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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054802 ID=TCONS_00054802|Name=TCONS_00054802|organism=Clytia hemisphaerica|type=transcript|length=2981bpRun BLAST on NCBI protein sequence of TCONS_00054802-protein >TCONS_00054802-protein ID=TCONS_00054802-protein|Name=TCONS_00054802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp MDENWDAEIKGTAPVNNFQNLSISQPKPNNSSKYFDDDYNNDTRDDENSFRun BLAST on NCBI transcript from alignment at scaffold_245:163886..172686- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054802 ID=TCONS_00054802|Name=TCONS_00054802|organism=Clytia hemisphaerica|type=transcript|length=8801bp|location=Sequence derived from alignment at scaffold_245:163886..172686- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:163886..172686- >TCONS_00054802 ID=TCONS_00054802|Name=TCONS_00054802|organism=Clytia hemisphaerica|type=CDS|length=36096bp|location=Sequence derived from alignment at scaffold_245:163886..172686- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054802 vs. Swiss-Prot (Human)
Match: DDX43 (Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43 PE=2 SV=2) HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0 Identity = 269/536 (50.19%), Postives = 377/536 (70.34%), Query Frame = 1
Query: 562 DTVVEITGTEEQKQKAKQIIEDLT------------IPAGDYQRWGEREARKNNVQTNDSAPAPINWGELKRQNDEFQAAKFADLVQIKKNFYRENKKIATMDPLDVAAIRAKKNNISAIDLSD-LNRPIPNPVLSFEDAFTDFPEILETIYDNRFTEPSPVQSQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHIDEQITPRKERSGPTCLVLSPTRELAQQIEMEVKKYSYRGIRSVCIYGGGDRREQIQMVKRGVEIIIGTPGRLNDLLMNNFYSVRDVSYLVLDEADRMLDMGFEPEIKKILMDIRPDRQTIMTSATWPPEVQRMADQYLKNPLRVNVGSLDLQACHSVTQLIEFIESENKQARLHEFVASMGPDDKLIVFVGRKVTADDISSNFAMYGERDFGIQSIHGNRDQADREQALQDMKTGAARVLIATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGVALTFVTREDWMHVGKLIPILEEAGQEIPEELIEMSERARKNRERRLDEKNRER 2130
+++V+I G++ + KAK +I++ I G+ + NNV D I+W +++ + ++Q K+ADL IKKNFY+E+ + M ++ + R + NI+ DL D RPIPNP +F+DAF +PE++E I F +P+P+QSQAWP++L G+D IG+AQTGTGKTL +L+P FIH+ Q + + +R+ P LVL+PTRELA Q+E E KYSY+G+RSVC+YGGG+R EQI+ +K+GV+III TPGRLNDL M+NF ++++++YLVLDEAD+MLDMGFEP+I KIL+D+RPDRQT+MTSATWP V R+A YLK P+ V VG+LDL A SV Q I E K + + F+ SM DK+IVFV RK AD +SS+ + + ++S+HG+R+Q DRE+AL++ KTG R+LIATD+ASRGLD+ D+THV N+DFPR+IE+YVHRIGRTGRAGR+GV++T +TR DW +LI ILE A Q IPEEL+ M+ER + ++++R E+ ER
Sbjct: 109 ESLVKIFGSKAMQTKAKAVIDNFVKKLEENYNSECGIDTAFQPSVGKDGSTDNNVVAGDRPL--IDWDQIREEGLKWQKTKWADLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLIL---GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERFKAHQQKREMERKMER 639 The following BLAST results are available for this feature:
BLAST of TCONS_00054802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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