAA
TGAAAGCGTGAAGGAAATCTTTTTATCGTAAATGGAAAGTCAGTCAAGTG
AACACCTTCAAAGAGCAAGGACAGAACAACAGATATCTTCAATGATGCTC
AATACAAAAGAAACGAATAAATTCGATATGGAACTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054661-exon-scaffold_243-1575043694:879217..879319 | TCONS_00054661-exon-scaffold_243-1575043694:879217..879319 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1575043694:878507..878680 | TCONS_00054661-exon-scaffold_243-1575043694:878507..878680 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1575043694:877592..878165 | TCONS_00054661-exon-scaffold_243-1575043694:877592..878165 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1510915933:879217..879319 | TCONS_00054661-exon-scaffold_243-1510915933:879217..879319 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1510915933:878507..878680 | TCONS_00054661-exon-scaffold_243-1510915933:878507..878680 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1510915933:877592..878165 | TCONS_00054661-exon-scaffold_243-1510915933:877592..878165 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1491911889:879217..879319 | TCONS_00054661-exon-scaffold_243-1491911889:879217..879319 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1491911889:878507..878680 | TCONS_00054661-exon-scaffold_243-1491911889:878507..878680 | Clytia hemisphaerica | exon |
| TCONS_00054661-exon-scaffold_243-1491911889:877592..878165 | TCONS_00054661-exon-scaffold_243-1491911889:877592..878165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:877592..879319 - |
Blast
The following BLAST results are available for this feature:
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