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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054710 ID=TCONS_00054710|Name=TCONS_00054710|organism=Clytia hemisphaerica|type=transcript|length=5100bpRun BLAST on NCBI transcript from alignment at scaffold_244:62951..79334+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054710 ID=TCONS_00054710|Name=TCONS_00054710|organism=Clytia hemisphaerica|type=transcript|length=16384bp|location=Sequence derived from alignment at scaffold_244:62951..79334+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054710 vs. Swiss-Prot (Human)
Match: DDX28 (Probable ATP-dependent RNA helicase DDX28 OS=Homo sapiens GN=DDX28 PE=1 SV=2) HSP 1 Score: 216.468 bits (550), Expect = 3.753e-59 Identity = 143/422 (33.89%), Postives = 220/422 (52.13%), Query Frame = 2
Query: 242 TFDTLNLRSDVIQGL--GSLEVVNPTIIQMLSIPMINDRKNIFCAAQTGSGKTLVYAAPIISRLKNNSDDGFINRLCRPRALVVAPSRELASQILKIFKSISHHAPIRSLGLI-----GQHQKKWTRDYL--KGIVDVVVGTPNTILKYHQRGRLLLSDLQYLVIDEADTMMDENFRKVTTEILQSCQFTESNLNSRND----TQAILTAATLPPKGI---LSKYQRYIKDLEICQSNLHKVLPNIKHSFNKTTEDQKIPLVIKRLENLLKR--------PSRKFVIFCNNSKTCNFVSIKLQEAKIEHSKLHGNMNPQVRSKDYDKFVKNETRVLVCTDVASRGLDSSEITVVINYDCPFNTTDYLHRSGRTGRATEQFPGEGEIVTFITQNKQVIFAHKIQEAAMKNKSLDDDIRSKKTP 1435
+F L L V+ L + EVV PT +Q +IP + +++ CAA+TGSGKTL Y P++ RL + + PR LV+ PSRELA Q+ + + + RSLGL+ G H + R L + DV+V TP + K + + L L +LV+DEADT++DE+F ++ IL+ E + + Q +L AT P +G+ L+K I S LH ++P++K +F + K+ L ++LK PS ++FCN+S T N++ L + KI+H +L G M +R + F K+ +L+CTD+ASRGLDS+ + +V+NYD P DY+HR+GR GR + P G +++F+T V KI+ AA + +SL S K P
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLP-IPAPRGLVLVPSRELAQQVRAVAQPLG-----RSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNPKAQLVLVGATFP-EGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKGADKV----AELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVP--GTVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVKEP 535 The following BLAST results are available for this feature:
BLAST of TCONS_00054710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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