TCONS_00054745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054745
Unique NameTCONS_00054745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054745 ID=TCONS_00054745|Name=TCONS_00054745|organism=Clytia hemisphaerica|type=transcript|length=907bp
AAATCATTTTTTATCAGCAAAGTCAGTTAGGCTTGGTCAAGTTGGTCATG
TCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCATCATGGAT
GTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTGAATCTTCA
TGCTTCCCTGACAAAGttaTAAGCTACAACACTGGTTTATGGGGCAGTTG
GCGTTCATGGGAGTATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAA
CAAATATCGAAAGCCACCAAGGAGATGGCGATGACACGGCATTAAATGCG
ATCTCTTTAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATA
CACCAATTGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGAT
TTTACGGTGgaatgctaaaatttgaaagCCACCTGgggCCTGATGATGAC
GATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAGTG
GTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTACT
GTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTGAC
CAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGTCG
ATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGGGG
AGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttttt
tgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcgat
tgttttgttagaagcactttttatacatttttggaaccttcaaccttaga
gaaatcgaaattacgatgcttctaaatttttttcggacactttgatgtga
ttttcgg
Run BLAST on NCBI

transcript from alignment at scaffold_245:11266..14174+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054745 ID=TCONS_00054745|Name=TCONS_00054745|organism=Clytia hemisphaerica|type=transcript|length=2909bp|location=Sequence derived from alignment at scaffold_245:11266..14174+ (Clytia hemisphaerica)
AAATCATTTTTTATCAGCAAAGTCAGTTAGGGTAAACAAAATCATGGTAT
TCCATAGGGTTAAAGAATTTTCTAATCGGAATTACATAGAGGTAAGGGAT
TTGTAGATCCGGAATTCCATAGGAGCAGATGATTTGAAGTTCCAGAATTC
CATAGGGGTAAGGGAATTTTCGGTccggaattccatgggggtgcACCTAA
AAAAAGgaacctcctcaacaggggggtaCGGACTTtatctggaaaagccc
attgcagaaattgaaaatatgttttcttCAGTAGATCAGCTTTTGCCTCT
AAGGTTTCCCTGAGCTTTCATGGCGTTTGAATTTGAAGACTGTATTATGA
TTCATgatcatccaaaaattttgaagccgcTTCGGATGTTGTCAatattt
tgggtatttttgtccattttcctaaaagaaaatgggtattttagagtcca
cggagccttaaaatgttcttaacttgttcttaatattttggccattgaag
ccttttgttcttatatagtttgttcttactaGATTTTTTGGCaagttttt
taagcaaagtATAACTATTATCCTGCCGCTCGTACTGTCTTCAAGAAAAT
TGGGAACTGATTTCTCTTTATCTTGTATTCTTTTACCAGCTTGGTCAAGT
TGGTCATGTCAACATTGTTCAAAGACAGCCATACGAACACGCACGTGTCA
TCATGGATGTTCTAGCAAAACGACCGAAACTAAAGAAATGTGCCAAATTG
AATCTTCATGCTTCCCTGACAAAGGTAATGCAACCCTGTCTCAAGTGAAA
GTGCTTCTTAGTTTTTTAAAGAGGAAAACAAGTACTTGACAGGGTTATTA
TTCACTGGGGACGAGTTTAGCCGCATTCGGTGAAGGGTTTTTACGTCAAA
TACTGAATGTGGATTTTGTTAATTTCAattattgccccgcaggggaTTTT
GTTCCTTCACGTAGtggacttgctcgccagaaaaatattcatgtcgTTGA
TGTTTCTTCCGATTCTGAGCGGACCGCCGCTGTTAAAAAATGGTCACGCG
CACCTATTGTTTTGTCTACTTTGTTGCGACTTGTATTGATTTTAGTTCTA
TTCTATTCTTCTATTTATTAAATTCTatattcttacaaagtaaaacaggg
acagtgcacaatatgtgcattatttttcttataaacacaAACTTTATTAG
AATCatatcaataactcttgatagacagccatATACTTGGTAATTAGTTC
CTACAAagtaacaacaacaacaagggatatttaaaagatattttactgTG
TGCGCCAAGCTGTACACCTCGTTTCTTTTTTATCAGCCAATCAGTTCATT
CTCAATTATGAATGCGTTCGCGAGGCATTCATAGCGCGACcgctacttgc
tagtataacCCAAATAGAACGGTCGTAGCGATAATTACTTTTGGAAGTTG
CCACTGCCAATTTTCTTTAGCTCAAATTTACTTTTCATTCAATCTACACA
CATATACCATCTATCTAcactaaaaaattattttttagttaTAAGCTACA
ACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATTGCCCAAAAGGA
ACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCACCAAGGAGGTAT
AGAAtctttcataaaaagttgtttccgAGAATTTCATGGCATGGTTTTTT
AAAATCTCTTCAGTTCCTGCCAAGTATAATTTTCATCGTTCttgaaatta
atcaaaatacaaaattatctCGGGTTATAAATTGGTTCTCAGGGCAAATT
TTCTTATGAAATGGGTTCTATGGTAAATACATGTGTTTTATATCTTATCT
TAGAGCAGTTACAACTCTAGATAGAGAGATAGGAATTTACTACTCACTAT
AGCTAGATACTGATAGTttttaataaagtttttctCTTTGTTCAATGTAT
GTCTCTTTTTATTCCAGATGGCGATGACACGGCATTAAATGCGATCTCTT
TAAGATGTAACAATGATGTTGGCACTACCATCACAAGTGGATACACCAAT
TGGGGCACTTGGCGAGCCGAGTCACAAAAATGTATTAATGGATTTTACGG
TGgaatgctaaaatttgaaagCCACCTGGTAATACAAATTGGACTTCTGT
AACTTATCATCTCCGAAGAATCAAAAtatcattttaaggcttttaaatTT
TCCAGCAGTCAATAATTTCGTTTCTCAAGAACCAAGAACTCAAATTTACC
CCGGTTTAAAAGTCATCTTATTGAGTtgatattttaaaagttgataTACC
ATTACACCTCCTTAATAAAGTTTGATTACATAGATCCTTCTACTCTtctt
atcaaaatatttattcaaattcCAACCCCTCCCACGTGCTAAAATTACCT
TGTAAGAAATAAACCTTATtttataatgaattttcaggggCCTGATGATG
ACGATACTTCGACCAATGCCATTCGTTTGATATGTCGAGATGACAATCAG
TGGTACGAAAGCGGTGAAGGTGGTTGGGGTTCATGGACACAAAGCACTTA
CTGTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAGATCGAAAGTG
ACCAAGGGAATGGCGACGATACTAGTTTAAATGGTGTTCGATTGTTGTGT
CGATATTTTGGATAATGCAATGGTGCGTGATACGGATAATTGATAAAGGG
GGAGTTTGTGCATTTTTACTTGAACTAATTATTACaaattgtatactttt
tttgttttgttttgttaattaTAGTAGAGggtattttgtaaaatcgctcg
attgttttgttagaagcactttttatacatttttggaaccttcaacctta
gagaaatcgaaattacgatgcttctaaatttttttcggacactttgatgt
gattttcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034492XLOC_034492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054745-exon-scaffold_245-1491911889:11266..11296TCONS_00054745-exon-scaffold_245-1491911889:11266..11296Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:11266..11296TCONS_00054745-exon-scaffold_245-1510915933:11266..11296Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:11266..11296TCONS_00054745-exon-scaffold_245-1575043694:11266..11296Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:11905..12039TCONS_00054745-exon-scaffold_245-1491911889:11905..12039Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:11905..12039TCONS_00054745-exon-scaffold_245-1510915933:11905..12039Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:11905..12039TCONS_00054745-exon-scaffold_245-1575043694:11905..12039Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:12804..12911TCONS_00054745-exon-scaffold_245-1491911889:12804..12911Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:12804..12911TCONS_00054745-exon-scaffold_245-1510915933:12804..12911Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:12804..12911TCONS_00054745-exon-scaffold_245-1575043694:12804..12911Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:13233..13393TCONS_00054745-exon-scaffold_245-1491911889:13233..13393Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:13233..13393TCONS_00054745-exon-scaffold_245-1510915933:13233..13393Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:13233..13393TCONS_00054745-exon-scaffold_245-1575043694:13233..13393Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1491911889:13703..14174TCONS_00054745-exon-scaffold_245-1491911889:13703..14174Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1510915933:13703..14174TCONS_00054745-exon-scaffold_245-1510915933:13703..14174Clytia hemisphaericaexon
TCONS_00054745-exon-scaffold_245-1575043694:13703..14174TCONS_00054745-exon-scaffold_245-1575043694:13703..14174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:11266..14174 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.88318e-06	4.73999	0	0.98652	0	0	0	0.393349	1.61707	1.84484	1.4067	1.63608	2.57851	2.2787	2.3481	4.29268	2.12865	1.57036e-05	0.0465263	0.115542	0.322194	0.450157	0.920152	2.23471	0	0	0	0.0872066	0.739852	0.515499
Blast
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BLAST of TCONS_00054745 vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.327e-17
Identity = 59/163 (36.20%), Postives = 77/163 (47.24%), Query Frame = 1 
Query:  184 GLWGSWRSWEYCPKGTWVVKLQTNIESHQG-DGDDTALNAISLRC--NNDVGTT--ITSGYTNWGTWRAESQKCINGFYGGMLKFESHLGPD---DDDTSTNAIRLICRDDNQWYXXXXXXXXXXTQSTYCPAGYKIVGLQTQIESDQGNGDDTSLNGVRLLC 648
            G WG W   E CP G +       +E  QG  GDDTALN I L C   N +G T  + S   +WG W +E   C  G Y  ++ F   +       D+T+ N +R  C D  +    G         S +CP G    GLQT+I+  +G GDDT+LN  RL C
Sbjct:   42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAY--LVAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199
The following BLAST results are available for this feature:
BLAST of TCONS_00054745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VMO12.327e-1736.20Vitelline membrane outer layer protein 1 homolog O... [more]
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