TCONS_00054730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054730
Unique NameTCONS_00054730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054730 ID=TCONS_00054730|Name=TCONS_00054730|organism=Clytia hemisphaerica|type=transcript|length=2331bp
GACCAGCAGCATTCATGAAGAAGTCGAACAGCACCTCATCAACAAATCAG
TTCACGTCGACATCGAAAATAAAATCACGACTGCTACTCTACCATTCACG
AAAGACCCAACAATTTGTCTTGAACCAAATCGAAACAAGGCGATGAAAGT
TTACCTTCAACAAGTCAACCGAATCAACAAGTACGAACAAGACAAACAAG
ATGTTATCAAGTCTGAACGCAAACTCCAAGACCTCGGTCACGTTGACTTT
GTTCGCAATCTCCCAATCAAATCACAGCAAGCACTTCAAGCCAACGTCAC
AAAGAACTACATCCCCTTGAGGGCGGTGTGGAAACCGAATTCGTTATCAA
CTCCGTGTCGTATAGTCTTCGACGCCTCGCAGCCAACTGGAAGTGGTCAC
TCACTCAATTCAATCCTCGCCAAAGGCTCCAACGGCATGAATAGACTCGT
TGACATCTTCATTCGTTGGTTCACTCAAAGAATCGCCTTACACACAGACA
TTGCTAAGATGTACAACTCGATTAAGCTTGCCGAATCCGACTGGTGTTAC
CAACGCTATCTCTGGAACGATTCCCTCAACGTTGGATCATCTCCCGAaga
aaagattataaaaacaCTAATCTACGGTGTTAAATCGTCAGGGAATCAAT
CGGAACGTGGACTCCGCCAAACCGCCCACCTTATGAAAGAGCAATATCCA
GACGTATCCAAGATAATCGAAAGATATGTGTATGTCACCGGTGCGTCACC
GGTGAGGAATCCATCGACCTTGCCATGCAAAGAGCTGATGAAATGGAGAT
TGTCTGCTCAAAGGGAGGATTTGGACTCAAAGGATTCACCTTTTCAGGAA
AAGATCCAATCGACAAGCTTTCTGCTGACGGTAAAAGTATCCACGTTGGA
GGTATTCAATGGCTCTCCAAAGACGACGTTATTTCAATCGATTTCGCTGA
GCTCAACTTTGCGAAGAAGGTCCGAGGAAAGAAGCCAACTACTCAAAAGG
AAATCCCAGCTAAACTCACTCGTCGACACTGTGTATCAAAAGCAGCGGAA
ATCTTCGAcatcactgggaaattgacccCATTTACTGCGGCATTGAAGCT
CGACCTCCATGACTTAGTTGAACGTAAGCTAGGTTGGGATGATATCATTC
CAGATTCATTTCGTCCAATATGGCAATCACACTTCGAGATGATGGAGGAA
ATCAAAAATGTTCAACATTCAACCGATGCATCATTCCTGAGGACGCCGTC
GACATCAAAATTTCCACCCTCAATTTTGGAGATGCCAGCAAATCGATCGC
AGCTTCAGCCATCTATGGAAGAGTTCTTCGTAAAAACGGGCTCTACTCAT
GTCAACTGATCTTTGCTCGctcgaaaatcatccaaaatccTTCATCACAG
CCAAGAGGAGAGCTTTCGGCAGCCGTCCTGAACACTCACACTGGAGAAGT
TGTCAAGCAAGCTCTGCAATCAAAACATGATGGTTGGACAAATCTCACAG
ACAGCCAAATCGTCCTTCACTGGATTCACAACGATGAAATCAAACTGAAA
CCATTCGTCCACAATCGAGTGATTGAAGTCCAACGATTTACAAACCCAAA
CGATTGGTTCTACATCAAGACAGATCAAATGCTAGCCGACATCGCAACAA
GAAGAGGAGCTTCACTGCAAGATGTTGACAGCCAATCAAGATGGATCAAT
GGAGACAAGTGGATGACTCAAAAGGATCTTCCCATTAAATCGGTAAGAGA
TATTATTCTTAACCTTACTGAAATCAACGAAATCAAGAAAGAGACTTCAA
CTGTGGTATCAACAAGTTGCAATTTTGCATCAAGGCAAGGAACTGGTCTT
CCAGACGAAGTGAAGAAGAGATATCTGTTCTCCTCTTATCTATTGGATCC
GAACAAGTTTCCATTCAAGAAAGTGGTTAGGATTCTAGCAATTGTTTATA
AATATTACTATGCACTCAAGTCTTTAGCAAAGGTTAAAGGTCCAAAGAAG
TTCCCCGACATTTCAATGGTCGACAAATCAATGATCATCCTATCGAGTGA
CGAGATCAAACGTGCTGAACACTACTACTGGTGGAAAGGTTCAGCAGAAG
TTCGTCATTTCATCAAAGCTGAGAAGTACAAACGTTTCATCAAAGATATC
AACGGCATACTCACCTACACTGGACGAATACTCGACAGTGACGAAGCTCA
AATCACCACACCAATGACGAAAGCTATGACAGATCTCCAATCAACAACCT
TCTGTGTGCCTATCCTCGACAAGTACTCACCTATCTCCTACGCAATCGTC
AACGAAGTTCATTGGGATAACAACGTGGTCA
Run BLAST on NCBI

protein sequence of TCONS_00054730-protein

>TCONS_00054730-protein ID=TCONS_00054730-protein|Name=TCONS_00054730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MAITLRDDGGNQKCSTFNRCIIPEDAVDIKISTLNFGDASKSIAASAIYG
RVLRKNGLYSCQLIFARSKIIQNPSSQPRGELSAAVLNTHTGEVVKQALQ
SKHDGWTNLTDSQIVLHWIHNDEIKLKPFVHNRVIEVQRFTNPNDWFYIK
TDQMLADIATRRGASLQDVDSQSRWINGDKWMTQKDLPIKSVRDIILNLT
EINEIKKETSTVVSTSCNFASRQGTGLPDEVKKRYLFSSYLLDPNKFPFK
KVVRILAIVYKYYYALKSLAKVKGPKKFPDISMVDKSMIILSSDEIKRAE
HYYWWKGSAEVRHFIKAEKYKRFIKDINGILTYTGRILDSDEAQITTPMT
KAMTDLQSTTFCVPILDKYSPISYAIVNEVHWDNNVV
Run BLAST on NCBI

transcript from alignment at scaffold_244:176693..179112-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054730 ID=TCONS_00054730|Name=TCONS_00054730|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at scaffold_244:176693..179112- (Clytia hemisphaerica)
GACCAGCAGCATTCATGAAGAAGTCGAACAGCACCTCATCAACAAATCAG
TTCACGTCGACATCGAAAATAAAATCACGACTGCTACTCTACCATTCACG
AAAGACCCAACAATTTGTCTTGAACCAAATCGAAACAAGGCGATGAAAGT
TTACCTTCAACAAGTCAACCGAATCAACAAGTACGAACAAGACAAACAAG
ATGTTATCAAGTCTGAACGCAAACTCCAAGACCTCGGTCACGTTGACTTT
GTTCGCAATCTCCCAATCAAATCACAGCAAGCACTTCAAGCCAACGTCAC
AAAGAACTACATCCCCTTGAGGGCGGTGTGGAAACCGAATTCGTTATCAA
CTCCGTGTCGTATAGTCTTCGACGCCTCGCAGCCAACTGGAAGTGGTCAC
TCACTCAATTCAATCCTCGCCAAAGGCTCCAACGGCATGAATAGACTCGT
TGACATCTTCATTCGTTGGTTCACTCAAAGAATCGCCTTACACACAGACA
TTACTAAGATGTACAACTCGATTAAGCTTGCCGAATCCGACTGGTGTTAC
CAACGTTATCNCCTCAAAGAATCGACTTCCACACAGACATTGCTAAGATG
TACAACTCGATTAAGCTTGCCGAATCCGACTGGTGTTACCAACGCTATCT
CTGGAACGATTCCCTCAACGTTGGATCATCTCCCGAAGAAAAGATTATAA
AAACACTAATCTACGGTGTTAAATCGTCAGGGAATCAATCGGAACGTGGA
CTCCGCCAAACCGCCCACCTTATGAAAGAGCAATATCCAGACGTATCCAA
GATAATCGAAAGATATGTGTATGTCACCGGTGCGTCACCGGTGAGGAATC
CATCGACCTTGCCATGCAAAGAGCTGATGAAATGGAGATTGTCTGCTCAA
AGGGAGGATTTGGACTCAAAGGATTCACCTTTTCAGGAAAAGATCCAATC
GACAAGCTTTCTGCTGACGGTAAAAGTATCCACGTTGGAGGTATTCAATG
GCTCTCCAAAGACGACGTTATTTCAATCGATTTCGCTGAGCTCAACTTTG
CGAAGAAGGTCCGAGGAAAGAAGCCAACTACTCAAAAGGAAATCCCAGCT
AAACTCACTCGTCGACACTGTGTATCAAAAGCAGCGGAAATCTTCGACAT
CACTGGGAAATTGACCCCATTTACTGCGGCATTGAAGCTCGACCTCCATG
ACTTAGTTGAACGTAAGCTAGGTTGGGATGATATCATTCCAGATTCATTT
CGTCCAATATGGCAATCACACTTCGAGATGATGGAGGAAATCAAAAATGT
TCAACATTCAACCGATGCATCATTCCTGAGGACGCCGTCGACATCAAAAT
TTCCACCCTCAATTTTGGAGATGCCAGCAAATCGATCGCAGCTTCAGCCA
TCTATGGAAGAGTTCTTCGTAAAAACGGGCTCTACTCATGTCAACTGATC
TTTGCTCGCTCGAAAATCATCCAAAATCCTTCATCACAGCCAAGAGGAGA
GCTTTCGGCAGCCGTCCTGAACACTCACACTGGAGAAGTTGTCAAGCAAG
CTCTGCAATCAAAACATGATGGTTGGACAAATCTCACAGACAGCCAAATC
GTCCTTCACTGGATTCACAACGATGAAATCAAACTGAAACCATTCGTCCA
CAATCGAGTGATTGAAGTCCAACGATTTACAAACCCAAACGATTGGTTCT
ACATCAAGACAGATCAAATGCTAGCCGACATCGCAACAAGAAGAGGAGCT
TCACTGCAAGATGTTGACAGCCAATCAAGATGGATCAATGGAGACAAGTG
GATGACTCAAAAGGATCTTCCCATTAAATCGGTAAGAGATATTATTCTTA
ACCTTACTGAAATCAACGAAATCAAGAAAGAGACTTCAACTGTGGTATCA
ACAAGTTGCAATTTTGCATCAAGGCAAGGAACTGGTCTTCCAGACGAAGT
GAAGAAGAGATATCTGTTCTCCTCTTATCTATTGGATCCGAACAAGTTTC
CATTCAAGAAAGTGGTTAGGATTCTAGCAATTGTTTATAAATATTACTAT
GCACTCAAGTCTTTAGCAAAGGTTAAAGGTCCAAAGAAGTTCCCCGACAT
TTCAATGGTCGACAAATCAATGATCATCCTATCGAGTGACGAGATCAAAC
GTGCTGAACACTACTACTGGTGGAAAGGTTCAGCAGAAGTTCGTCATTTC
ATCAAAGCTGAGAAGTACAAACGTTTCATCAAAGATATCAACGGCATACT
CACCTACACTGGACGAATACTCGACAGTGACGAAGCTCAAATCACCACAC
CAATGACGAAAGCTATGACAGATCTCCAATCAACAACCTTCTGTGTGCCT
ATCCTCGACAAGTACTCACCTATCTCCTACGCAATCGTCAACGAAGTTCA
TTGGGATAACAACGTGGTCA

Coding sequence (CDS) from alignment at scaffold_244:176693..179112-

>TCONS_00054730 ID=TCONS_00054730|Name=TCONS_00054730|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_244:176693..179112- (Clytia hemisphaerica)
ATGGCAATCACACTTCGAGATGATGGAGGAAATCAAAAATGTTCAACATT
CAACCGATGCATCATTCCTGAGGACGCCGTCGACATCAAAATTTCCACCC
TCAATTTTGGAGATGCCAGCAAATCGATCGCAGCTTCAGCCATCTATGGA
AGAGTTCTTCGTAAAAACGGGCTCTACTCATGTCAACTGATCTTTGCTCG
CTCGAAAATCATCCAAAATCCTTCATCACAGCCAAGAGGAGAGCTTTCGG
CAGCCGTCCTGAACACTCACACTGGAGAAGTTGTCAAGCAAGCTCTGCAA
TCAAAACATGATGGTTGGACAAATCTCACAGACAGCCAAATCGTCCTTCA
CTGGATTCACAACGATGAAATCAAACTGAAACCATTCGTCCACAATCGAG
TGATTGAAGTCCAACGATTTACAAACCCAAACGATTGGTTCTACATCAAG
ACAGATCAAATGCTAGCCGACATCGCAACAAGAAGAGGAGCTTCACTGCA
AGATGTTGACAGCCAATCAAGATGGATCAATGGAGACAAGTGGATGACTC
AAAAGGATCTTCCCATTAAATCGGTAAGAGATATTATTCTTAACCTTACT
GAAATCAACGAAATCAAGAAAGAGACTTCAACTGTGGTATCAACAAGTTG
CAATTTTGCATCAAGGCAAGGAACTGGTCTTCCAGACGAAGTGAAGAAGA
GATATCTGTTCTCCTCTTATCTATTGGATCCGAACAAGTTTCCATTCAAG
AAAGTGGTTAGGATTCTAGCAATTGTTTATAAATATTACTATGCACTCAA
GTCTTTAGCAAAGGTTAAAGGTCCAAAGAAGTTCCCCGACATTTCAATGG
TCGACAAATCAATGATCATCCTATCGAGTGACGAGATCAAACGTGCTGAA
CACTACTACTGGTGGAAAGGTTCAGCAGAAGTTCGTCATTTCATCAAAGC
TGAGAAGTACAAACGTTTCATCAAAGATATCAACGGCATACTCACCTACA
CTGGACGAATACTCGACAGTGACGAAGCTCAAATCACCACACCAATGACG
AAAGCTATGACAGATCTCCAATCAACAACCTTCTGTGTGCCTATCCTCGA
CAAGTACTCACCTATCTCCTACGCAATCGTCAACGAAGTTCATTGGGATA
ACAACGTGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034478XLOC_034478Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054730-proteinTCONS_00054730-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054730-exon-scaffold_244-1575043694:178614..179112TCONS_00054730-exon-scaffold_244-1575043694:178614..179112Clytia hemisphaericaexon
TCONS_00054730-exon-scaffold_244-1575043694:176693..178524TCONS_00054730-exon-scaffold_244-1575043694:176693..178524Clytia hemisphaericaexon
TCONS_00054730-exon-scaffold_244-1510915933:178614..179112TCONS_00054730-exon-scaffold_244-1510915933:178614..179112Clytia hemisphaericaexon
TCONS_00054730-exon-scaffold_244-1510915933:176693..178524TCONS_00054730-exon-scaffold_244-1510915933:176693..178524Clytia hemisphaericaexon
TCONS_00054730-exon-scaffold_244-1491911889:178614..179112TCONS_00054730-exon-scaffold_244-1491911889:178614..179112Clytia hemisphaericaexon
TCONS_00054730-exon-scaffold_244-1491911889:176693..178524TCONS_00054730-exon-scaffold_244-1491911889:176693..178524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_244supercontigscaffold_244:176693..179112 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63435	1.52458	0.340148	0.576075	0.678059	0.350815	0.565496	0.671129	0.198999	0.474871	0.372649	0.303293	0.177291	0.173212	0.174528	0.25056	0.150611	0.250244	0.0710907	0.327796	0.0392503	0.163744	0.279463	0.459695	0.147504	0.149669	0.0458502	0.0244663	0.208874	0.314782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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