TCONS_00054745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054745
Unique NameTCONS_00054745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054745 ID=TCONS_00054745|Name=TCONS_00054745|organism=Clytia hemisphaerica|type=transcript|length=907bp
AAATCATTTTTTATCAGCAAAGTCAGTTAGGCTTGGTCAAGTTGGTCATG
TCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCATCATGGAT
GTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCA
TGCTTCCCTGACAAAGttaTAAGCTACAACACTGGTTTATGGGGCAGTTG
GCGTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAA
CAAATATCGAAAGCCACCAAGGAGATGGCGATGACACGGCATTAAATGCG
ATCTCTTTAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATA
CACCAATTGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGAT
TTTACGGTGgaatgctaaaatttgaaagCCACCTGgggCCTGATGATGAC
GATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAGTG
GTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACT
GTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTGAC
CAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCG
ATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGGGG
AGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttttt
tgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcgat
tgttttgttagaagcactttttatacatttttggaaccttcaaccttaga
gaaatcgaaattacgatgcttctaaatttttttcggacactttgatgtga
ttttcgg
Run BLAST on NCBI

transcript from alignment at scaffold_245:11266..14174+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054745 ID=TCONS_00054745|Name=TCONS_00054745|organism=Clytia hemisphaerica|type=transcript|length=2909bp|location=Sequence derived from alignment at scaffold_245:11266..14174+ (Clytia hemisphaerica)
AAATCATTTTTTATCAGCAAAGTCAGTTAGGGTAAACAAAATCATGGTAT TCCATAGGGTTAAAGAATTTTCTAATCGGAATTACATAGAGGTAAGGGAT TTGTAGATCCGGAATTCCATAGGAGCAGATGATTTGAAGTTCCAGAATTC CATAGGGGTAAGGGAATTTTCGGTccggaattccatgggggtgcACCTAA AAAAAGgaacctcctcaacaggggggtaCGGACTTtatctggaaaagccc attgcagaaattgaaaatatgttttcttCAGTAGATCAGCTTTTGCCTCT AAGGTTTCCCTGAGCTTTCATGGCGTTTGAATTTGAAGACTGTATTATGA TTCATgatcatccaaaaattttgaagccgcTTCGGATGTTGTCAatattt tgggtatttttgtccattttcctaaaagaaaatgggtattttagagtcca cggagccttaaaatgttcttaacttgttcttaatattttggccattgaag ccttttgttcttatatagtttgttcttactaGATTTTTTGGCaagttttt taagcaaagtATAACTATTATCCTGCCGCTCGTACTGTCTTCAAGAAAAT TGGGAACTGATTTCTCTTTATCTTGTATTCTTTTACCAGCTTGGTCAAGT TGGTCATGTCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCA TCATGGATGTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTG AATCTTCATGCTTCCCTGACAAAGGTAATGCAACCCTGTCTCAAGTGAAA GTGCTTCTTAGTTTTTTAAAGAGGAAAACAAGTACTTGACAGGGTTATTA TTCACTGGGGACGAGTTTAGCCGCATTCGGTGAAGGGTTTTTACGTCAAA TACTGAATGTGGATTTTGTTAATTTCAattattgccccgcaggggaTTTT GTTCCTTCACGTAGtggacttgctcgccagaaaaatattcatgtcgTTGA TGTTTCTTCCGATTCTGAGCGGACCGCCGCTGTTAAAAAATGGTCACGCG CACCTATTGTTTTGTCTACTTTGTTGCGACTTGTATTGATTTTAGTTCTA TTCTATTCTTCTATTTATTAAATTCTatattcttacaaagtaaaacaggg acagtgcacaatatgtgcattatttttcttataaacacaAACTTTATTAG AATCatatcaataactcttgatagacagccatATACTTGGTAATTAGTTC CTACAAagtaacaacaacaacaagggatatttaaaagatattttactgTG TGCGCCAAGCTGTACACCTCGTTTCTTTTTTATCAGCCAATCAGTTCATT CTCAATTATGAATGCGTTCGCGAGGCATTCATAGCGCGACcgctacttgc tagtataacCCAAATAGAACGGTCGTAGCGATAATTACTTTTGGAAGTTG CCACTGCCAATTTTCTTTAGCTCAAATTTACTTTTCATTCAATCTACACA CATATACCATCTATCTAcactaaaaaattattttttagttaTAAGCTACA ACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATTGCCCAAAAGGA ACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCACCAAGGAGGTAT AGAAtctttcataaaaagttgtttccgAGAATTTCATGGCATGGTTTTTT AAAATCTCTTCAGTTCCTGCCAAGTATAATTTTCATCGTTCttgaaatta atcaaaatacaaaattatctCGGGTTATAAATTGGTTCTCAGGGCAAATT TTCTTATGAAATGGGTTCTATGGTAAATACATGTGTTTTATATCTTATCT TAGAGCAGTTACAACTCTAGATAGAGAGATAGGAATTTACTACTCACTAT AGCTAGATACTGATAGTttttaataaagtttttctCTTTGTTCAATGTAT GTCTCTTTTTATTCCAGATGGCGATGACACGGCATTAAATGCGATCTCTT TAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATACACCAAT TGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGATTTTACGG TGgaatgctaaaatttgaaagCCACCTGGTAATACAAATTGGACTTCTGT AACTTATCATCTCCGAAGAATCAAAAtatcattttaaggcttttaaatTT TCCAGCAGTCAATAATTTCGTTTCTCAAGAACCAAGAACTCAAATTTACC CCGGTTTAAAAGTCATCTTATTGAGTtgatattttaaaagttgataTACC ATTACACCTCCTTAATAAAGTTTGATTACATAGATCCTTCTACTCTtctt atcaaaatatttattcaaattcCAACCCCTCCCACGTGCTAAAATTACCT TGTAAGAAATAAACCTTATtttataatgaattttcaggggCCTGATGATG ACGATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAG TGGTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTA CTGTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTG ACCAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGT CGATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGG GGAGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttt tttgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcg attgttttgttagaagcactttttatacatttttggaaccttcaacctta gagaaatcgaaattacgatgcttctaaatttttttcggacactttgatgt gattttcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034492XLOC_034492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054745-exon-scaffold_245-1491911889:11266..11296TCONS_00054745-exon-scaffold_245-1491911889:11266..11296Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:11266..11296TCONS_00054745-exon-scaffold_245-1510915933:11266..11296Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:11266..11296TCONS_00054745-exon-scaffold_245-1575043694:11266..11296Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:11905..12039TCONS_00054745-exon-scaffold_245-1491911889:11905..12039Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:11905..12039TCONS_00054745-exon-scaffold_245-1510915933:11905..12039Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:11905..12039TCONS_00054745-exon-scaffold_245-1575043694:11905..12039Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:12804..12911TCONS_00054745-exon-scaffold_245-1491911889:12804..12911Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:12804..12911TCONS_00054745-exon-scaffold_245-1510915933:12804..12911Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:12804..12911TCONS_00054745-exon-scaffold_245-1575043694:12804..12911Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:13233..13393TCONS_00054745-exon-scaffold_245-1491911889:13233..13393Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:13233..13393TCONS_00054745-exon-scaffold_245-1510915933:13233..13393Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:13233..13393TCONS_00054745-exon-scaffold_245-1575043694:13233..13393Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:13703..14174TCONS_00054745-exon-scaffold_245-1491911889:13703..14174Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:13703..14174TCONS_00054745-exon-scaffold_245-1510915933:13703..14174Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:13703..14174TCONS_00054745-exon-scaffold_245-1575043694:13703..14174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:11266..14174 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (4.73999 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.88318e-06 4.73999 0 0.98652 0 0 0 0.393349 1.61707 1.84484 1.4067 1.63608 2.57851 2.2787 2.3481 4.29268 2.12865 1.57036e-05 0.0465263 0.115542 0.322194 0.450157 0.920152 2.23471 0 0 0 0.0872066 0.739852 0.515499
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900Expect = 2.33e-17 / Id = 36.20SequenceVMO1
Match NameE-valueIdentityDescription
VMO12.327e-1736.20Vitelline membrane outer layer protein 1 homolog O... [more]
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