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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054808 ID=TCONS_00054808|Name=TCONS_00054808|organism=Clytia hemisphaerica|type=transcript|length=1423bp
ATTATCGTAATCAAGATATACCTGTTTTCGCTAACCCTTCGATAGAAACC
ACCCCTTCAATcaaacgaacgaacgacaaAAACAACCCCCCATCGGCAGC
TACGTATGAGCCAAACTCTCGCCCATTCAAATGTAATCGCTTGAAAATCA
TATTGACTGTCTGAGTAACCAAGTCAATAGTCGAACAGTATCGAGGCTAT
CACCAAAATACCACGTGGTTTACTCTTCCTTTGATTGGCTTATAGTTAGC
AGGTCGAACTCTAGCGCCAAAACGTAGCGTAGGCCTTTCATAGGCAAGCT
AAGCTCAGAAGATTCACTGAAGCAAGGTTGACGTCGCTGATTGTTTTACT
TTCAACTTTAACTACTACTTTTCTTCACATATCTTCATCAGAAATGGGCA
AAAAAGATCCTAACAAGCCAAAAGGAGCCAAGAGTGCATATACATACTTC
ACAGAGACAATCCGTGAGGAAAGAAAGGCAAATGGAGAACCTTATGATAT
CGCAACAGTCTCAAAGGAAGCATCAGAGCAATGGAAAACTATGGATGAAG
ACGATAGAGAACCTTATGTAAAACAAgcagaaaaagataaaaaacgatac
caaaaagaaatggaaagttACATCCCACCAAGTGACAGTGATAGTGACAG
TGATGCtccaaaaaagaagaagaaaaagaaggatCCAAATGCTCCTAAAA
GAAATCAGTCTGCCTACTTCCTGTTTTCGAATAAAAACCGTGAGAAGATC
AAAGGAGAACTTGGTGAAGGCTGCAAAATTACAGAGATTGCATCTGCACT
CGGTGCAAAATGGAGGGGAATGAATGACAAAGATAAAGCACCATATGCTG
AATTGGCGGTGAAAGATAAGGAACGTTATCAAAAAGAAATGGCAGAATAT
AATGGGCGTTAGTTATTTTTGAACCACTGTCATGTGCCAAAATATTAATC
CAGGCCTGATACAGGTCGCCACCAACTGGACTCATTTTGTAaataaagat
aattttttaactcACAGGTAGTCTAttgttaaaattattttatgttCATC
GAAATTCAGGAATAATCTCCTGTCATTCTGATATAAACGGATAAACAACT
ATTGTTTATATTTTACTTGAAGGGGAGGGATGAGCCTTGTGATTTTTCTT
GTGCCAAAAACAAGAAATACCAACTTGTATAAGTTGAAAGGTTTCAAAAT
ATTGTCgcaaaaatattacaaatattCACTGTATATTTATTGtatatttg
ttttcatttatttctgGAATGTTTTAAAGAACAAGAAGTTAGTAAAATTG
TATGAATCAttcattatttaaaaatttttaatatacATTGTATGACTGAA
AAATGACAATAATTCTACCTTGTCAGTctgaagtgattttttttttgatt
tataatGTCGTTGCTGACTAAAT Run BLAST on NCBI protein sequence of TCONS_00054808-protein >TCONS_00054808-protein ID=TCONS_00054808-protein|Name=TCONS_00054808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MGKKDPNKPKGAKSAYTYFTETIREERKANGEPYDIATVSKEASEQWKTM
DEDDREPYVKQAEKDKKRYQKEMESYIPPSDSDSDSDAPKKKKKKKDPNA
PKRNQSAYFLFSNKNREKIKGELGEGCKITEIASALGAKWRGMNDKDKAP
YAELAVKDKERYQKEMAEYNGR Run BLAST on NCBI transcript from alignment at scaffold_245:339995..342463- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054808 ID=TCONS_00054808|Name=TCONS_00054808|organism=Clytia hemisphaerica|type=transcript|length=2469bp|location=Sequence derived from alignment at scaffold_245:339995..342463- (Clytia hemisphaerica)
ATTATCGTAATCAAGATATACCTGTTTTCGCTAACCCTTCGATAGAAACC
ACCCCTTCAATCAAACGAACGAACGACAAAAACAACCCCCCATCGGCAGC
TACGTATGAGCCAAACTCTCGCCCATTCAAATGTAATCGCTTGAAAATCA
TATTGACTGTCTGAGTAACCAAGTCAATAGTCGAACAGTATCGAGGCTAT
CACCAAAATACCACGTGGTTTACTCTTCCTTTGATTGGCTTATAGTTAGC
AGGTCGAACTCTAGCGCCAAAACGTAGCGTAGGCCTTTCATAGGCAAGCT
AAGCTCAGAAGATTCACTGAAGCAAGGTTGACGTCGCTGATTGTTTTACT
TTCAACTTTAACTACTACTTTTCTTCACATATCTTCATCAGAAATGGGCA
AAAAAGATCCTAACAAGCCAAAAGGAGCCAAGAGTGCATATACATACTTC
ACAGAGACAATCCGTGAGGAAAGAAAGGCAAATGGAGAACCTTATGATAT
CGCAACAGTCTCAAAGGAAGCATCAGAGCAATGGAAAACTATGGATGAAG
ACGATAGAGAACCTTATGTAAAACAAGCAGAAAAAGATAAAAAACGATAC
CAAAAAGAAATGGAAAGTTACATCCCACCAAGTGACAGTGATAGTGACAG
TGATGCTCCAAAAAAGAAGAAGAAAAAGAAGGATCCAAATGCTCCTAAAA
GAAATCAGTAAGTTCAACTGACTTCCTGTTTCTCTAATCAGATTTACTTT
CTCAAACTGCACTTTGAGCTCCTTATCTTTGATACTTTGACACAGTACAT
ATTCCATAATGTCAAAGGTTTGGGGGGGGGGGACTAAACCATACAAGTTT
ATTGATAACCCTTTTTGTTGTACCCTATCAGAAATTTAGACCATCAAGTT
GTTCCCTATTTTTTACTCCCCAATCTTAATGGGGTTTACATTCCCAACAT
CTCATCTGGAAAGAAGGAGGACCCTGCCGACGCACCAGACTGTCCAGTGT
ATTTGTCCGGTGGCAAAAAGTATCCTTCTGTACACCGGACGCATTAAGTC
TGGTGTCAGTCTGGTGTTGCATACAGGGAATTTTGGACGCCAGACATTTA
TGAAACAAAAAATTAAGAAACACCGGACGCACCGGACTGGTCATGTCTGG
TGTTTTGATTGTCCGGTGGAAAAAACATCCTTCTCCGACACCGGACATCC
GACTTCCTTAAGTCCGGTGTATAGAGATTGTCCGGTGGTAAAAAAAGTTC
TCATTTTACACTGGACTTTGGCGTGTCCGGTGTTCGTTAAGCCTGGTGCG
TCATCAGGGTCTTAAAGAAGGTTAAACCATACACATCAGATCCAGATGTT
TTTAATTGACTATCTAAATCTTACCTCTTACCAGGCTGCATCATTTGAAA
ATTCCAGGTGTGTGGTCAATCACACTCCTTAAGCCTTAATTTTAATTTTA
GTAATTTAGGTGTGCGATAAGGAGTGCTAATGCACAAATTTCAGTTGTGA
AACTAACTTAATGGGGTGTGATTGATCGCACTCCTCAGACATTTTAGGTG
TGTGTGGAGGTGTGCGCGTGCTAATGGTGCAGCCTGCTTGTGTAATGAGG
TCATCAAAAGATTGTTCTATTCAGCTGCATCATATTTTCTGTGCAGAGAC
ATGGGGAAAACACCTATTGCAACACGAACAGAGCAATCTTTTGATAACCC
CCTGATCTGTTTAAAGTCGGTCTCTGTTCAACAAAGTGATGCTTTCTTTT
CAGGTCTGCCTACTTCCTGTTTTCGAATAAAAACCGTGAGAAGATCAAAG
GAGAACTTGGTGAAGGCTGCAAAATTACAGAGATTGCATCTGCACTCGGT
GCAAAATGGAGGGGAATGAATGACAAAGATAAAGCACCATATGCTGAATT
GGCGGTGAAAGATAAGGAACGTTATCAAAAAGAAATGGCAGAATATAATG
GGCGTTAGTTATTTTTGAACCACTGTCATGTGCCAAAATATTAATCCAGG
CCTGATACAGGTCGCCACCAACTGGACTCATTTTGTAAATAAAGATAATT
TTTTAACTCACAGGTAGTCTATTGTTAAAATTATTTTATGTTCATCGAAA
TTCAGGAATAATCTCCTGTCATTCTGATATAAACGGATAAACAACTATTG
TTTATATTTTACTTGAAGGGGAGGGATGAGCCTTGTGATTTTTCTTGTGC
CAAAAACAAGAAATACCAACTTGTATAAGTTGAAAGGTTTCAAAATATTG
TCGCAAAAATATTACAAATATTCACTGTATATTTATTGTATATTTGTTTT
CATTTATTTCTGGAATGTTTTAAAGAACAAGAAGTTAGTAAAATTGTATG
AATCATTCATTATTTAAAAATTTTTAATATACATTGTATGACTGAAAAAT
GACAATAATTCTACCTTGTCAGTCTGAAGTGATTTTTTTTTTGATTTATA
ATGTCGTTGCTGACTAAAT Coding sequence (CDS) from alignment at scaffold_245:339995..342463- >TCONS_00054808 ID=TCONS_00054808|Name=TCONS_00054808|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_245:339995..342463- (Clytia hemisphaerica)
GTCTGCCTACTTCCTGTTTTCGAATAAAAACCGTGAGAAGATCAAAGGAG
AACTTGGTGAAGGCTGCAAAATTACAGAGATTGCATCTGCACTCGGTGCA
AAATGGAGGGGAATGAATGACAAAGATAAAGCACCATATGCTGAATTGGC
GGTGAAAGATAAGGAACGTTATCAAAAAGAAATGGCAGAATATAATGGGC
GTTAGATGGGCAAAAAAGATCCTAACAAGCCAAAAGGAGCCAAGAGTGCA
TATACATACTTCACAGAGACAATCCGTGAGGAAAGAAAGGCAAATGGAGA
ACCTTATGATATCGCAACAGTCTCAAAGGAAGCATCAGAGCAATGGAAAA
CTATGGATGAAGACGATAGAGAACCTTATGTAAAACAAGCAGAAAAAGAT
AAAAAACGATACCAAAAAGAAATGGAAAGTTACATCCCACCAAGTGACAG
TGATAGTGACAGTGATGCTCCAAAAAAGAAGAAGAAAAAGAAGGATCCAA
ATGCTCCTAAAAGAAATCAGTCTGCCTACTTCCTGTTTTCGAATAAAAAC
CGTGAGAAGATCAAAGGAGAACTTGGTGAAGGCTGCAAAATTACAGAGAT
TGCATCTGCACTCGGTGCAAAATGGAGGGGAATGAATGACAAAGATAAAG
CACCATATGCTGAATTGGCGGTGAAAGATAAGGAACGTTATCAAAAAGAA
ATGGCAGAATATAATGGGCGTTAGATGGGCAAAAAAGATCCTAACAAGCC
AAAAGGAGCCAAGAGTGCATATACATACTTCACAGAGACAATCCGTGAGG
AAAGAAAGGCAAATGGAGAACCTTATGATATCGCAACAGTCTCAAAGGAA
GCATCAGAGCAATGGAAAACTATGGATGAAGACGATAGAGAACCTTATGT
AAAACAAGCAGAAAAAGATAAAAAACGATACCAAAAAGAAATGGAAAGTT
ACATCCCACCAAGTGACAGTGATAGTGACAGTGATGCTCCAAAAAAGAAG
AAGAAAAAGAAGGATCCAAATGCTCCTAAAAGAAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054808-exon-scaffold_245-1575043694:341757..342463 | TCONS_00054808-exon-scaffold_245-1575043694:341757..342463 | Clytia hemisphaerica | exon |
| TCONS_00054808-exon-scaffold_245-1575043694:339995..340710 | TCONS_00054808-exon-scaffold_245-1575043694:339995..340710 | Clytia hemisphaerica | exon |
| TCONS_00054808-exon-scaffold_245-1510915933:341757..342463 | TCONS_00054808-exon-scaffold_245-1510915933:341757..342463 | Clytia hemisphaerica | exon |
| TCONS_00054808-exon-scaffold_245-1510915933:339995..340710 | TCONS_00054808-exon-scaffold_245-1510915933:339995..340710 | Clytia hemisphaerica | exon |
| TCONS_00054808-exon-scaffold_245-1491911889:341757..342463 | TCONS_00054808-exon-scaffold_245-1491911889:341757..342463 | Clytia hemisphaerica | exon |
| TCONS_00054808-exon-scaffold_245-1491911889:339995..340710 | TCONS_00054808-exon-scaffold_245-1491911889:339995..340710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:339995..342463 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009071 | HMG_box_dom |
Blast
BLAST of TCONS_00054808 vs. Swiss-Prot (Human)
Match: HMGB2 (High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 2.068e-25 Identity = 75/174 (43.10%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 394 MGKKDPNKPKGAKSAYTYFTETIREE--RKANGEPYDIATVSKEASEQWKTMDEDDREPYVKQAEKDKKRYQKEMESYIXXXXXXXXXXXXXXXXXXXXXXXXXRNQSAYFLFSNKNREKIKGELGEGCKITEIASALGAKWRGMNDKDKAPYAELAVKDKERYQKEMAEYNGR 909
MGK DPNKP+G S+Y +F +T REE +K + A SK+ SE+WKTM ++ + A+ DK RY +EM++Y+ KK KKKDPNAPKR SA+FLF +++R KIK E G I + A LG W + KDK PY + A K KE+Y+K++A Y +
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV--------PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEH-PGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAK 165
The following BLAST results are available for this feature:
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