|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054742 ID=TCONS_00054742|Name=TCONS_00054742|organism=Clytia hemisphaerica|type=transcript|length=1340bp
GCAATCAAATCACCATGAAGTGGCTGACCTCGTGTGCAGAAGAAGACGAG
ACACCTGATGGTAAAGAGTTGTGGACTAAACTTCTCACCTTCCTGGAACG
AGAAATCAAAATATACCAACAGAAAGAGCTTTTCAACTTCGCCAATGGCC
AACAGAATCAACAGGACAACCCACCGAAAGGAGGAAAGGTTGGTCGTTCC
ATTTTTTCAATAAACCTAACGCCTGTCAAATCTGTGGTGCCACTGATCAT
TTCTCAACTACTGGTCCTAGTAACTCCAAACTCACTCAATACTATGTCTG
CGagaaattctcaaaaatgtctCCTCGTCAAAGATTTAAGCACCTATCCA
GTAATAACTTATGTTTTCAATGCTTATTTCCGGGAGCACTTGCCAACACA
GGACGACACCGTGATGGACGTTGCCAACACGACTTTGTATGCCCACACGA
AAGTCATGATCAATATCCAATCAAGAAACACGTTTTGGTGTGCGAGGAAC
ACAAGACGAATCCTCAAAACGAACAACTTCTCAATGACTTCAAGGCAAGG
TTCATTCGAAACCCTAATCTTCCAGACTGTGCAAAGAATATCCAACTAGT
CCATCACGTCGACATTCAACCTGGTGACTACCATGCAAACGCCAACAATC
AATCCGAGATAGCCATCTACATGCTACAACAAATATCAATTAACAATCAA
ACATATATGTCGTCTTCTACGATACAGGGTGCAGCGACTTCGTCATCTGC
TCAGAGGCAGCCAAACGCCTTAAAGACAATGCAACACTCGAATCCAACGA
ATCAATCAATATTGGTGGAGTCGGTGGTGTATCAGCCAAAACACGTGGAG
ATTACACTGTACGCATTCCAACAGCCGATGGCCCACCAGCAACTTTCTTT
GGACCATCCCTGGATCGAATCACCCACAAATTACCCACAAAGTACCCACT
TCAAGAGGCTTACAACGATCTGAAATcatcttttttgaaagatggGAGGA
GTATAGCCAACCTTCCAACAATCCCAACATCAATTGGTGGTGAAGTCGAC
CTGATGATCGGCATCAGATTTCTACGTTACCATCCCGAACCAATCTTCAA
AATGCCTTCTGGATTGACGATTTATAAATCTGCATTCAAGAATCCAGATG
GAAGTCGGGGTGTTATTGGTGGACCTCATCAAATTTTCTCATCAATCAAC
AAGCAAGGTATACACTTCACTTCGTTCTTTTCTAACCAACTTCGATCTTA
TTAAGTAGGATATCAAGTCAATCCTGATGTTCGATTATTGGGATACAGCT
CCAACCACGTCAACGTCGAATCACATGTCAAACGTGAAAG Run BLAST on NCBI protein sequence of TCONS_00054742-protein >TCONS_00054742-protein ID=TCONS_00054742-protein|Name=TCONS_00054742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MSPRQRFKHLSSNNLCFQCLFPGALANTGRHRDGRCQHDFVCPHESHDQY
PIKKHVLVCEEHKTNPQNEQLLNDFKARFIRNPNLPDCAKNIQLVHHVDI
QPGDYHANANNQSEIAIYMLQQISINNQTYMSSSTIQGAATSSSAQRQPN
ALKTMQHSNPTNQSILVESVVYQPKHVEITLYAFQQPMAHQQLSLDHPWI
ESPTNYPQSTHFKRLTTI Run BLAST on NCBI transcript from alignment at scaffold_244:179208..180547 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054742 ID=TCONS_00054742|Name=TCONS_00054742|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at scaffold_244:179208..180547 (Clytia hemisphaerica)
CTTTCACGTTTGACATGTGATTCGACGTTGACGTGGTTGGAGCTGTATCC
CAATAATCGAACATCAGGATTGACTTGATATCCTACTTAATAAGATCGAA
GTTGGTTAGAAAAGAACGAAGTGAAGTGTATACCTTGCTTGTTGATTGAT
GAGAAAATTTGATGAGGTCCACCAATAACACCCCGACTTCCATCTGGATT
CTTGAATGCAGATTTATAAATCGTCAATCCAGAAGGCATTTTGAAGATTG
GTTCGGGATGGTAACGTAGAAATCTGATGCCGATCATCAGGTCGACTTCA
CCACCAATTGATGTTGGGATTGTTGGAAGGTTGGCTATACTCCTCccatc
tttcaaaaaagatgATTTCAGATCGTTGTAAGCCTCTTGAAGTGGGTACT
TTGTGGGTAATTTGTGGGTGATTCGATCCAGGGATGGTCCAAAGAAAGTT
GCTGGTGGGCCATCGGCTGTTGGAATGCGTACAGTGTAATCTCCACGTGT
TTTGGCTGATACACCACCGACTCCACCAATATTGATTGATTCGTTGGATT
CGAGTGTTGCATTGTCTTTAAGGCGTTTGGCTGCCTCTGAGCAGATGACG
AAGTCGCTGCACCCTGTATCGTAGAAGACGACATATATGTTTGATTGTTA
ATTGATATTTGTTGTAGCATGTAGATGGCTATCTCGGATTGATTGTTGGC
GTTTGCATGGTAGTCACCAGGTTGAATGTCGACGTGATGGACTAGTTGGA
TATTCTTTGCACAGTCTGGAAGATTAGGGTTTCGAATGAACCTTGCCTTG
AAGTCATTGAGAAGTTGTTCGTTTTGAGGATTCGTCTTGTGTTCCTCGCA
CACCAAAACGTGTTTCTTGATTGGATATTGATCATGACTTTCGTGTGGGC
ATACAAAGTCGTGTTGGCAACGTCCATCACGGTGTCGTCCTGTGTTGGCA
AGTGCTCCCGGAAATAAGCATTGAAAACATAAGTTATTACTGGATAGGTG
CTTAAATCTTTGACGAGGagacatttttgagaatttctCGCAGACATAGT
ATTGAGTGAGTTTGGAGTTACTAGGACCAGTAGTTGAGAAATGATCAGTG
GCACCACAGATTTGACAGGCGTTAGGTTTATTGAAAAAATGGAACGACCA
ACCTTTCCTCCTTTCGGTGGGTTGTCCTGTTGATTCTGTTGGCCATTGGC
GAAGTTGAAAAGCTCTTTCTGTTGGTATATTTTGATTTCTCGTTCCAGGA
AGGTGAGAAGTTTAGTCCACAACTCTTTACCATCAGGTGTCTCGTCTTCT
TCTGCACACGAGGTCAGCCACTTCATGGTGATTTGATTGC Coding sequence (CDS) from alignment at scaffold_244:179208..180547 >TCONS_00054742 ID=TCONS_00054742|Name=TCONS_00054742|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_244:179208..180547 (Clytia hemisphaerica)
TCAGATCGTTGTAAGCCTCTTGAAGTGGGTACTTTGTGGGTAATTTGTGG
GTGATTCGATCCAGGGATGGTCCAAAGAAAGTTGCTGGTGGGCCATCGGC
TGTTGGAATGCGTACAGTGTAATCTCCACGTGTTTTGGCTGATACACCAC
CGACTCCACCAATATTGATTGATTCGTTGGATTCGAGTGTTGCATTGTCT
TTAAGGCGTTTGGCTGCCTCTGAGCAGATGACGAAGTCGCTGCACCCTGT
ATCGTAGAAGACGACATATATGTTTGATTGTTAATTGATATTTGTTGTAG
CATGTAGATGGCTATCTCGGATTGATTGTTGGCGTTTGCATGGTAGTCAC
CAGGTTGAATGTCGACGTGATGGACTAGTTGGATATTCTTTGCACAGTCT
GGAAGATTAGGGTTTCGAATGAACCTTGCCTTGAAGTCATTGAGAAGTTG
TTCGTTTTGAGGATTCGTCTTGTGTTCCTCGCACACCAAAACGTGTTTCT
TGATTGGATATTGATCATGACTTTCGTGTGGGCATACAAAGTCGTGTTGG
CAACGTCCATCACGGTGTCGTCCTGTGTTGGCAAGTGCTCCCGGAAATAA
GCATTGAAAACATAAGTTATTACTGGATAGGTGCTTAAATCTTTGACGAG
Gagacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054742-exon-scaffold_244-1491911889:179208..180547 | TCONS_00054742-exon-scaffold_244-1491911889:179208..180547 | Clytia hemisphaerica | exon |
| TCONS_00054742-exon-scaffold_244-1510915933:179208..180547 | TCONS_00054742-exon-scaffold_244-1510915933:179208..180547 | Clytia hemisphaerica | exon |
| TCONS_00054742-exon-scaffold_244-1575043694:179208..180547 | TCONS_00054742-exon-scaffold_244-1575043694:179208..180547 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_244 | supercontig | scaffold_244:179208..180547 . |
Blast
The following BLAST results are available for this feature:
|
