TCONS_00054674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054674
Unique NameTCONS_00054674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054674 ID=TCONS_00054674|Name=TCONS_00054674|organism=Clytia hemisphaerica|type=transcript|length=414bp
AACAAAGATTATTACAAAAACTCTGTATTACTGGTTCACCCTGAAAAAAG
CTGTGTTTGCGTTTTCGTTGTAATTGATGATACATCGAAACTGAAAGAAA
GTCTTAAAGCTCTcaataacattttaaaaacaatctaTTTCGCaagtttt
gaattgttttgctCAGAATATCTGAGTATTACAGGAACACTTGTTTTCCC
TGATAAAGATATGAAAGATCTAGAACATTTGATGCACTTGGACATTCCGA
AAGAAAGTGAAACATTGTTTATCACCAAACAAGAATTCCAGGAATATAAC
TTCGAACAATGGATTGATGATCTTTTCAAAACCATAAGATCTGACTTCAA
TACAATCCGTTCGAAAGACTTTCGATCAAATATTGATTTATTTCACACGT
TGTGTGGCACCTTA
Run BLAST on NCBI

protein sequence of TCONS_00054674-protein

>TCONS_00054674-protein ID=TCONS_00054674-protein|Name=TCONS_00054674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
NKDYYKNSVLLVHPEKSCVCVFVVIDDTSKLKESLKALNNILKTIYFASF
ELFCSEYLSITGTLVFPDKDMKDLEHLMHLDIPKESETLFITKQEFQEYN
FEQWIDDLFKTIRSDFNTIRSKDFRSNIDLFHTLCGTL
Run BLAST on NCBI

transcript from alignment at scaffold_243:134857..135270

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054674 ID=TCONS_00054674|Name=TCONS_00054674|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_243:134857..135270 (Clytia hemisphaerica)
TAAGGTGCCACACAACGTGTGAAATAAATCAATATTTGATCGAAAGTCTT
TCGAACGGATTGTATTGAAGTCAGATCTTATGGTTTTGAAAAGATCATCA
ATCCATTGTTCGAAGTTATATTCCTGGAATTCTTGTTTGGTGATAAACAA
TGTTTCACTTTCTTTCGGAATGTCCAAGTGCATCAAATGTTCTAGATCTT
TCATATCTTTATCAGGGAAAACAAGTGTTCCTGTAATACTCAGATATTCT
GagcaaaacaattcaaaacttGCGAAAtagattgtttttaaaatgttatt
gAGAGCTTTAAGACTTTCTTTCAGTTTCGATGTATCATCAATTACAACGA
AAACGCAAACACAGCTTTTTTCAGGGTGAACCAGTAATACAGAGTTTTTG
TAATAATCTTTGTT

Coding sequence (CDS) from alignment at scaffold_243:134857..135270

>TCONS_00054674 ID=TCONS_00054674|Name=TCONS_00054674|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_243:134857..135270 (Clytia hemisphaerica)
TAAGGTGCCACACAACGTGTGAAATAAATCAATATTTGATCGAAAGTCTT
TCGAACGGATTGTATTGAAGTCAGATCTTATGGTTTTGAAAAGATCATCA
ATCCATTGTTCGAAGTTATATTCCTGGAATTCTTGTTTGGTGATAAACAA
TGTTTCACTTTCTTTCGGAATGTCCAAGTGCATCAAATGTTCTAGATCTT
TCATATCTTTATCAGGGAAAACAAGTGTTCCTGTAATACTCAGATATTCT
GagcaaaacaattcaaaacttGCGAAAtagattgtttttaaaatgttatt
gAGAGCTTTAAGACTTTCTTTCAGTTTCGATGTATCATCAATTACAACGA
AAACGCAAACACAGCTTTTTTCAGGGTGAACCAGTAATACAGAGTTTTTG
TAATAATCTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034435XLOC_034435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054674-exon-scaffold_243-1491911889:134857..135270TCONS_00054674-exon-scaffold_243-1491911889:134857..135270Clytia hemisphaericaexon
TCONS_00054674-exon-scaffold_243-1510915933:134857..135270TCONS_00054674-exon-scaffold_243-1510915933:134857..135270Clytia hemisphaericaexon
TCONS_00054674-exon-scaffold_243-1575043694:134857..135270TCONS_00054674-exon-scaffold_243-1575043694:134857..135270Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054674-proteinTCONS_00054674-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:134857..135270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316035	0.427713	0.19595	0.575119	2.29686	1.47539	2.00249	2.83192	0.291672	0.541925	2.29495	0.716655	2.44675	2.29206	2.41638	5.83421	1.42909	3.11223	3.93349	5.4315	7.5373	7.13573	2.31611	2.81004	2.42241	3.75331	16.7269	23.8248	12.2735	12.7079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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