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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054713 ID=TCONS_00054713|Name=TCONS_00054713|organism=Clytia hemisphaerica|type=transcript|length=834bp
gtatttttcaggctCTATAGTTGGCTTTTATCCCAATCCCAATTGGatga
gatttaaaaaattatcaaaaatcctCATTCATCCTCAGGGAGGGATCTCC
CTACCCCAAAGATGCACAAAtggttgaaaaataaaaatgaaacttttagt
TTACACCCAAATTCAATTTGGAATGGGTTTCAAAAAATTGGTATTAAACA
TCTTCCCCTATTTTCTTGCTTCAAACATTATAAAAGGAACAGCACAAAGG
aaaaagatatttaatgGGGTCTTTCAACCCATCCCAGATTTGAGACTTGC
ATTACGCTGAGTTATTTAAATTAGTTGATTTTAACATTTCAGATTATTTA
GTCATGCCTTTGCCATTAATCAAGCTAGGCTCACTCTTCATAAAAACTTT
GTCAAAACCACTGGCTAATGCAATCAAAAGAAATGTGAAAGAACACCCAA
GTTTGTCCAGCACAATTGCCATTCCAGCTCAAGGTTATCATCAACTGGAA
CAAACTGTTCGGATGAAACTAATGGGTTGGAATAAGAAAATTGATGTAAA
ACCTTTGTCACAAGATGCTGCCATCAACTTAGGTGCAGAACTACTAGGAG
AACTTGTAATCTTTTCAATAGCACttggatcattattttttgaatataaA
AGAGGACATAAAAAAGACAAAGCAAAAGAAGCAATTCAAAACCAAAGATT
ATTCAATTTACAAGAACAAATTGATATATTAGGACTACAAGTTAAAACAC
AAGCATCTAAGCAAATAATGTTGCAGAATGAAATCGACACATTACGTGGT
ACATTGGACCAAAAGCAACATGGTTGAAAAACAA Run BLAST on NCBI transcript from alignment at scaffold_244:91698..94318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054713 ID=TCONS_00054713|Name=TCONS_00054713|organism=Clytia hemisphaerica|type=transcript|length=2621bp|location=Sequence derived from alignment at scaffold_244:91698..94318+ (Clytia hemisphaerica)
gtatttttcaggctCTATAGTTGGCTTTTATCCCAATCCCAATTGGatga
gatttaaaaaattatcaaaaatcctCATTCATCCTCAGGGAGGGATCTCC
CTACCCCAAAGATGCACAAAtggttgaaaaataaaaatgaaacttttagt
TTACACCCAAATTCAATTTGGAATGGGTTTCAAAAAATTGGTATTAAACA
TCTTCCCCTATTTTCTTGCTTCAAACATTATAAAAGGAACAGCACAAAGG
aaaaagatatttaatgGGGTCTTTCAACCCATCCCAGATTTGAGACTTGC
ATTACGCTGAGTTATTTAAATTAGTTGATTTTAACATTTCAGATTATTTA
GTCATGCCTTTGCCATTAATCAAGCTAGGCTCACTCTTCATAAAAACTTT
GTCAAAACCACTGGCTAATGCAATCAAAAGAAATGTGAAAGAACACCCAA
GTTTGTCCAGCACAATTGCCATTCCAGCTCAAGGTATAATGACTTCTatg
tgtttgaaaaaaatttagttttaaaatttttctttgtagtAAAGAAACAA
TCTAGAGAACTATTTCAAATACAGTATAACCTAAGCATAAGTATAATTTC
AGTTCAATATTTCTTTACCatggcccggttgttcaaaagtggattagcgG
CTGACTAGCTTAATTTTCTATTAAATCTCGATTAGCGCCGATTAGCACAG
AACCGTTGGgtgttcaaaaacaaaattagaCTTTTAAATCTGGATTAAAT
CCCAATTAAATCGGCCAAATTTTAATCCTGCTCTGACACAGGATTAACAA
AGCTTTTTCCTACAAAAAAGTGAAGTCGCTGCATTGcgagaaattcgaac
gaaaaaagatttcgaaatgttttgaaaacatttcaaaaagtgacgtcaag
attaagatttttgaaaacacaggCAAAAGTGCACGATTAGTTAATCTAAC
GTTCAAACAACGGTAGTTAATCACTAGGATTAGCTAATCGAAATTTAATC
ACGATTAGCTCTAATNAACAATCTAGAGAACTATTTCAATATTTCTTTAC
CATGGCCcagttgttcaaaagtggattagcgGCTGACTAGCTTAATTTTC
TATTAAATCTCGATTAGCGCCGCTTAGCACAGAACCGTTGGttgttcaaa
aaaaaattaggctttTAAATCTGGATTAAATCCCAATTAAATCGGCCAAA
TTTTAATCCTGCTCTGACATAGGATTAACAAAGCTTTTTCCTACAAAAAA
GTGAAGTCGCTGCATTGCGAgaaattcgaacaaaaaaagatttcgaaatg
ttttgaaaacatttcaaaaaatgacgtcaagattaagatttttgaaaaca
caggCAAAAGTCCACGATTAGTTAATCTAACCTTCAAACAACGGTAGTTA
ATCACTAGGATTAGCTAATCGAAATTTATTCACGATTAGCTCTAATGGGG
ATTTAATCTAATCAAGTTTTGAACAACCGGGTCCATGACACTTTTGATGA
TCTTGCTGAATTGAAGTTCTTTGAAGGAAATCCTTTCAACATTTGCAGGT
CTTTTAAGGaatccaattttgaaattcttattcAATCGTAAAAAAAGATC
AGAGATTGAAATTTCATTCTATCTGCTCTAAAAcccttttttataaatat
aaatcaGATAAAAGAGCAAAAAACCTTCAagggacttcaaattttcactg
aaaaCCAAAGCGCTTAACCAATGGCAGAATGTTGAGTGTAGGAAGTTTGA
CCCTGAAAAGATGAATTTgtacattttcaaaaagaccAAAACTTGATTTC
TTTTAATAGCATGTGTGAAAAAGAAAAGCTAACAACTGATTTTAGTAATT
CTAAAATTGGATCAAAGGTAAACTAAATCATTTACAAGACGTTAAAGTCA
AGTTGACTATttgaatacaccgtttaggagtttCGCTATCTCCACCGTGT
TCCACCGTagaaacggtaggtaaaaatgtgcactttagtactgtggaagg
ttagagtaatgtaaacattatcaattttttcttttctttaaagatatgat
ttagatatttgaacatgatatcaatgataattttatggatctcccctgaa
aatttcacaaaaattcatccaGATGAAAAGAATTCCTTACGAGAACCGTA
ATTTTACCTATCGTTTTTTACGGTGAGAGTGAAGTTTTCTATGGTTACGC
GTGCGCAGTCAACAATTCTAAACAGTGTATTCAGCTaccaaatcaatatt
ttttctatGTTCTTTCTAAGGTTATCATCAACTGGAACAAACTGTTCGGA
TGAAACTAATGGGTTGGAATAAGAAAATTGATGTAAAACCTTTGTCACAA
GATGCTGCCATCAACTTAGGTGCAGAACTACTAGGAGAACTTGTAATCTT
TTCAATAGCACttggatcattattttttgaatataaAAGAGGACATAAAA
AAGACAAAGCAAAAGAAGCAATTCAAAACCAAAGATTATTCAATTTACAA
GAACAAATTGATATATTAGGACTACAAGTTAAAACACAAGCATCTAAGCA
AATAATGTTGCAGAATGAAATCGACACATTACGTGGTACATTGGACCAAA
AGCAACATGGTTGAAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054713-exon-scaffold_244-1491911889:91698..92180 | TCONS_00054713-exon-scaffold_244-1491911889:91698..92180 | Clytia hemisphaerica | exon |
| TCONS_00054713-exon-scaffold_244-1510915933:91698..92180 | TCONS_00054713-exon-scaffold_244-1510915933:91698..92180 | Clytia hemisphaerica | exon |
| TCONS_00054713-exon-scaffold_244-1575043694:91698..92180 | TCONS_00054713-exon-scaffold_244-1575043694:91698..92180 | Clytia hemisphaerica | exon |
| TCONS_00054713-exon-scaffold_244-1491911889:93968..94318 | TCONS_00054713-exon-scaffold_244-1491911889:93968..94318 | Clytia hemisphaerica | exon |
| TCONS_00054713-exon-scaffold_244-1510915933:93968..94318 | TCONS_00054713-exon-scaffold_244-1510915933:93968..94318 | Clytia hemisphaerica | exon |
| TCONS_00054713-exon-scaffold_244-1575043694:93968..94318 | TCONS_00054713-exon-scaffold_244-1575043694:93968..94318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:91698..94318 + |
Blast
The following BLAST results are available for this feature:
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