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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054664 ID=TCONS_00054664|Name=TCONS_00054664|organism=Clytia hemisphaerica|type=transcript|length=1372bp
CTAGTCTGACATCATGCCTTATCATCTATGACAAAATGCGTACAAAGTCG
CGACGGAGAGAGAATACTTTTATCTAAATAAGGGAAATGAGAAGTCGCTC
TTCCTCACTCATCATAGTTTGATAGTGCTGATGATAATGAGAAAGCGAAT
GACGTCATTGTGAAACCAACGAGATCTGAATGAATATACAATATTCAAAG
AATAGAGTCGTGACTTTTTGTATCGCTTTCATTTAGATATTCGTAATAAA
AGTGAGAGCACAAAAAGTGAAGCAAAGTTAACCAGAAAGAGACGAACAGA
AGAAGACAACGAACCATGCAGAGGATTGCAAAGAatttgaaagaagagaa
aagctCAATCTTTATGATCACTCGTGACTGCAGTGATTCCGAGGATACAG
ATAAAGAGGTTGAGCAGTTACAAGAGAAAAAAGGGAACTCGAAGAACGAA
CTGACGAGTAACGATGGAATCGAAACGAGGCCGATATCACCGACTGTTCT
TTTGGTCttacaaaacaaaatcaaatgcCAGCATTGTGAAGGTggattga
aaattaaaaaacatgttaaaAGGACTTGGTCACTTGTTTGTGAGAACTTT
GAATGTCCCTTCCCAAGGAGCCAGTTGGAATCAGTCGAACATCAAATTGA
TATTTCCGAAGAAGCCGTTATCAAGAATCGGGAACATATATTGAAAACAT
GTTACGAATGAGGTGGTTTAGTGTTATTCATTATAAGGAAGCTTTTGTGT
GAAGATAAGGAAATACGAAGAAATACAATGATCCTTTCTCAATAACAAAG
AAGATGTACAAGTCAAACTTTTGAGATAAGAGGAAAAAATCATTGCAAAA
AATAAGCACTCACCTTCATCGATCTTGGTTTGGTTGACAGCTGACATGAA
CTTGAGCAAGGCCTCGCGAACTCCACAGTCACTTTCTTGCTAAAATGAAA
TGAAGATATGGAAAGTGAGACCAGGGATCGGATgttcaaaaattcactaa
aaCTTCGGAGTGTATTActatgggggggggggctactaTACTTTCATTGT
CTAGTTATTTAGGCGTATTATTCATTTTAATGTAGATATGGGTCACTGTA
GATAGATTTTTGCCAAACAGAAATATTTTTAAGCTAATTTTAGTAAGATG
CTATTTGCCCTTTTGTTGATCGAAAGGCATTTCTAGATGAAGTAATTAAT
TTAATGTGTAATGTATATAATTTAAACAGCTTCCATATGAAAAGCGGAAC
TTCATTTGTAGCGGAAATTTTCTGAATTATGGCGAACTCGCCAAAAGTAG
TAAAAAtaccttcaaaattcaatataGAAAACCCTGTAATTTCTGGCCAA
CCTTGCTATTCTTTCACTTAGG Run BLAST on NCBI protein sequence of TCONS_00054664-protein >TCONS_00054664-protein ID=TCONS_00054664-protein|Name=TCONS_00054664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MQRIAKNLKEEKSSIFMITRDCSDSEDTDKEVEQLQEKKGNSKNELTSND
GIETRPISPTVLLVLQNKIKCQHCEGGLKIKKHVKRTWSLVCENFECPFP
RSQLESVEHQIDISEEAVIKNREHILKTCYE Run BLAST on NCBI transcript from alignment at scaffold_243:905498..907111- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054664 ID=TCONS_00054664|Name=TCONS_00054664|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at scaffold_243:905498..907111- (Clytia hemisphaerica)
CTAGTCTGACATCATGCCTTATCATCTATGACAAAATGCGTACAAAGTCG
CGACGGAGAGAGAATACTTTTATCTAAATAAGGGAAATGAGAAGTCGCTC
TTCCTCACTCATCATAGTTTGATAGTGCTGATGATAATGAGAAAGCGAAT
GACGTCATTGTGAAACCAACGAGATCTGAATGAATATACAATATTCAAAG
AATAGAGTCGTGACTTTTTGTATCGCTTTCATTTAGATATTCGTAATAAA
AGTGAGAGCACAAAAAGTGAAGCAAAGTTAACCAGAAAGAGACGAACAGA
AGAAGACAACGAACCATGCAGAGGATTGCAAAGAATTTGAAAGAAGAGAA
AAGCTCAATCTTTATGATCACTCGTGGTAAGTACATAGCAAGTTTCGCGT
ATAATCAACGGTTAAAACGGTTCCTCAAATAATGTATGAATCCACTACTA
AGTTAATTTCAGACTTTAAGTCTGACATATTTATACTCTCTACCATATTA
CAATAAGAGTTGACTAAATTCTTAATTCATACATCTTATTTCTTGGCGCA
TCCACGTCAATCTTCGATTCGACATCTTGTATTTTAATAATTCGTTCATT
TTGTTTTCCATATGACAGACTGCAGTGATTCCGAGGATACAGATAAAGAG
GTTGAGCAGTTACAAGAGAAAAAAGGGAACTCGAAGAACGAACTGACGAG
TAACGATGGAATCGAAACGAGGCCGATATCACCGACTGTTCTTTTGGTCT
TACAAAACAAAATCAAATGCCAGCATTGTGAAGGTGGATTGAAAATTAAA
AAACATGTTAAAAGGACTTGGTCACTTGTTTGTGAGAACTTTGAATGTCC
CTTCCCAAGGAGCCAGTTGGAATCAGTCGAACATCAAATTGATATTTCCG
AAGAAGCCGTTATCAAGAATCGGGAACATATATTGAAAACATGTTACGAA
TGAGGTGGTTTAGTGTTATTCATTATAAGGAAGCTTTTGTGTGAAGATAA
GGAAATACGAAGAAATACAATGATCCTTTCTCAATAACAAAGAAGATGTA
CAAGTCAAACTTTTGAGATAAGAGGAAAAAATCATTGCAAAAAATAAGCA
CTCACCTTCATCGATCTTGGTTTGGTTGACAGCTGACATGAACTTGAGCA
AGGCCTCGCGAACTCCACAGTCACTTTCTTGCTAAAATGAAATGAAGATA
TGGAAAGTGAGACCAGGGATCGGATGTTCAAAAATTCACTAAAACTTCGG
AGTGTATTACTATGGGGGGGGGGGCTACTATACTTTCATTGTCTAGTTAT
TTAGGCGTATTATTCATTTTAATGTAGATATGGGTCACTGTAGATAGATT
TTTGCCAAACAGAAATATTTTTAAGCTAATTTTAGTAAGATGCTATTTGC
CCTTTTGTTGATCGAAAGGCATTTCTAGATGAAGTAATTAATTTAATGTG
TAATGTATATAATTTAAACAGCTTCCATATGAAAAGCGGAACTTCATTTG
TAGCGGAAATTTTCTGAATTATGGCGAACTCGCCAAAAGTAGTAAAAATA
CCTTCAAAATTCAATATAGAAAACCCTGTAATTTCTGGCCAACCTTGCTA
TTCTTTCACTTAGG Coding sequence (CDS) from alignment at scaffold_243:905498..907111- >TCONS_00054664 ID=TCONS_00054664|Name=TCONS_00054664|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_243:905498..907111- (Clytia hemisphaerica)
ACTGCAGTGATTCCGAGGATACAGATAAAGAGGTTGAGCAGTTACAAGAG
AAAAAAGGGAACTCGAAGAACGAACTGACGAGTAACGATGGAATCGAAAC
GAGGCCGATATCACCGACTGTTCTTTTGGTCTTACAAAACAAAATCAAAT
GCCAGCATTGTGAAGGTGGATTGAAAATTAAAAAACATGTTAAAAGGACT
TGGTCACTTGTTTGTGAGAACTTTGAATGTCCCTTCCCAAGGAGCCAGTT
GGAATCAGTCGAACATCAAATTGATATTTCCGAAGAAGCCGTTATCAAGA
ATCGGGAACATATATTGAAAACATGTTACGAATGAATGCAGAGGATTGCA
AAGAATTTGAAAGAAGAGAAAAGCTCAATCTTTATGATCACTCGTGACTG
CAGTGATTCCGAGGATACAGATAAAGAGGTTGAGCAGTTACAAGAGAAAA
AAGGGAACTCGAAGAACGAACTGACGAGTAACGATGGAATCGAAACGAGG
CCGATATCACCGACTGTTCTTTTGGTCTTACAAAACAAAATCAAATGCCA
GCATTGTGAAGGTGGATTGAAAATTAAAAAACATGTTAAAAGGACTTGGT
CACTTGTTTGTGAGAACTTTGAATGTCCCTTCCCAAGGAGCCAGTTGGAA
TCAGTCGAACATCAAATTGATATTTCCGAAGAAGCCGTTATCAAGAATCG
GGAACATATATTGAAAACATGTTACGAATGAATGCAGAGGATTGCAAAGA
ATTTGAAAGAAGAGAAAAGCTCAATCTTTATGATCACTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054664-exon-scaffold_243-1575043694:906736..907111 | TCONS_00054664-exon-scaffold_243-1575043694:906736..907111 | Clytia hemisphaerica | exon |
| TCONS_00054664-exon-scaffold_243-1575043694:905498..906493 | TCONS_00054664-exon-scaffold_243-1575043694:905498..906493 | Clytia hemisphaerica | exon |
| TCONS_00054664-exon-scaffold_243-1510915933:906736..907111 | TCONS_00054664-exon-scaffold_243-1510915933:906736..907111 | Clytia hemisphaerica | exon |
| TCONS_00054664-exon-scaffold_243-1510915933:905498..906493 | TCONS_00054664-exon-scaffold_243-1510915933:905498..906493 | Clytia hemisphaerica | exon |
| TCONS_00054664-exon-scaffold_243-1491911889:906736..907111 | TCONS_00054664-exon-scaffold_243-1491911889:906736..907111 | Clytia hemisphaerica | exon |
| TCONS_00054664-exon-scaffold_243-1491911889:905498..906493 | TCONS_00054664-exon-scaffold_243-1491911889:905498..906493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:905498..907111 - |
Blast
The following BLAST results are available for this feature:
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