TCONS_00054741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054741
Unique NameTCONS_00054741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054741 ID=TCONS_00054741|Name=TCONS_00054741|organism=Clytia hemisphaerica|type=transcript|length=304bp
NAGGTCTTGACTTTATTGAGGTCACGCCCTTTGATCTCGGCATcgataaa
tttctcaaatgaGATAAAATGTTTGAAAGTAAGTTCATACCCTTCTTTGA
GCTTAGTGACGTCCTCAAGTTTACCGGTAGGGCATTTCGAGATGAGAGTA
GCAGTGTGAGTagaaagtctctcaaagtcCTTCGACATTGACGTGATGCA
TTTTTTCATCTCTTCGAGTTCCTCATTAGTTGATTCAGTGATGTTTGTTT
TAACTTCCTCAAGGTTCGTACCGTTGGGTTCCTGGATGTTTGGTTGGATT
TTCG
Run BLAST on NCBI

protein sequence of TCONS_00054741-protein

>TCONS_00054741-protein ID=TCONS_00054741-protein|Name=TCONS_00054741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
KIQPNIQEPNGTNLEEVKTNITESTNEELEEMKKCITSMSKDFERLSTHT
ATLISKCPTGKLEDVTKLKEGYELTFKHFISFEKFIDAEIKGRDLNKVKT
Run BLAST on NCBI

transcript from alignment at scaffold_244:172276..172579

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054741 ID=TCONS_00054741|Name=TCONS_00054741|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at scaffold_244:172276..172579 (Clytia hemisphaerica)
CGAAAATCCAACCAAACATCCAGGAACCCAACGGTACGAACCTTGAGGAA
GTTAAAACAAACATCACTGAATCAACTAATGAGGAACTCGAAGAGATGAA
AAAATGCATCACGTCAATGTCGAAGgactttgagagactttctACTCACA
CTGCTACTCTCATCTCGAAATGCCCTACCGGTAAACTTGAGGACGTCACT
AAGCTCAAAGAAGGGTATGAACTTACTTTCAAACATTTTATCtcatttga
gaaatttatcgATGCCGAGATCAAAGGGCGTGACCTCAATAAAGTCAAGA
CCTN

Coding sequence (CDS) from alignment at scaffold_244:172276..172579

>TCONS_00054741 ID=TCONS_00054741|Name=TCONS_00054741|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_244:172276..172579 (Clytia hemisphaerica)
AAAATCCAACCAAACATCCAGGAACCCAACGGTACGAACCTTGAGGAAGT
TAAAACAAACATCACTGAATCAACTAATGAGGAACTCGAAGAGATGAAAA
AATGCATCACGTCAATGTCGAAGgactttgagagactttctACTCACACT
GCTACTCTCATCTCGAAATGCCCTACCGGTAAACTTGAGGACGTCACTAA
GCTCAAAGAAGGGTATGAACTTACTTTCAAACATTTTATCtcatttgaga
aatttatcgATGCCGAGATCAAAGGGCGTGACCTCAATAAAGTCAAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034489XLOC_034489Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054741-proteinTCONS_00054741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054741-exon-scaffold_244-1491911889:172276..172579TCONS_00054741-exon-scaffold_244-1491911889:172276..172579Clytia hemisphaericaexon
TCONS_00054741-exon-scaffold_244-1510915933:172276..172579TCONS_00054741-exon-scaffold_244-1510915933:172276..172579Clytia hemisphaericaexon
TCONS_00054741-exon-scaffold_244-1575043694:172276..172579TCONS_00054741-exon-scaffold_244-1575043694:172276..172579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_244supercontigscaffold_244:172276..172579 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56155	2.20306	1.81721	0	0.792371	1.59046	1.22943	0.449094	0	1.51957	0	1.67324	0.354149	0	0	0.126707	0.5602	0	0	0.710942	0	0.418521	0.133184	0.777888	0	0	0	0	1.01598	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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