TCONS_00054801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054801
Unique NameTCONS_00054801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054801 ID=TCONS_00054801|Name=TCONS_00054801|organism=Clytia hemisphaerica|type=transcript|length=609bp
tttcagtttaaaatcatttcaaaagCGACGATCAacacaaaatgttgaaa
tttatCTCAGTGGTTTTGTTGGTGTTGGTGGTTAAGTATGAAGCACTGCA
ATGCACGGGTGATTGTCAAAAACAACCAACTCCCCTCGATTGTAAAGGAG
GATCGATAGTCAAGCTACCCTGTGGGTTTTGTCAAGAGTGTGCGAAGACA
GAGGGTGAGACGTGTGGCTGTATTGGCTGCAAGAAAACGGCCAACTTTAT
CATCGATGAAAATACACCTCACAGTACGCTTGTGTTCGGTCGATGTGAAA
AAGGCCTCAAATGTCAAATCAAGAGGGGTATCAAAGGAAAATGTGTCAAG
TTGCAGTGAATCTACAAAGCAAACCATGGTTTTGTCAAcgaaatacaaaa
atgaaaaggatGATAGATTGCCtatatttttgatttcaaagaaCGAAAAT
AGAAACATATTCACGTTTGTATATATTAAATTTTTAACTGATAAGCTCTA
TTTTAAACTTCTTGACTTAAAGGTTTGGGTCGAGGATTGACATGTATATC
ATTTTATTGACTTTTGTTTGAAATACTTTTTGTTGAAATACTTAGTAAAC
AAATCCTCG
Run BLAST on NCBI

protein sequence of TCONS_00054801-protein

>TCONS_00054801-protein ID=TCONS_00054801-protein|Name=TCONS_00054801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MLKFISVVLLVLVVKYEALQCTGDCQKQPTPLDCKGGSIVKLPCGFCQEC
AKTEGETCGCIGCKKTANFIIDENTPHSTLVFGRCEKGLKCQIKRGIKGK
CVKLQ
Run BLAST on NCBI

transcript from alignment at scaffold_245:159745..163667-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054801 ID=TCONS_00054801|Name=TCONS_00054801|organism=Clytia hemisphaerica|type=transcript|length=3923bp|location=Sequence derived from alignment at scaffold_245:159745..163667- (Clytia hemisphaerica)
TTTCAGTTTAAAATCATTTCAAAAGCGACGATCAACACAAAATGTTGAAA
TTTATCTCAGTGGTTTTGTTGGTGTTGGTGGTTAAGTATGAAGCACTGCA
ATGCACGGGTGATTGTCAAAAACAACCAACTCCCCTCGATTGTAAAGGAG
GTTTGACAATCTTGTTTGTTTATAACATAGTTTGTTTTGCCGATTTTAAG
CCTTTTTTGTTTAACCCTGCGAGCATATCCTTTTGGCCAAAAAGCCAAAA
TAATATTTTTTGATAATTTTTGAAATATTTAATCAATTGACTTGCACTNT
TTTTGGTTAGCAGATTTTTTGCTAAGTTCGGAACGGTTTTGTGAGCCTGA
TTCGCATCCCCTATATCAAAACTTATCACAGGGGATGTGTGCAGCCTAAC
TTGCACTAAGCATAAATTGATATCTTTGATGAAAAATTCGGCATCATTGA
TGGCGTCATCGCCACCTGATTACCATTCTTTGAAATATATAACCTTTCGA
ATGTAGAACCCCTCTAACTTTTTGAACTGTAAGTTTTTTTGCTAAGATTT
TGTGGCTCCACGTGACATGTGTTTTTGAGGTACAGGATTGATTTTTTGCC
ACCTGTTGGTATAATGTATTTTACAGACGGGCCCAAAATTGCCCTTTTTG
CCTTAAAACCCCTAGGATACTGTACCTAGTGATTGGAAAATGCTATTGAC
AAGACATAAGCTTTCAAAATTTTTGCAAAATCGGAAGAGCAGATATGCTC
AAAGTCCGTATTTCGGGTAAAACATGAACCCGTAAAGACTTAAGATACCC
TTTAAGACCTTAGTACCCTTATGGGTCGCACATACCAATCACGAACCAAA
GACGAATTTGACAAAGAATAAAAGAAACAAAATAAACGTCTCCAGATTTG
GGTACCAAAAAAGGCCAAAACGATGACGTCCTTGTTGTCCGGATTCCAGT
ACCAAAAAAGGACCCAAATGATGACGTCCTCACCAAAATTGACAAAATTT
AATTAGGTTAATTTCAAGGCATTATTGTCAAGGTATCACATGCCAAATTT
GAAAGGAAACAGACAAGCCAATCACGAAATATAGGTGCCTGAAAAANTTT
TTTTCATTATTTTCTAATTTTTTTAAAGATTAACGATTATCTTTCCAACG
AGGTCTTACTTTTAATCATCTATTTTTCCTTCAACATCAATGTAACAAAA
TGTGAGGACTACCATTTTTTTGAAACAGATTTAGAAAAAATTCATCGATC
GTATCGTTGTAAAATTCACTCTTTGCGAACTTTACGTGCTCTAGTTATGA
TTTTACAAAGAAAAAATTTTAACAATATTAATTGAATGTTTAAAGTCTGT
CCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTTTTGATAGTC
CGATATAATTGCAAAAAATGTTTTTGCTTCTTTTAGAAAATCAAATGCGC
CATATTTGAATGTATTTTTTGTTGAAAAATTCGCGAGTTTTAGCGGTTTA
ATTTGCGATTGCAAAAATTGAGCTTTTTTTCTTTTTATGCTACAACGGTC
ATTTTTACACCAGTGGTAGTTNCCTACTCGTTACTTCTCGTTACCTACTC
GTTACTTCTCGTTGCCTACTCGTTACTTCTTGTTACTTCTTGTTACTTCT
CGTTACTTCTTGTTACTTCTTGTTCCTCGTTATAGTAACAACCGAACCCG
TCTGTGAAATACCAACCGCTCACGTGACTAAATCGAAATTTTGCACACTG
TCTTANACTTAGGTCAAGAAGATTGTTAAATTTCAAGGCAAACGGATAAG
TCGTTCGGAAGATATGGGACCCGAAATACCCCTTGGTAGCATTTTTCTGT
GAAACATCAAATCTCCAAATTTTTAATAAAAAAATTTTTCAACAAAAAAT
ACATTTAAATATAGCGCTTTTGATTCTCTAAAACAAGCAAAAAAAAATTC
CATAATTATATTTCACTATTAAAAGTTACAGGCATTCTTGTTTCCACTGC
CAATTATATCTGGACAGACTTTATAGAAGAGGGCATTTTGTAAAATCGCT
AGACTGTTTTGTTAGAAGCACTTGTTATACATATTTGGAAAGCTAAGGGG
TAGGGGAATCGAAATTACTATGTTTCCAATTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTGAGACCGTCATATTTGTCCGAAAATCACACCAAAGT
GTCCGAAAAAAAATTGGAAACATAGTAATTTCGATTCCCCTACCCCTTAG
CTTTCCAGAAATGTATAACAAGTGCTTCTACAAAACAGTCAAGCGATTCC
AAAAAATCGAACAAAATTCCCCCTACTATTAGTATGAAATCCGTCGATCT
ATTCCATCATTTCTCGTTCATCGATTTTTAGGATCGATAGTCAAGCTACC
CTGTGGGTTTTGTCAAGAGTGTGCGAAGACAGAGGGTGAGACGTGTGGCT
GTATTGGCTGCAAGAAAACGGCCAACTTTATCATCGATGAAAATACACCT
CACAGTACGCTTGTGTTCGGTCGATGTGAAAAAGGCCTCAAATGTCAAAT
CAAGAGGGGTATCAAAGGAAAATGTGGTATGTATTTGAAATGCCAGGAAA
CTTGGTGTTTTGTTTTAGTCTCCATTTTTAAGAGATGATGACATACTTGC
CACGATAGGGCTGTTTCTCTCAAGTAGAAAAGAAAGTATTCAAGTTTTGC
ATAAGCATAACACTTTTGAGCATATCGAGACTAATATCAGGCTTTACACA
AAATTGATTCTGGCTTTTGATTTCTTTCTCAGTCAACTCTCTCTCTAATT
TGAACCTCCATATTTCGATTATTTCTGTAATTCGAATTCCTCTCAGCTTG
AAAGTAGTATAAAAATACTCTCTATAATTCGAATATTTCTCTAGTTGAAG
ATCGAATAAGAGAGAGTAAACTGTATATCCCCACTATTGATAATTTCTTT
CTTTTATAGTCAAGTTGCAGTGAATCTACAAAGCAAACCATGGTTTTGTC
AACGAAATACAAAAATGAAAAGGATGATAGATTGCCTATATTTTTGATTT
CAAAGAACGAAAATAGAAACATATTCACGTTTGTATATATTAAATTTTTA
ACTGATAAGCTCTATTTTAAACTTCTTGACTTAAAGGTTTGGGTCGAGGA
TTGACATGTATATCATTTTATTGACTTTTGTTTGAAATACTTTTTGTTGA
AATACTTAGTAAACAAATCCTCG

Coding sequence (CDS) from alignment at scaffold_245:159745..163667-

>TCONS_00054801 ID=TCONS_00054801|Name=TCONS_00054801|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_245:159745..163667- (Clytia hemisphaerica)
TCAAGTTGCAGTGAGATCGATAGTCAAGCTACCCTGTGGGTTTTGTCAAG
AGTGTGCGAAGACAGAGGGTGAGACGTGTGGCTGTATTGGCTGCAAGAAA
ACGGCCAACTTTATCATCGATGAAAATACACCTCACAGTACGCTTGTGTT
CGGTCGATGTGAAAAAGGCCTCAAATGTCAAATCAAGAGGGGTATCAAAG
GAAAATGTGATGTTGAAATTTATCTCAGTGGTTTTGTTGGTGTTGGTGGT
TAAGTATGAAGCACTGCAATGCACGGGTGATTGTCAAAAACAACCAACTC
CCCTCGATTGTAAAGGAGTCAAGTTGCAGTGAGATCGATAGTCAAGCTAC
CCTGTGGGTTTTGTCAAGAGTGTGCGAAGACAGAGGGTGAGACGTGTGGC
TGTATTGGCTGCAAGAAAACGGCCAACTTTATCATCGATGAAAATACACC
TCACAGTACGCTTGTGTTCGGTCGATGTGAAAAAGGCCTCAAATGTCAAA
TCAAGAGGGGTATCAAAGGAAAATGTGATGTTGAAATTTATCTCAGTGGT
TTTGTTGGTGTTGGTGGTTAAGTATGAAGCACTGCAATGCACGGGTGATT
GTCAAAAACAACCAACTCCCCTCGATTGTAAAGGAGTCAAGTTGCAGTGA
GATCGATAGTCAAGCTACCCTGTGGGTTTTGTCAAGAGTGTGCGAAGACA
GAGGGTGAGACGTGTGGCTGTATTGGCTGCAAGAAAACGGCCAACTTTAT
CATCGATGAAAATACACCTCACAGTACGCTTGTGTTCGGTCGATGTGAAA
AAGGCCTCAAATGTCAAATCAAGAGGGGTATCAAAGGAAAATGTGATGTT
GAAATTTATCTCAGTGGTTTTGTTGGTGTTGGTGGTTAAGTATGAAGCAC
TGCAATGCACGGGTGATTGTCAAAAACAACCAACTCCCCTCGATTGTAAA
GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034522XLOC_034522Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054801-proteinTCONS_00054801-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054801-exon-scaffold_245-1575043694:163518..163667TCONS_00054801-exon-scaffold_245-1575043694:163518..163667Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1575043694:160392..160586TCONS_00054801-exon-scaffold_245-1575043694:160392..160586Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1575043694:159745..160008TCONS_00054801-exon-scaffold_245-1575043694:159745..160008Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1510915933:163518..163667TCONS_00054801-exon-scaffold_245-1510915933:163518..163667Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1510915933:160392..160586TCONS_00054801-exon-scaffold_245-1510915933:160392..160586Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1510915933:159745..160008TCONS_00054801-exon-scaffold_245-1510915933:159745..160008Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1491911889:163518..163667TCONS_00054801-exon-scaffold_245-1491911889:163518..163667Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1491911889:160392..160586TCONS_00054801-exon-scaffold_245-1491911889:160392..160586Clytia hemisphaericaexon
TCONS_00054801-exon-scaffold_245-1491911889:159745..160008TCONS_00054801-exon-scaffold_245-1491911889:159745..160008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:159745..163667 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266083	0.259473	0.200849	0	0.119609	0	1.14031	0.960787	4.33498	2.49963	4.22339	2.3628	18.5222	17.2752	82.0423	99.9885	5.52635	4.98188	1.50855	1.38126	0.257264	0.376453	0.20339	0.0924557	0.285682	0.254964	1.94588	1.03835	0	0.100299
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000867IGFBP-like
IPR009030Growth_fac_rcpt_
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0001558regulation of cell growth
Vocabulary: Molecular Function
TermDefinition
GO:0005520insulin-like growth factor binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001558 regulation of cell growth
cellular_component GO:0005576 extracellular region
molecular_function GO:0005520 insulin-like growth factor binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top