Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054730 ID=TCONS_00054730|Name=TCONS_00054730|organism=Clytia hemisphaerica|type=transcript|length=2331bp GACCAGCAGCATTCATGAAGAAGTCGAACAGCACCTCATCAACAAATCAG TTCACGTCGACATCGAAAATAAAATCACGACTGCTACTCTACCATTCACG AAAGACCCAACAATTTGTCTTGAACCAAATCGAAACAAGGCGATGAAAGT TTACCTTCAACAAGTCAACCGAATCAACAAGTACGAACAAGACAAACAAG ATGTTATCAAGTCTGAACGCAAACTCCAAGACCTCGGTCACGTTGACTTT GTTCGCAATCTCCCAATCAAATCACAGCAAGCACTTCAAGCCAACGTCAC AAAGAACTACATCCCCTTGAGGGCGGTGTGGAAACCGAATTCGTTATCAA CTCCGTGTCGTATAGTCTTCGACGCCTCGCAGCCAACTGGAAGTGGTCAC TCACTCAATTCAATCCTCGCCAAAGGCTCCAACGGCATGAATAGACTCGT TGACATCTTCATTCGTTGGTTCACTCAAAGAATCGCCTTACACACAGACA TTGCTAAGATGTACAACTCGATTAAGCTTGCCGAATCCGACTGGTGTTAC CAACGCTATCTCTGGAACGATTCCCTCAACGTTGGATCATCTCCCGAaga aaagattataaaaacaCTAATCTACGGTGTTAAATCGTCAGGGAATCAAT CGGAACGTGGACTCCGCCAAACCGCCCACCTTATGAAAGAGCAATATCCA GACGTATCCAAGATAATCGAAAGATATGTGTATGTCACCGGTGCGTCACC GGTGAGGAATCCATCGACCTTGCCATGCAAAGAGCTGATGAAATGGAGAT TGTCTGCTCAAAGGGAGGATTTGGACTCAAAGGATTCACCTTTTCAGGAA AAGATCCAATCGACAAGCTTTCTGCTGACGGTAAAAGTATCCACGTTGGA GGTATTCAATGGCTCTCCAAAGACGACGTTATTTCAATCGATTTCGCTGA GCTCAACTTTGCGAAGAAGGTCCGAGGAAAGAAGCCAACTACTCAAAAGG AAATCCCAGCTAAACTCACTCGTCGACACTGTGTATCAAAAGCAGCGGAA ATCTTCGAcatcactgggaaattgacccCATTTACTGCGGCATTGAAGCT CGACCTCCATGACTTAGTTGAACGTAAGCTAGGTTGGGATGATATCATTC CAGATTCATTTCGTCCAATATGGCAATCACACTTCGAGATGATGGAGGAA ATCAAAAATGTTCAACATTCAACCGATGCATCATTCCTGAGGACGCCGTC GACATCAAAATTTCCACCCTCAATTTTGGAGATGCCAGCAAATCGATCGC AGCTTCAGCCATCTATGGAAGAGTTCTTCGTAAAAACGGGCTCTACTCAT GTCAACTGATCTTTGCTCGctcgaaaatcatccaaaatccTTCATCACAG CCAAGAGGAGAGCTTTCGGCAGCCGTCCTGAACACTCACACTGGAGAAGT TGTCAAGCAAGCTCTGCAATCAAAACATGATGGTTGGACAAATCTCACAG ACAGCCAAATCGTCCTTCACTGGATTCACAACGATGAAATCAAACTGAAA CCATTCGTCCACAATCGAGTGATTGAAGTCCAACGATTTACAAACCCAAA CGATTGGTTCTACATCAAGACAGATCAAATGCTAGCCGACATCGCAACAA GAAGAGGAGCTTCACTGCAAGATGTTGACAGCCAATCAAGATGGATCAAT GGAGACAAGTGGATGACTCAAAAGGATCTTCCCATTAAATCGGTAAGAGA TATTATTCTTAACCTTACTGAAATCAACGAAATCAAGAAAGAGACTTCAA CTGTGGTATCAACAAGTTGCAATTTTGCATCAAGGCAAGGAACTGGTCTT CCAGACGAAGTGAAGAAGAGATATCTGTTCTCCTCTTATCTATTGGATCC GAACAAGTTTCCATTCAAGAAAGTGGTTAGGATTCTAGCAATTGTTTATA AATATTACTATGCACTCAAGTCTTTAGCAAAGGTTAAAGGTCCAAAGAAG TTCCCCGACATTTCAATGGTCGACAAATCAATGATCATCCTATCGAGTGA CGAGATCAAACGTGCTGAACACTACTACTGGTGGAAAGGTTCAGCAGAAG TTCGTCATTTCATCAAAGCTGAGAAGTACAAACGTTTCATCAAAGATATC AACGGCATACTCACCTACACTGGACGAATACTCGACAGTGACGAAGCTCA AATCACCACACCAATGACGAAAGCTATGACAGATCTCCAATCAACAACCT TCTGTGTGCCTATCCTCGACAAGTACTCACCTATCTCCTACGCAATCGTC AACGAAGTTCATTGGGATAACAACGTGGTCA Run BLAST on NCBI protein sequence of TCONS_00054730-protein >TCONS_00054730-protein ID=TCONS_00054730-protein|Name=TCONS_00054730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MAITLRDDGGNQKCSTFNRCIIPEDAVDIKISTLNFGDASKSIAASAIYG RVLRKNGLYSCQLIFARSKIIQNPSSQPRGELSAAVLNTHTGEVVKQALQ SKHDGWTNLTDSQIVLHWIHNDEIKLKPFVHNRVIEVQRFTNPNDWFYIK TDQMLADIATRRGASLQDVDSQSRWINGDKWMTQKDLPIKSVRDIILNLT EINEIKKETSTVVSTSCNFASRQGTGLPDEVKKRYLFSSYLLDPNKFPFK KVVRILAIVYKYYYALKSLAKVKGPKKFPDISMVDKSMIILSSDEIKRAE HYYWWKGSAEVRHFIKAEKYKRFIKDINGILTYTGRILDSDEAQITTPMT KAMTDLQSTTFCVPILDKYSPISYAIVNEVHWDNNVV Run BLAST on NCBI transcript from alignment at scaffold_244:176693..179112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054730 ID=TCONS_00054730|Name=TCONS_00054730|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at scaffold_244:176693..179112- (Clytia hemisphaerica) GACCAGCAGCATTCATGAAGAAGTCGAACAGCACCTCATCAACAAATCAG
TTCACGTCGACATCGAAAATAAAATCACGACTGCTACTCTACCATTCACG
AAAGACCCAACAATTTGTCTTGAACCAAATCGAAACAAGGCGATGAAAGT
TTACCTTCAACAAGTCAACCGAATCAACAAGTACGAACAAGACAAACAAG
ATGTTATCAAGTCTGAACGCAAACTCCAAGACCTCGGTCACGTTGACTTT
GTTCGCAATCTCCCAATCAAATCACAGCAAGCACTTCAAGCCAACGTCAC
AAAGAACTACATCCCCTTGAGGGCGGTGTGGAAACCGAATTCGTTATCAA
CTCCGTGTCGTATAGTCTTCGACGCCTCGCAGCCAACTGGAAGTGGTCAC
TCACTCAATTCAATCCTCGCCAAAGGCTCCAACGGCATGAATAGACTCGT
TGACATCTTCATTCGTTGGTTCACTCAAAGAATCGCCTTACACACAGACA
TTACTAAGATGTACAACTCGATTAAGCTTGCCGAATCCGACTGGTGTTAC
CAACGTTATCNCCTCAAAGAATCGACTTCCACACAGACATTGCTAAGATG
TACAACTCGATTAAGCTTGCCGAATCCGACTGGTGTTACCAACGCTATCT
CTGGAACGATTCCCTCAACGTTGGATCATCTCCCGAAGAAAAGATTATAA
AAACACTAATCTACGGTGTTAAATCGTCAGGGAATCAATCGGAACGTGGA
CTCCGCCAAACCGCCCACCTTATGAAAGAGCAATATCCAGACGTATCCAA
GATAATCGAAAGATATGTGTATGTCACCGGTGCGTCACCGGTGAGGAATC
CATCGACCTTGCCATGCAAAGAGCTGATGAAATGGAGATTGTCTGCTCAA
AGGGAGGATTTGGACTCAAAGGATTCACCTTTTCAGGAAAAGATCCAATC
GACAAGCTTTCTGCTGACGGTAAAAGTATCCACGTTGGAGGTATTCAATG
GCTCTCCAAAGACGACGTTATTTCAATCGATTTCGCTGAGCTCAACTTTG
CGAAGAAGGTCCGAGGAAAGAAGCCAACTACTCAAAAGGAAATCCCAGCT
AAACTCACTCGTCGACACTGTGTATCAAAAGCAGCGGAAATCTTCGACAT
CACTGGGAAATTGACCCCATTTACTGCGGCATTGAAGCTCGACCTCCATG
ACTTAGTTGAACGTAAGCTAGGTTGGGATGATATCATTCCAGATTCATTT
CGTCCAATATGGCAATCACACTTCGAGATGATGGAGGAAATCAAAAATGT
TCAACATTCAACCGATGCATCATTCCTGAGGACGCCGTCGACATCAAAAT
TTCCACCCTCAATTTTGGAGATGCCAGCAAATCGATCGCAGCTTCAGCCA
TCTATGGAAGAGTTCTTCGTAAAAACGGGCTCTACTCATGTCAACTGATC
TTTGCTCGCTCGAAAATCATCCAAAATCCTTCATCACAGCCAAGAGGAGA
GCTTTCGGCAGCCGTCCTGAACACTCACACTGGAGAAGTTGTCAAGCAAG
CTCTGCAATCAAAACATGATGGTTGGACAAATCTCACAGACAGCCAAATC
GTCCTTCACTGGATTCACAACGATGAAATCAAACTGAAACCATTCGTCCA
CAATCGAGTGATTGAAGTCCAACGATTTACAAACCCAAACGATTGGTTCT
ACATCAAGACAGATCAAATGCTAGCCGACATCGCAACAAGAAGAGGAGCT
TCACTGCAAGATGTTGACAGCCAATCAAGATGGATCAATGGAGACAAGTG
GATGACTCAAAAGGATCTTCCCATTAAATCGGTAAGAGATATTATTCTTA
ACCTTACTGAAATCAACGAAATCAAGAAAGAGACTTCAACTGTGGTATCA
ACAAGTTGCAATTTTGCATCAAGGCAAGGAACTGGTCTTCCAGACGAAGT
GAAGAAGAGATATCTGTTCTCCTCTTATCTATTGGATCCGAACAAGTTTC
CATTCAAGAAAGTGGTTAGGATTCTAGCAATTGTTTATAAATATTACTAT
GCACTCAAGTCTTTAGCAAAGGTTAAAGGTCCAAAGAAGTTCCCCGACAT
TTCAATGGTCGACAAATCAATGATCATCCTATCGAGTGACGAGATCAAAC
GTGCTGAACACTACTACTGGTGGAAAGGTTCAGCAGAAGTTCGTCATTTC
ATCAAAGCTGAGAAGTACAAACGTTTCATCAAAGATATCAACGGCATACT
CACCTACACTGGACGAATACTCGACAGTGACGAAGCTCAAATCACCACAC
CAATGACGAAAGCTATGACAGATCTCCAATCAACAACCTTCTGTGTGCCT
ATCCTCGACAAGTACTCACCTATCTCCTACGCAATCGTCAACGAAGTTCA
TTGGGATAACAACGTGGTCA Coding sequence (CDS) from alignment at scaffold_244:176693..179112- >TCONS_00054730 ID=TCONS_00054730|Name=TCONS_00054730|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_244:176693..179112- (Clytia hemisphaerica) ATGGCAATCACACTTCGAGATGATGGAGGAAATCAAAAATGTTCAACATT CAACCGATGCATCATTCCTGAGGACGCCGTCGACATCAAAATTTCCACCC TCAATTTTGGAGATGCCAGCAAATCGATCGCAGCTTCAGCCATCTATGGA AGAGTTCTTCGTAAAAACGGGCTCTACTCATGTCAACTGATCTTTGCTCG CTCGAAAATCATCCAAAATCCTTCATCACAGCCAAGAGGAGAGCTTTCGG CAGCCGTCCTGAACACTCACACTGGAGAAGTTGTCAAGCAAGCTCTGCAA TCAAAACATGATGGTTGGACAAATCTCACAGACAGCCAAATCGTCCTTCA CTGGATTCACAACGATGAAATCAAACTGAAACCATTCGTCCACAATCGAG TGATTGAAGTCCAACGATTTACAAACCCAAACGATTGGTTCTACATCAAG ACAGATCAAATGCTAGCCGACATCGCAACAAGAAGAGGAGCTTCACTGCA AGATGTTGACAGCCAATCAAGATGGATCAATGGAGACAAGTGGATGACTC AAAAGGATCTTCCCATTAAATCGGTAAGAGATATTATTCTTAACCTTACT GAAATCAACGAAATCAAGAAAGAGACTTCAACTGTGGTATCAACAAGTTG CAATTTTGCATCAAGGCAAGGAACTGGTCTTCCAGACGAAGTGAAGAAGA GATATCTGTTCTCCTCTTATCTATTGGATCCGAACAAGTTTCCATTCAAG AAAGTGGTTAGGATTCTAGCAATTGTTTATAAATATTACTATGCACTCAA GTCTTTAGCAAAGGTTAAAGGTCCAAAGAAGTTCCCCGACATTTCAATGG TCGACAAATCAATGATCATCCTATCGAGTGACGAGATCAAACGTGCTGAA CACTACTACTGGTGGAAAGGTTCAGCAGAAGTTCGTCATTTCATCAAAGC TGAGAAGTACAAACGTTTCATCAAAGATATCAACGGCATACTCACCTACA CTGGACGAATACTCGACAGTGACGAAGCTCAAATCACCACACCAATGACG AAAGCTATGACAGATCTCCAATCAACAACCTTCTGTGTGCCTATCCTCGA CAAGTACTCACCTATCTCCTACGCAATCGTCAACGAAGTTCATTGGGATA ACAACGTGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054730-exon-scaffold_244-1575043694:178614..179112 | TCONS_00054730-exon-scaffold_244-1575043694:178614..179112 | Clytia hemisphaerica | exon |
TCONS_00054730-exon-scaffold_244-1575043694:176693..178524 | TCONS_00054730-exon-scaffold_244-1575043694:176693..178524 | Clytia hemisphaerica | exon |
TCONS_00054730-exon-scaffold_244-1510915933:178614..179112 | TCONS_00054730-exon-scaffold_244-1510915933:178614..179112 | Clytia hemisphaerica | exon |
TCONS_00054730-exon-scaffold_244-1510915933:176693..178524 | TCONS_00054730-exon-scaffold_244-1510915933:176693..178524 | Clytia hemisphaerica | exon |
TCONS_00054730-exon-scaffold_244-1491911889:178614..179112 | TCONS_00054730-exon-scaffold_244-1491911889:178614..179112 | Clytia hemisphaerica | exon |
TCONS_00054730-exon-scaffold_244-1491911889:176693..178524 | TCONS_00054730-exon-scaffold_244-1491911889:176693..178524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_244 | supercontig | scaffold_244:176693..179112 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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