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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054753 ID=TCONS_00054753|Name=TCONS_00054753|organism=Clytia hemisphaerica|type=transcript|length=1214bp
TTCGTAATTCGCGTGCCTTGCATCTCAAGTATGaTTCGTTGGCGGCAATT
CGGATGTTGGTTTATTTGGTATATAGATGGTGGGCCTGATATTTAAATTC
TTTCGTTAAGCCTGTGAAGTCCAGTTGTTAAGTCTGACTTCTGTTCACTT
GAGAGACACATCATCCAAATGTTTGCtgctgatgatgatgatgatgatga
tgaaagtttataaaaaaagaaaaaagtttagtCCAATAATCAATAGATAC
CTTGTCTAAGAAAAGTTCTCTGCAAAGAGAAACGCCTGTCAAAAATTACA
TGAGATTTAGCACGGAGCTTATCAGTTCTTAAAGCCTGTTTTAAGCTGTC
TTAGAGAAACAATGGTCTATGAAACAGAGGCTTGAACATTTTGTGTTGGT
gtcaaattattaaaattttcattattgttTCTAGTTTTAGAGAATGGTTT
CGGTTGAATAAGAGATGAAGCACTGGGTGCTTGGAGACACGATTCTATGA
CGCACAGTCTTCGTGAACACAGCTCGCTGTTTTAGATCACAGCGATCATA
GTGGgataatttttcacttttttttatttgagcccaaaattttaattttt
ttaaaaaatgatgattcATCTTGCTATCGATTCGAGTTcggttgaatttt
ttttttttttttgagaaaaatattgttttggaATATTTGAACAAAAACAT
ATTGGTACATACGGGAAGTCGTTGAAACTGTTAAATTCCCTTGTTTGACG
GAAATTAGGGGTTACATTTAATACCAATCAATCGTGCTCACTGGCTCGTC
CTATCATCATttcaaagagaagaaaaaaattctttttggatGGCTCCTTT
TGTTATGAAGTGTCTCTCTTGACAGGGTGTATCCTTTTTTTCATACGAAT
GGTATACTTAATAGATAGTATGTTTATTTGAATAACATGAACTTTTATAC
TACGTATCCTGAACGGGGTTCTGGAAGGTGTTCTGTTATATTATGATAAC
TGTAAACCCTTCActatattttttgttgttttttctaacAAAGTGTTTGA
CACTCAAACTTCCATTGTTTCGAACATTGCAGTGACGTCTAACATAAATA
GTTCAGATAAACTTTAGAAGGTTTATATCTTGTGGCTTTTACAATCAGTC
ACTACATAATCGATTTGTTGGAATGGTTAGAATGTTTTTAATGACGGTTA
TACGACGAACAAAT Run BLAST on NCBI transcript from alignment at scaffold_245:71506..75946+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054753 ID=TCONS_00054753|Name=TCONS_00054753|organism=Clytia hemisphaerica|type=transcript|length=4441bp|location=Sequence derived from alignment at scaffold_245:71506..75946+ (Clytia hemisphaerica)
TTCGTAATTCGCGTGCCTTGCATCTCAAGTATGGTAAGAAAGGGATTTTC
TTCTAGCGGGAAAAGACTCTCAGCTCATTGTCAACAGCTCAAACACGACT
TAACTAATCAGCAGgtgaaacaaaaacttttaaatgaagGATTTGTTAAA
GTGTTTCAATCAAACATGCCGAGCTGTTTACATATCTtactgtttttgtt
ttgattcttaaAGACCCTTTCTGTTTTGCAAATGCTGCCAAATTTAATTT
GCAATTTCTTATCACTAGCCGACATTAGCTTGATTATGCATTTGTAAAGT
ATCTATATAGCTCATTTCATCAATCCTAGGTCGATTATGTCATGAAAGGT
AGGGAGAAGCTTACTATGATACCATTGAAGTCTAACTTCATTCTTCTTTT
CCAGATATCCTAGTCTCATCAGACCCTCATCATTGATACTTTGGGATATG
AGATATGAACAATATGTAATGACGGTAGTTTTATTTTAGTTGGATGAATG
ATCTACTGGCAGGTAATGGGTCGGTAAGAACGGAGTAGGGAGGAGAAAAA
CGAATCAGTTTGACAAGAAAGATAGCAAAGAgttatttgtttacatttta
atgtaaaagaACAGGAGTTAATCATGCAGTACTTAAGCTTTCCGTTTGCT
CTTAATTAAGATCAATTCTTCTTGTTATATTTTTCGGTGATGACGTGATG
AAGTTCGAATGATTTATGATATCATGatagaagatttttttttttgcatt
agaTGCTATTCTGGTATTAATCCAACTGAATGATAATCATTTACAATTTT
CCTCCAAGTTACATAATAAGATCTTTTTTAGAGCATTATATTTTTGATAC
TGTATCTTTTAAGAAAGCTTAACACTTTATTAAGATCAGCAAGAAGTTTA
AAAAGGGTTTGGGTTTTCCTTTGTAAGCGGTTTATGGTTTTTCTCGTCCA
ACACAGTTGGAAGTATAGTAACCTCACGAAAGAGTTTTATCTGTAgtgtt
ttgaaaaactttggtgTGGCAATTGTGCGGGGGTGAAATACTTCGTAAGC
ATTGAAATCAGTTTAATTCGTTTTGATTAATAAACATACCGCTGAGTTTG
GAAATGAATACAGAGCCACTTCAAAATACTGTGACAGTCCAGACTTCGGT
TAGCCTTGTGTATCATTTAATCCACTTACTTCAGGCGCCTTTGCTACCCC
ATTGCTATGAAAATCTTGGACAGAAAGATCAAAAACGAAAGCCACAACTC
CCCAGTTCACAGTTGACTAATAATATAGAGAGTGGTAAAAACCACTGAAA
AGCTATTTTGGTTATTTGACAAGGGCTCACAAGCTACTGGAAAATTTTTG
CAGCGATTCTCTTATCTCGATTGAATTTCGTAACATTTTTGAATTAGCTA
ATTTCGTTATCCCGGCATTTAATTTTAAATGACTACTTTTACGCGAGAAA
TGTGAATTTTTCATGAAGGAAGGCTAGTAATTGCTTTGAAATGGTAATTG
TTTCGAATAGCAGCTGGGGTACGAAGTATGGGTGTTACAAAATTGGATAG
TATGTTGCGAAATACATTTGGAGGTTGAAAGGCGAGGGTCGAATGTTACT
TTTTTCTCTATAATTATTTCAACATTGGAGGATATTGACATCTTCTTGGT
AAAATTTCGATTAGCATTTCTGACTTTTAAGCGAGTAAATTTCCGTACAA
GGGGACGATGACATTGCACTGGTTTCCTGGTCATTTCTGACAGCGGAACA
CGTCAATGAAGCGAGGTATTGTTTCAAATCTATTGTCTCATTAATGATGT
AAGATAAAAGATCGTTTGAAAACAATAGTAGCATCATTTCTATTGTCTGT
TTAAATAAATTGGATTCTGTAATTAAGTGGTATGGTTACAATCTTCTTTC
TTGTTAAATGTCAGAGCATTTTCGGGAAGAGATCTAATCTAGACATGATT
CATAGAAACTGTTTACTGTGGGAATTTTGAAATGCTCTCTTTAGAATTTG
AATTTCGTTACAAAAATGATGAGCTTATTAATTGGTTCGATCTTTCATGA
AAACTGTTTTATAGGTGGTACAAGAAAAGTTGGCTTGGTTTTATTCTTTT
TCGTTTTCATCGAAAGAAGTCGTTACATTTGATGTTCTGctataatttat
ttattacGCAAAGATAGGAAACGTTTTATAAACGGGTTGTTGTTTCGTAA
GCAAAGAAGTATACATCGTCCGATGTCGACGACGAACATTGATCATTGAT
TACTATTTTATTGGACTGTTTTTTACCGGTGTTGtctcataaaaaatgac
gttgCGTCGAATCAGCCGTCATGAATCGCTCTTTTATTATAAAGTCTTTC
AGAATAAGAGAATGTATCGTTGAGTTCGGTTGACATTTTCAATGTTATAT
TGGTGTGAGTTTTTTTGGTTTAACAAAGTATGACATTTTGTTGAGTTCCA
TATGTTTTCTTTTGGAAGCTGAAGAATGTAGAAGCAAATGAAATACGAGT
ATTTTTTCCTGATCAGAATTTAAGTTGAAGGATTCCCTTTACTTTATGAT
AGAACCGTACCTCATGGAGTCTATAAAAAGCCTTCATTCGGGAAATATTA
TTGGGATTTTATTGACTTTGTTTCCCTTAAAGATCTCATTTCAAAAAGAA
AGCTCTCCCTTAGATACCGAACACCTTAGAGAGGGTTTGAAGTCCAATCA
ACATTTTTGTGGTTTTCTCCCCTTTTCTTTTTCCTCCAATCTTGAAATTT
TATATTGCATCCTTGGAAAGTAAACAAACCGATGCTTGAAAACTCTTGGA
ATTCATAGACAGTGATTTCTGACCTGAAGGATCTTGCTTTTGCTTTCATG
TTGTAAGTTATCTTAGAGTATTATCAATCACACTAAAATGCCAGTAAGGT
TATGTAGAGAGTGGTTGTCTCCTGCAGACAAGTGAACAAACGAGACTGAA
CAGAGAACATTGAAATTCTTCCATTTGCTTAGCTTAACCTTTAGGTGACT
TTTAAACCCAACTTAACAGTTTTGATCAGATTTTAATCCTTGTACTATAG
ACAGTATGATCAAAAATAAAGAGAAGAATACAATAGAGAGAATCGTTTTA
ATACTGTGGTGATCGTTTTAAATTGGCAAGTCATAATTTACGCCGGAGAC
TTCTTCAAATGTAAGTCCAGCTAATTTGATTAGTAATGAAATTACTTGAG
CATCCtatttcaaatcaaatcaacttttattcaatttccatcctcttttt
cttgttttagaTTCGTTGGCGGCAATTCGGATGTTGGTTTATTTGGTATA
TAGATGGTGGGCCTGATATTTAAATTCTTTCGTTAAGCCTGTGAAGTCCA
GTTGTTAAGTCTGACTTCTGTTCACTTGAGAGACACATCATCCAAATGTT
TGCtgctgatgatgatgatgatgatgatgaaagtttataaaaaaagaaaa
aagtttagtCCAATAATCAATAGATACCTTGTCTAAGAAAAGTTCTCTGC
AAAGAGAAACGCCTGTCAAAAATTACATGAGATTTAGCACGGAGCTTATC
AGTTCTTAAAGCCTGTTTTAAGCTGTCTTAGAGAAACAATGGTCTATGAA
ACAGAGGCTTGAACATTTTGTGTTGGTgtcaaattattaaaattttcatt
attgttTCTAGTTTTAGAGAATGGTTTCGGTTGAATAAGAGATGAAGCAC
TGGGTGCTTGGAGACACGATTCTATGACGCACAGTCTTCGTGAACACAGC
TCGCTGTTTTAGATCACAGCGATCATAGTGGgataatttttcactttttt
ttatttgagcccaaaattttaatttttttaaaaaatgatgattcATCTTG
CTATCGATTCGAGTTcggttgaattttttttttttttttgagaaaaatat
tgttttggaATATTTGAACAAAAACATATTGGTACATACGGGAAGTCGTT
GAAACTGTTAAATTCCCTTGTTTGACGGAAATTAGGGGTTACATTTAATA
CCAATCAATCGTGCTCACTGGCTCGTCCTATCATCATttcaaagagaaga
aaaaaattctttttggatGGCTCCTTTTGTTATGAAGTGTCTCTCTTGAC
AGGGTGTATCCTTTTTTTCATACGAATGGTATACTTAATAGATAGTATGT
TTATTTGAATAACATGAACTTTTATACTACGTATCCTGAACGGGGTTCTG
GAAGGTGTTCTGTTATATTATGATAACTGTAAACCCTTCActatattttt
tgttgttttttctaacAAAGTGTTTGACACTCAAACTTCCATTGTTTCGA
ACATTGCAGTGACGTCTAACATAAATAGTTCAGATAAACTTTAGAAGGTT
TATATCTTGTGGCTTTTACAATCAGTCACTACATAATCGATTTGTTGGAA
TGGTTAGAATGTTTTTAATGACGGTTATACGACGAACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054753-exon-scaffold_245-1491911889:71506..71538 | TCONS_00054753-exon-scaffold_245-1491911889:71506..71538 | Clytia hemisphaerica | exon |
| TCONS_00054753-exon-scaffold_245-1510915933:71506..71538 | TCONS_00054753-exon-scaffold_245-1510915933:71506..71538 | Clytia hemisphaerica | exon |
| TCONS_00054753-exon-scaffold_245-1575043694:71506..71538 | TCONS_00054753-exon-scaffold_245-1575043694:71506..71538 | Clytia hemisphaerica | exon |
| TCONS_00054753-exon-scaffold_245-1491911889:74766..75946 | TCONS_00054753-exon-scaffold_245-1491911889:74766..75946 | Clytia hemisphaerica | exon |
| TCONS_00054753-exon-scaffold_245-1510915933:74766..75946 | TCONS_00054753-exon-scaffold_245-1510915933:74766..75946 | Clytia hemisphaerica | exon |
| TCONS_00054753-exon-scaffold_245-1575043694:74766..75946 | TCONS_00054753-exon-scaffold_245-1575043694:74766..75946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:71506..75946 + |
Blast
The following BLAST results are available for this feature:
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