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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054759 ID=TCONS_00054759|Name=TCONS_00054759|organism=Clytia hemisphaerica|type=transcript|length=2668bpRun BLAST on NCBI protein sequence of TCONS_00054759-protein >TCONS_00054759-protein ID=TCONS_00054759-protein|Name=TCONS_00054759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=768bp MIIIYRYYLFMLVQVGIARLEIISPNTVRNDVTDETYNSVLLNPMVQELVRun BLAST on NCBI transcript from alignment at scaffold_245:128931..154924+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054759 ID=TCONS_00054759|Name=TCONS_00054759|organism=Clytia hemisphaerica|type=transcript|length=25994bp|location=Sequence derived from alignment at scaffold_245:128931..154924+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:128931..154924+ >TCONS_00054759 ID=TCONS_00054759|Name=TCONS_00054759|organism=Clytia hemisphaerica|type=CDS|length=36912bp|location=Sequence derived from alignment at scaffold_245:128931..154924+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054759 vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.670e-17 Identity = 78/316 (24.68%), Postives = 133/316 (42.09%), Query Frame = 2
Query: 1241 YCLVWDPSTPNTEYGSWTRKSGRLHDTNIERTICRYSKSGIFALGAAVPPPQVPPLFRFTISW--YCGLLFTCVWVILTLV-----KTNSTKMNVPDWLNTNQLCGLLVFCCIVLSGMHLELDPIPCSMLSFALYYFGLSVFVWHLLKAAQFTGTFDKFFRAERNIYTFYFFLGWGIPFFIAGMAGGAEFYPREKKQSCWLAMKGGSIIGETAPAYFLVVFIFYLYRKGLKRAKMQEDLYNYP--------KMFGRAVVDATTLVLFCLTWVFGLFCILHEADFAPQFFFCVFLSCTTIML----CLTAKQNRRSF 2131
YC D S+ G W+ L N+ ++CR + FA+ V P ++ + +S Y G + + ++ TLV + ST N ++ N +LV ++L LE PC +++ L+YF LS F W L++ K F +E + + +Y+ +GWG P I ++ +CWL++ G+I APA F++V + + R Q NY K+ +AV A L + +WVFG+ + + Q+ F S + + CL + R +F
Sbjct: 509 YCAFLDFSSGE---GVWSNHGCALTRGNLTYSVCRCTHLTNFAILMQVVPLELARGHQVALSSISYVGCSLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPGTTPCQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSKHRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGIL-IAVTRVISQISADNYKIHGDPSAFKLTAKAV--AVLLPILGTSWVFGVLAV-NGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAF 817 The following BLAST results are available for this feature:
BLAST of TCONS_00054759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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