Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054745 ID=TCONS_00054745|Name=TCONS_00054745|organism=Clytia hemisphaerica|type=transcript|length=907bp AAATCATTTTTTATCAGCAAAGTCAGTTAGGCTTGGTCAAGTTGGTCATG TCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCATCATGGAT GTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCA TGCTTCCCTGACAAAGttaTAAGCTACAACACTGGTTTATGGGGCAGTTG GCGTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAA CAAATATCGAAAGCCACCAAGGAGATGGCGATGACACGGCATTAAATGCG ATCTCTTTAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATA CACCAATTGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGAT TTTACGGTGgaatgctaaaatttgaaagCCACCTGgggCCTGATGATGAC GATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAGTG GTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACT GTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTGAC CAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCG ATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGGGG AGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttttt tgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcgat tgttttgttagaagcactttttatacatttttggaaccttcaaccttaga gaaatcgaaattacgatgcttctaaatttttttcggacactttgatgtga ttttcgg Run BLAST on NCBI transcript from alignment at scaffold_245:11266..14174+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054745 ID=TCONS_00054745|Name=TCONS_00054745|organism=Clytia hemisphaerica|type=transcript|length=2909bp|location=Sequence derived from alignment at scaffold_245:11266..14174+ (Clytia hemisphaerica) AAATCATTTTTTATCAGCAAAGTCAGTTAGGGTAAACAAAATCATGGTAT
TCCATAGGGTTAAAGAATTTTCTAATCGGAATTACATAGAGGTAAGGGAT
TTGTAGATCCGGAATTCCATAGGAGCAGATGATTTGAAGTTCCAGAATTC
CATAGGGGTAAGGGAATTTTCGGTccggaattccatgggggtgcACCTAA
AAAAAGgaacctcctcaacaggggggtaCGGACTTtatctggaaaagccc
attgcagaaattgaaaatatgttttcttCAGTAGATCAGCTTTTGCCTCT
AAGGTTTCCCTGAGCTTTCATGGCGTTTGAATTTGAAGACTGTATTATGA
TTCATgatcatccaaaaattttgaagccgcTTCGGATGTTGTCAatattt
tgggtatttttgtccattttcctaaaagaaaatgggtattttagagtcca
cggagccttaaaatgttcttaacttgttcttaatattttggccattgaag
ccttttgttcttatatagtttgttcttactaGATTTTTTGGCaagttttt
taagcaaagtATAACTATTATCCTGCCGCTCGTACTGTCTTCAAGAAAAT
TGGGAACTGATTTCTCTTTATCTTGTATTCTTTTACCAGCTTGGTCAAGT
TGGTCATGTCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCA
TCATGGATGTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTG
AATCTTCATGCTTCCCTGACAAAGGTAATGCAACCCTGTCTCAAGTGAAA
GTGCTTCTTAGTTTTTTAAAGAGGAAAACAAGTACTTGACAGGGTTATTA
TTCACTGGGGACGAGTTTAGCCGCATTCGGTGAAGGGTTTTTACGTCAAA
TACTGAATGTGGATTTTGTTAATTTCAattattgccccgcaggggaTTTT
GTTCCTTCACGTAGtggacttgctcgccagaaaaatattcatgtcgTTGA
TGTTTCTTCCGATTCTGAGCGGACCGCCGCTGTTAAAAAATGGTCACGCG
CACCTATTGTTTTGTCTACTTTGTTGCGACTTGTATTGATTTTAGTTCTA
TTCTATTCTTCTATTTATTAAATTCTatattcttacaaagtaaaacaggg
acagtgcacaatatgtgcattatttttcttataaacacaAACTTTATTAG
AATCatatcaataactcttgatagacagccatATACTTGGTAATTAGTTC
CTACAAagtaacaacaacaacaagggatatttaaaagatattttactgTG
TGCGCCAAGCTGTACACCTCGTTTCTTTTTTATCAGCCAATCAGTTCATT
CTCAATTATGAATGCGTTCGCGAGGCATTCATAGCGCGACcgctacttgc
tagtataacCCAAATAGAACGGTCGTAGCGATAATTACTTTTGGAAGTTG
CCACTGCCAATTTTCTTTAGCTCAAATTTACTTTTCATTCAATCTACACA
CATATACCATCTATCTAcactaaaaaattattttttagttaTAAGCTACA
ACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATTGCCCAAAAGGA
ACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCACCAAGGAGGTAT
AGAAtctttcataaaaagttgtttccgAGAATTTCATGGCATGGTTTTTT
AAAATCTCTTCAGTTCCTGCCAAGTATAATTTTCATCGTTCttgaaatta
atcaaaatacaaaattatctCGGGTTATAAATTGGTTCTCAGGGCAAATT
TTCTTATGAAATGGGTTCTATGGTAAATACATGTGTTTTATATCTTATCT
TAGAGCAGTTACAACTCTAGATAGAGAGATAGGAATTTACTACTCACTAT
AGCTAGATACTGATAGTttttaataaagtttttctCTTTGTTCAATGTAT
GTCTCTTTTTATTCCAGATGGCGATGACACGGCATTAAATGCGATCTCTT
TAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATACACCAAT
TGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGATTTTACGG
TGgaatgctaaaatttgaaagCCACCTGGTAATACAAATTGGACTTCTGT
AACTTATCATCTCCGAAGAATCAAAAtatcattttaaggcttttaaatTT
TCCAGCAGTCAATAATTTCGTTTCTCAAGAACCAAGAACTCAAATTTACC
CCGGTTTAAAAGTCATCTTATTGAGTtgatattttaaaagttgataTACC
ATTACACCTCCTTAATAAAGTTTGATTACATAGATCCTTCTACTCTtctt
atcaaaatatttattcaaattcCAACCCCTCCCACGTGCTAAAATTACCT
TGTAAGAAATAAACCTTATtttataatgaattttcaggggCCTGATGATG
ACGATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAG
TGGTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTA
CTGTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTG
ACCAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGT
CGATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGG
GGAGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttt
tttgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcg
attgttttgttagaagcactttttatacatttttggaaccttcaacctta
gagaaatcgaaattacgatgcttctaaatttttttcggacactttgatgt
gattttcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054745-exon-scaffold_245-1491911889:11266..11296 | TCONS_00054745-exon-scaffold_245-1491911889:11266..11296 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1510915933:11266..11296 | TCONS_00054745-exon-scaffold_245-1510915933:11266..11296 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1575043694:11266..11296 | TCONS_00054745-exon-scaffold_245-1575043694:11266..11296 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1491911889:11905..12039 | TCONS_00054745-exon-scaffold_245-1491911889:11905..12039 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1510915933:11905..12039 | TCONS_00054745-exon-scaffold_245-1510915933:11905..12039 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1575043694:11905..12039 | TCONS_00054745-exon-scaffold_245-1575043694:11905..12039 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1491911889:12804..12911 | TCONS_00054745-exon-scaffold_245-1491911889:12804..12911 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1510915933:12804..12911 | TCONS_00054745-exon-scaffold_245-1510915933:12804..12911 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1575043694:12804..12911 | TCONS_00054745-exon-scaffold_245-1575043694:12804..12911 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1491911889:13233..13393 | TCONS_00054745-exon-scaffold_245-1491911889:13233..13393 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1510915933:13233..13393 | TCONS_00054745-exon-scaffold_245-1510915933:13233..13393 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1575043694:13233..13393 | TCONS_00054745-exon-scaffold_245-1575043694:13233..13393 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1491911889:13703..14174 | TCONS_00054745-exon-scaffold_245-1491911889:13703..14174 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1510915933:13703..14174 | TCONS_00054745-exon-scaffold_245-1510915933:13703..14174 | Clytia hemisphaerica | exon |
TCONS_00054745-exon-scaffold_245-1575043694:13703..14174 | TCONS_00054745-exon-scaffold_245-1575043694:13703..14174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_245 | supercontig | scaffold_245:11266..14174 + |
Blast
BLAST of TCONS_00054745 vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.327e-17 Identity = 59/163 (36.20%), Postives = 77/163 (47.24%), Query Frame = 1 Query: 184 GLWGSWRSWEYCPKGTWVVKLQTNIESHQG-DGDDTALNAISLRC--NNDVGTT--ITSGYTNWGTWRAESQKCINGFYGGMLKFESHLGPD---DDDTSTNAIRLICRDDNQWYXXXXXXXXXXTQSTYCPAGYKIVGLQTQIESDQGNGDDTSLNGVRLLC 648
G WG W E CP G + +E QG GDDTALN I L C N +G T + S +WG W +E C G Y ++ F + D+T+ N +R C D + G S +CP G GLQT+I+ +G GDDT+LN RL C
Sbjct: 42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAY--LVAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199
The following BLAST results are available for this feature:
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