|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054806 ID=TCONS_00054806|Name=TCONS_00054806|organism=Clytia hemisphaerica|type=transcript|length=1553bpRun BLAST on NCBI protein sequence of TCONS_00054806-protein >TCONS_00054806-protein ID=TCONS_00054806-protein|Name=TCONS_00054806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MPQFFMKSTQKGKKRKPVTKPSIKPKVKVHDKVDFDDDDIASSGKEESDYRun BLAST on NCBI transcript from alignment at scaffold_245:235900..250226- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054806 ID=TCONS_00054806|Name=TCONS_00054806|organism=Clytia hemisphaerica|type=transcript|length=14327bp|location=Sequence derived from alignment at scaffold_245:235900..250226- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:235900..250226- >TCONS_00054806 ID=TCONS_00054806|Name=TCONS_00054806|organism=Clytia hemisphaerica|type=CDS|length=19530bp|location=Sequence derived from alignment at scaffold_245:235900..250226- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054806 vs. Swiss-Prot (Human)
Match: U3IP2 (U3 small nucleolar RNA-interacting protein 2 OS=Homo sapiens GN=RRP9 PE=1 SV=1) HSP 1 Score: 381.333 bits (978), Expect = 2.511e-126 Identity = 187/400 (46.75%), Postives = 279/400 (69.75%), Query Frame = 3
Query: 246 TAQSKRLRLAKEYIKQLENEEIDTKEADEIDKDAIAHRLQQDVLEDAGQLQKFIADSI-TPDQENIIHMRGHKFSVTCVVISSDNKFVFSASKDGSIIKWDITTHKKLLKIDGVXXXXXXXXXXXXXXIYTIAISSDVKFLATGGQDMLINIWNGADLSWQHTFRGHRNIVTSLAFQKKQHQLFSASHDKTIKVWNLNEMAYVETLYGHEDAVLGIDSLSRDHAVSCGGRDRSVRLWKIADESQLIFHSSNISSSFDCVTMLNEDYFLAGGDDGSLSIFNVRKKKPVTLRTNAH-VKGENSPPGGCDESWVSSVASLPYTDLVATAGSCDGCIKLWRCEKSFKSLMPVHTIKVNGFVNGLKFSTGGEYLIAAIGQEHRLGRWWQMRNVKNTVCIIPLKNV 1439
TAQ K+LRLAK Y++QL +E + EA ++D +A RL++DVLE G+LQK +A I P +I +RGH+ S+TC+V++ D+ +FSA+KD SIIKW + + +KL I K ++ GH + +AISSD K+LA+G + LI IW +TF GHR+ V+ LAF++ HQL+S SHD+++KVWN+ E +YVETL+GH+DAV +D+LSR+ V+ GGRD +VR+WKI +ESQL+F+ S DC+ ++NE++ ++G DDGS++++ + KK+P+ L+ AH ++GE PG W+SSVA+L TDLVAT GS C++LW+C + F+ L + I + GF+N LKFS+ G++L+A +GQEHRLGRWW+++ +N+VCIIPL+ V
Sbjct: 74 TAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQ--GSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGE---PGLEQPFWISSVAALLNTDLVAT-GSHSSCVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRV 467 The following BLAST results are available for this feature:
BLAST of TCONS_00054806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.