TCONS_00054811 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054811
Unique Name	TCONS_00054811
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2978

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_245:357886..366679-

transcript sequence

>TCONS_00054811 ID=TCONS_00054811|Name=TCONS_00054811|organism=Clytia hemisphaerica|type=transcript|length=2978bp
tggcaatgcccaaaatgtgaaggagccagatttttaaggaaaattttttt
gggcaaatttgggccaaaaacagcttaaaaggttttttgggcctgaatgg
tttagtgattttcgtatttggaggaaattcctttttaccattttacatta
ttcaacacacaagctttatttttccattctgaatttttgtacaattattg
tcacttttttcttattttcatctgatgttaatcattaggtaggtccattc
agcatgttgcttgttttgtaTGGATTCATTAGATGTTATGACtgtgtatt
ttgttttgtagGATGAACATATTCGCAAATCAAGGTTCAATGTCGATGGA
ATTTATCAATcgaagaaaaaaacgaaatcaaGTTTTCCGGAATTTGTTAA
TTATTGCTCTCCTTCAGTTTATTCTAGAAAAGAGCTACAGGAATATGGTC
TTCAAGACTCCGTAATTAATCTGAGTGGAGACAGTGCTTTGGATTTTACA
TTTGATGCAAAAAAGTATTTCAGCTTGCAAGTTGCAATTTCTGGCAAATT
GGCTTTATGTTGTGGATTCCAAATAGTCATTAatgaaaaggttgaaattg
GGCTGAATGAAATCAAAAGtgCATTTATGAAGAGCAATGATATCGACAAA
TCGTTGGTACCAGAAAGGTGGATAGAGAACCATTTCAAATGGATTGTATG
GAAATTAGCCGCTTACGAACGACGCTTTCCTGGCCAGTTTGCTAACAAAT
GCTTGACACCTTTTATTGTGATGGAGCAACTCAGATATCGCTACGATAAA
GAGCTTGAAAAAGCAGAACGGTCATGCTTGAAGAAGATTTATGAACGCGA
TGACATTTCAACTCGTAGGATGATTCTCTTTGTTAGTGATATATTGCATG
CTGTTTCAAACAATGACCAAAAGTGCAAAaCTGTGATCAAACTATCAGAT
GGTTGGTATGAGATCAAGGCTGGTCTAGATCAACCTTTGAGTGCATTCTT
GGACCACAAGAAAATTGCCATCGGAACAAAACTCTGTGTGTACGGTGCTG
AATTGATCGGATCCACGCAAGCCTGTCCTCCTTTACAGGCACCTGAAGAT
TTGATGTTGATGTTATCAGCCAATTCCACACGAAGAGCATCATGGGATAC
TAAGCTTGGATTTCAGCCAATCAAACAAGCCTTTGCTGTCCCTTTGACGT
CGCTATATTCGGACGGGGGTTCTGTTGGTTGTGTCAATATCACTATTCTT
CGAAAATACCCTACTCAATGGATGCAGAAAGAGGGCGGACGTTGCATCTT
CCGAAACCTCCAACAAGAAGAGGAGGCGAAGAAGAAATacgaagaacaaa
aacaaaagaaaatggaaaCACTCTACGCATCCATTCAAAAAGAATTCGAA
GAAACTACCAATAAAGGAACGAAACGTAAAAGACGAAGTTTGTCAATGAA
AGAAATCGGTGAACTAAAAGACGGACGGGACATTTATAATGCCATACAAA
ATTCTATTGATCCATCCACTGTCGAGTGTTATTTGAGCGACTCCCAGAAA
GAAGCAGTGTTTAAacacaaacaaaagaaacaaacacTGGAACAAGATAA
ATTGAGACGAACATTCCAAAACCAATGGCAAAATATTGTCGAGGAAGAGT
TTCCAGATCGATCAGTGGTTCACCTACAAAGATATCGTATTTGTGAATGC
CCTACCCTCAACTCCAAAAGCAGACCATTCAAAGACGCTATCCTTACTGT
ATGGAAACCGACCGAAGACATCAACGAGAATTTCAAAGAAGGAGTTAACT
TAAAACTCTTCAACTTGAACACCTCTGCTTCAAGatacaAGCAAACTAGT
TGCAATTTTCAACTTTCCACGACCAACACGACCAAATATCGACTAATTGA
AGATGATCTGTGCGCTGAGAACATTGATTACATTCCACGCCAGGCGACTC
CGATAGATGAATTGTACACAAAATCACATGTACCTTGTAATGAAATTGAC
GTCGTGGCTTATGTTCTTTCTGTGGAACGTCAAAAAAGTACTGAAGAAGT
CATGTATCTCTATGATGGCGGAGAGAGGTTTCTTGCTGTAAAAGTCTGGA
ATAACCCGCAgAATGTGAAGAACAAGTTGGAAGGTTGTGTCATTGCTGCA
ACCAATTTGAGTTGGCAAAAGTTCGCAACACCTTCTCGAAATCGTATCAT
CCATGTTCAGTTCACTGATTTTTCGAATTTCTCGAAGAATCCCAAAGCTG
AGCATCTTCGAAAAGCAATGAACAAATATCAAAGCTCCTTGACGCAGAGG
GCTATACAAGTTGCCAGAAGTAACCTGCAACAACAATTACAAACGAACAG
TTCGATCAAAAAATTACCTCCTATTTCCAGCATTGAAACCACCAATAACA
ATACCATAACGGTGAAGAAAACAATATCATCGGATTCAAAACGAGAACAA
AGTTTTTGCGACGATCTCCCATCAGAAAAACTACTTTCCCGGCAAAAACT
TCAAATGAAAAAACGGCTATCTTTGGACCGTTACCACAACCCGCCGGGGT
TGAGCCCTCTACAGACTCGAGAAAATGGAGTTTTAAAGTCTCAATTTAAA
CCCCCTTCTACATTGTcctaagaaaaatgaaatgtttaTATTAGATAGAA
GATTGCATGTTAAATTACGTTAATACTGTACATATTGATATACTGTtaat
aaaaaggaaaatttttattttgagagagtagattttttatttatttagat
tattttttaatttagcCTATTATTTAGCCAGCCAACCCCTCCCTGCTTGT
CTCAACTCAAACCAGTACACTTTGAAATcgtattttcttgattttgatcG
GTTTGTTCCCAACCCTTGCCCTTTCCAAACCCCTTGACACTTTTAACTCT
TCCATCTATCTTTGTGTTTTTTAGATAGTATAAAAcaatgtaaatttatt
ttgtaaggatttgaaaagcgaaaattga

Run BLAST on NCBI

transcript from alignment at scaffold_245:357886..366679-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054811 ID=TCONS_00054811|Name=TCONS_00054811|organism=Clytia hemisphaerica|type=transcript|length=8794bp|location=Sequence derived from alignment at scaffold_245:357886..366679- (Clytia hemisphaerica)
TGGCAATGCCCAAAATGTGAAGGAGCCAGATTTTTAAGGAAAATTTTTTT
GGGCAAATTTGGGCCAAAAACAGCTTAAAAGGTTTTTTGGGCCTGAATGG
TTTAGTGATTTTCGTATTTGGAGGAAATTCCTTTTTACCATTTTACATTA
TTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTATTG
TCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTC
AGCATGTTGCTTGTTTTGTATGGATTCATTAGATGTTATGACTGTGTATT
TTGTTTTGTAGGATGAACATATTCGCAAATCAAGGTTCAATGTCGATGGA
ATTTATCAATCGAAGAAAAAAACGAAATCAAGTTTTCCGGAATTTGTTAA
TTATTGCTCTCCTTCAGTTTATTCTAGAAAAGAGGTAACACTTTATATCT
AACAAATAAAACAAAACTTAATCAGAATAAGCTCATCTTCTTGATTTCGA
CATTCAAAATACAAAAAAAGAGAAAGATGGTGAAATTTCTGAATATTTGG
ACTTTATCGTGTCATCGTCAACGATTGTGAACTTTGTTTTCTTTATTTAC
CTCATAAATAGCCATAGTCAAGTAGTCCAAAGCGTCAGCATCATAAACAG
GGCTTTCCGGTTTGAACGAGCCTCCTGTTTCCTTCAGTCCNGGTCCAAAG
CGTCAGCATCATAAAAAGGGCTTTCCCGTTTGAACGAGCCTCCTGTTTCC
TTCAGTCCATAGAAAGCCAACCAAAAAAAGCAATTGAAAGATAGTATAAA
AATCTTAAATATAGACATTCCAAATTAAATAAACTAACCTCTTCCTTATC
TTATTTCAGCTACAGGAATATGGTCTTCAAGACTCCGTAATTAATCTGAG
TGGAGACAGTGCTTTGGATTTTACATTTGATGCAAAAAAGTATTTCAGCT
TGCAAGTTGCAATTTCTGGCAAATTGGCTTTATGTTGTGGATTCCAAATA
GTCATTAATGAAAAGGTTGAAATTGGGCTGAATGAAATCAAAAGGTATTT
GCCATCAAAATCCCTTTAGGGGGAGGTTGATTATATAACCACCCTTGGAA
ACTTGCCCTTGCCATAAAGAATTCATGAAGAAAACAGAGAACTGAGAATA
GTCTTAGGGTTATGGCCATTCTTTTATTTTCTGATGGCTTTTCCATGAAT
TTCTTTTTTCAGTGCATTTATGAAGAGCAATGATATCGACAAATCGTTGG
TACCAGAAAGGTGGATAGAGAACCATTTCAAATGGATTGTATGGAAATTA
GCCGCTTACGAACGACGCTTTCCTGGCCAGTTTGCTAACAAGTATAAACA
ACACCTTTATTGTTAAGCTAAAAAGACATTGACAGGACCTTTATCCATTC
TAATCGGGGTCTTATTTCGGTCCAGTAAAAGATGAATTTCGCCGGTCCAA
TTCATTAAACAATTCGCTGGTCTTAAACATCTTGCTAGTCCAAGTTTATA
TTCATATTAAACAACAAATAATCTTACTAATAAATCTTAAGCCGAGGAAG
CAATTTGCCATTCGCCAGTCGACTGAAAACTCCTGTTTCACAACTTTTCT
CAATAAATTTCCAGATGCTTGACACCTTTTATTGTGATGGAGCAACTCAG
ATATCGCTACGATAAAGAGCTTGAAAAAGCAGAACGGTAATTTTTTTCTG
CATGAGTTTCATTTCAAGTCATGAGAACTCAATCACTCAATCATATACTA
GACTTTGTAGTTTTTTTCTGTACGCAGTAAAGTCTACTTTAAGGGAACTT
ATTTTGGCGGGAACTAATTTTGACAAGAGGCAAAAATCCTGAAAATTTTT
AATTTTGGCGAGAACTTATTTTGGCGATGATGAATTTTATTAATTTTAGT
GGGAACCTAATTTTGGCGAATGACAGCGTAAATCTGTTTTATTTTGCCTT
ATTTGCAGCTTTTTTGTGAACTCAAGAAGTTATTTAGGCAAAATACCAAA
AAAATTAATTTTGGCGAGAACCTATTTTGACGAGTGAGCAAAATATTTAA
TCTTGGCGGGAGCTAATTTTGGCGAAAGTTCCCTTAAGGTATTTCACTTT
GCGGGTTTAAATGTTTGGAGCCAAAGCTATACACGAGGGACTCGCTAATG
TACCATTCACTTTGTATTTTGATACACATTTCTGTCATCTTACAATTCTG
CTGGTATGTACACCTTTCATTTCATTTTGTTCTATCAATCTCCCCCTCTC
TAGGTCATGCTTGAAGAAGATTTATGAACGCGATGACATTTCAACTCGTA
GGATGATTCTCTTTGTTAGTGATATATTGCATGCTGTTTCAAACAATGAC
CAAAAGTGCAAAGTAAGTTGTAACGTTCGTATTTTTTAGTTAATCTCAGC
AAAATAGACATTCAGGGGAATTAGGCTAATGCGTAACGCTTAAACGCCTG
AGTCCACTCGGTCAGGGTGTTACACAATAAATAGATGAAGCATTCCGAAA
GGAAAAGGGATATTGAAAAGTGTCTCAAAACGAAGGATATGGAAAGAAGG
GGCATTGACATGAAACCATCTGGTCAAGATTTCCTCCCCTTTCCCTTCTG
TTAGGGATTCTCATTTCTAAATAATGAGAGAATGCCAACTCAAAGAAGGG
CGTATCAGAATTCCTTAGTCATTTTTTACACATTTTTAGACTGTGATCAA
ACTATCAGATGGTTGGTATGAGATCAAGGCTGGTCTAGATCAACCTTTGA
GTGCATTCTTGGACCACAAGAAAATTGCCATCGGAACAAAACTCTGTGTG
TACGGTGCTGAATTGATCGGATCCACGCAAGCCTGTCCTCCTTTACAGGT
AAATAATTCTTTAACTTATTGGTCCTTGTAATATAGAAGCCAGTTAAAAA
AGTGACACTAACTATTTGCACTGACTGGAAAACAGAAGATCTACTAAGAC
TAAAAAACTACAAAATCTCACCTACCTTTTGATTGTCTTTCCAATATTTC
TTTAAAGGCACCTGAAGATTTGATGTTGATGTTATCAGCCAATTCCACAC
GAAGAGCATCATGGGATACTAAGCTTGGATTTCAGCCAATCAAACAAGCC
TTTGCTGTCCCTTTGACGTCGCTATATTCGGACGGGGGTTCTGTTGGTTG
TGTCAATATCACTATTCTTCGAAAATACCCTACTCAAGTAAGATTTTTTT
GGTTTGCTAATTTTGTTTAGTTCGTAAATGTTAAGTGTTTCTACTCGAAG
TTTGGGTGCTTACAGGTGCTTTGATCAATTCTTTGCCCAATAACTACGAC
GACCATATGACAATTTCAGAAAAAAAAAGATCAAACTTAATCCCAAAATG
ATTTTGCAATGAATCTCTGTGGAGACAGATAAAAAACGACAATATCCCAT
TTTTGAAAATATTTTTAACGTAATACTCTTTTACACATTTCAGTGGATGC
AGAAAGAGGGCGGACGTTGCATCTTCCGAAACCTCCAACAAGAAGAGGAG
GCGAAGAAGAAATACGAAGAACAAAAACAAAAGAAAATGGAAACACTCTA
CGCATCCATTCAAAAAGAATTCGAAGAAACTACCAATAAAGGTTTGCGAG
GAATCTGTTATCTTTTATGTTCGACGTTTAAAGACAAGTTGGGTTTATTT
GGAGTTTTCACAATCTGTTATTTGATTTGGTTGGTCGTTAACCTGTAATA
AAACATTTTTTTAACTTTTTCTAAAGAATGCGTCATCTCTATCACTTTAA
ATGACCAAATGGCCAATTAGTGGAAGTGTGTTATAAAACCTCCAACTGAT
CCCAATGAATTGCCTTTAATGTATGTTTGAATAAAATAACTGTAACTTCA
GGTAACCTGACCTACACTGGGGTTCGTAAATATCTTCAATTTTAATAAAC
TGGATGATCTATTTCCCGGAGGGATGGATATACCCCCAAAAATAAGGTTT
TCAGAGCAAATGAAAGGACTTTGTTGGACAACTGCAACAATTCTCTAAAA
ATTAAGAAACGAGGGCCCTAATAAGGTCTGGGATTTGAAAAGTTCATAAA
CAAAGATTTTTTTGTTCTTAAGGAACGAAACGTAAAAGACGAAGTTTGTC
AATGAAAGAAATCGGTGAACTAAAAGACGGACGGGACATTTATAATGCCA
TACAAAATTCTATTGATCCATCCACTGTCGAGGTAAAGAGATTTCTTTAT
ACGTCATGATTAGTTTAGTCTGTCATCATCTTGTATTGCGAAGCCTCGTT
ATTTACTCCATTGTTCAAGGTTAATTTTGGGTATACATTTTCACAAATCC
GGAGTTATCGTAAGACTTCTGTTTTTCCCTAGTGTTATTTGAGCGACTCC
CAGAAAGAAGCAGTGTTTAAACACAAACAAAAGAAACAAACACTGGAACA
AGATAAATTGAGACGAACATTCCAAAACCAATGGCAAAATATTGTCGAGG
AAGAGGTAACTATTTTGCTTGTATGATACCGAGATCTTATCTCCATTGCA
ATATTGTATAACAGATTTAGCTCTAGAGAGCCATAATTTGAATTGCGTTC
TCAACTCAATGATAAGCAAGAACTAAGTGAACTAGTTATCGATTACACCA
AAGAGCCGAAAAACTGCTGATTGTACAATCATTCTCTCCCCTTCTTTTTT
TTAGTTTCCAGATCGATCAGTGGTTCACCTACAAAGATATCGTATTTGTG
AATGCCCTACCCTCAACTCCAAAAGCAGACCATTCAAAGGTGAAAGACGG
TTTAGATACAGAACTCTTAATGAAATTATTTTGTATCCCCTTCTTTATGC
TAACGTCAATTTACCCAAAAAATTTAGCTCTGACTGTTTCCTGCTCTACT
GTTGGCGAGACACACACACATGCCTTCTCATAACGTTATGAAGTGTCACA
ATTGTAAACTTTTTGTTGAAAAAATGTTTATCTTTTTATATCGGAAACAT
TCTTTGTCTTTCAAAATACGGGTATAGAAAACTTCGCTCTAGCCATCGCC
ATCATAAAAATCAGAAAGATTGGATTCAGCAAACGGATTTTCGTCGCCAG
GTTTCCGGGCTAACGTTACTTTTAATCCCATTTCCTTCCGTGTAGAATTA
TTTACATGCGTGTATGAAAAGTTAGTATCAGGGGCTAGAGAATTAGAACC
CGGATAGGTAGGGAGGCATATTATAAACATTGATGAGTTATTGCTGGTAT
AGAATTCGCAATACCTTGACAAGCAATAACCACGGGTTCACGACTTTAAC
AATAATTAAACGTTACCAGATAACACGTTTTTTGATTATGTTTTCAGACG
CTATCCTTACTGTATGGAAACCGACCGAAGACATCAACGAGAATTTCAAA
GAAGGAGTTAACTTAAAACTCTTCAACTTGAACACCTCTGCTTCAAGGTG
AGAAGAATTGTGATTGGTTTATTGCATTTTTGCATTCCCATATTTGAAAA
TTGTCGAAAGGTAGTATAGAACAAATTAAAAACATTTTAAGGATTTGCGC
ACTTTAAAACAACCAATTTCTTAGAAAAATGGACAAAATTTTTCACAAAA
TGGTGAAAAATAAGAACATGTTAGGAACATTTTTAGGCTTGAAAGTCAAA
AAGATAAGAACATCCAAAGGCTTGAAAATTTTGGATGATCTTATAAAAAA
ACGTGTATGCAAGTATTTATATTCTTCTTCTATTTTCTCTTTTTTCTTAG
ATACAAGCAAACTAGTTGCAATTTTCAAGTAAGTAATATTATTGACATAC
AATTTTGCTCCTGGATGAACCTCCGTTTATTGATAACGATTTATCGAAAA
GTTGAGAGTCATGTTTATTAAGCCAATTCATCTAAAATCACTATTTATCA
CTTTCTTTCAATAGCTTTCCACGACCAACACGACCAAATATCGACTAATT
GAAGATGATCTGTGCGCTGAGAACATTGATTACATTCCACGCCAGGTAAC
GACGTCATTTCCGAAGCCTGTCATAAGTAATTGTATCTGAACCCTACCTG
AAATATTACATATTATGTNTCCGAAGACTGTCATAAGTAATTGTATCTGA
ACCCTACCTGAAATATTACATATTATGTGCAGAGGGATCTGAGCGGTCAT
TTCAATCCCCTGTTTATACATCCCTCTATTTTTTAAAGAATCCTACACCA
TTCACATTGCCAAATTTTAAATATATACCAAATTATTTAAGAAATATTAG
ATACCATAAATATTTTAACTCAAATTTTGTTCACCTCTCTTAAAGCTCGA
ACCCAATTTCTTCGTAAAAAAAGTCCCACCCACACTTATAAAGACTTAGA
CTCCCATTTAAAGGAGGGGGTGTTCACTCTATGTTACCTCGCCAAGAATA
GGGACGAGGTGGAGTTTTTACAAGCTCTTTTTTGATTTGGTTGGTCGTTA
ACCAGTAATAAAACAATTTTGCTACTTGCTAAAGAGCGTGCCATTTTTAT
TACATCTAGTTATTAAAGTATCTTATAAAAACTCCATCTCATCTGCAAGA
ATTAGATTTTGCGCTCACCTGAATTTGTTACACAAAAGGGGGATATAAAG
TGTACTTGTATATAATTATTTCTTATAACTTATTTTGTTGCACCGATAAA
GGCGACTCCGATAGATGAATTGTACACAAAATCACATGTACCTTGTAATG
AAATTGACGTCGTGGCTTATGTTCTTTCTGTGGAACGTCAAAAAAGGTTT
GAAACTCTCTTTCAGTTCAATGAGTTTGTTAAAGTTATTCGAGTATTAGT
GCTAGTGAATAGTTGGGCCATTGAGGCTTCACTCAATCAAGGCTGATNCT
TATAGAAGGGTGCTAGTGAATATTTGGGCCATCGAGGCTTCACTCAATCA
AGGCTGATTCTATTACAAGCTGACCATTTTGACAATTTTTTTATATTTGC
TTTTAAAATTGTGTTTCTAGTACTGAAGAAGTCATGTATCTCTATGATGG
CGGAGAGAGGTTTCTTGCTGTAAAAGTCTGGAATAACCCGCAGGTAAAAA
CTATTTTAAATTCTCACAGATCTGTAGGACTTTTTCAGCCAGTGGAGGTA
GAAATAACGAATTGAAACTCTGTTTTCCTGAATTTAAATTTTCGATTTCT
TTTAGAATGTGAAGAACAAGTTGGAAGGTTGTGTCATTGCTGCAACCAAT
TTGAGTTGGCAAAAGTTCGCAACACCTTCTCGAAATCGTATCATCCATGT
TCAGTTCACTGATTTTTCGAATTTCTCGAAGAATCCCAAAGCTGAGCATC
TTCGAAAAGCAATGAACAAATATCAAAGCTCCTTGGTAATTTTTCCCTCT
TTTGACTCAGTAACGCAGAATGGTTAGAATGCATACCATAACATAAAGAC
TCTTCTTCATTCGAAGTTTATATCNTTCTTTTGACTCAGTATCAGTAACG
CAGAATGGTTAGAGTGCATGCCATAACATAAAGACTCTTCTTCATTCGAA
GTTTCTATCGTTAATTGTTTCTGATCAACAAACTCAGTTGCTTGCTAAAG
GTCTGGAGCCACTTGAAACAAATTCAATTAAAATGAAACATAGACAAATT
GCAGTTCAATTGCTAAACTTTGATCGAGTGGCCCAACCGCCTCAGAGAAA
TCTCAACAATAAACAATTTTTTTTCACTGTAACTACAATAAAAGGTTCAA
AAGTTTTCTGCAACTGTTTCTTTCTAAGCAGAAACTGTTGATTGTATATG
TTTTCTTTCCGTCATTTTAGGTGGGGCCACTAGCAACTTTTCCGTCAAAG
TGTAACACTTTTCAATGTTTCTGTTTGATGAAAATGTTTCAAGTGGCCCA
GACAAGTTCATTTTCAGTATTTTCTTAAACTAACGTAGTTTTTCTTTCAT
TCTAGACGCAGAGGGCTATACAAGTTGCCAGAAGTAACCTGCAACAACAA
TTACAAACGAACAGTTCGATCAAAAAATTACCTCCTATTTCCAGCATTGA
AACCACCAATAACAATACCATAACGGTGAAGGTACTAACTGCAATTTTTG
CAAATTTCACTCGTAGACAATTGTTTGTTAACTACAGTCTAAACGATGTA
GATATTTACAATTCCGAAAATGAAACTTCCCAGCTCTCAGTTTACAAAGT
TTAAAAGTTTGATATTCAATTCAAAATAATATTTTAAAGAAAGAGGCTAT
GGAGAAAAGAATTCATTGGGGTATGGATCCGTTATTTACCAATTTTTTTT
TTATATAAGTTTATTTTTTCATCTTCATTTCAGAAAACAATATCATCGGA
TTCAAAACGAGAACAAAGTTTTTGCGACGATCTCCCATCAGAAAAACTAC
TTTCCCGGCAAAAACTTCAAATGAAAAAACGGCTATCTTTGGACCGTTAC
CACAACCCGCCGGGGTTGAGCCCTCTACAGACTCGAGAAAATGGAGTTTT
AAAGTCTCAATTTAAACCCCCTTCTACATTGTCCTAAGAAAAATGAAATG
TTTATATTAGATAGAAGATTGCATGTTAAATTACGTTAATACTGTACATA
TTGATATACTGTTAATAAAAAGGAAAATTTTTATTTTGAGAGAGTAGATT
TTTTATTTATTTAGATTATTTTTTAATTTAGCCTATTATTTAGCCAGCCA
ACCCCTCCCTGCTTGTCTCAACTCAAACCAGTACACTTTGAAATCGTATT
TTCTTGATTTTGATCGGTTTGTTCCCAACCCTTGCCCTTTCCAAACCCCT
TGACACTTTTAACTCTTCCATCTATCTTTGTGTTTTTTAGATAGTATAAA
ACAATGTAAATTTATTTTGTAAGGATTTGAAAAGCGAAAATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034529	XLOC_034529	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_245	supercontig	scaffold_245:357886..366679 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.86842	4.31584	2.9455	2.41393	2.89516	2.35801	1.70803	1.83169	2.13701	2.42879	1.97565	1.50508	1.71954	2.54359	1.17194	1.64448	1.23181	1.34557	1.00262	0.745783	1.11132	1.19861	3.1497	2.44755	0.648403	3.17017	1.89037	1.49619	4.56486	4.65641

Blast

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BLAST of TCONS_00054811 vs. Swiss-Prot (Human)
Match: BRCA2 (Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2 PE=1 SV=3)

HSP 1 Score: 384.03 bits (985), Expect = 1.538e-111
Identity = 241/652 (36.96%), Postives = 382/652 (58.59%), Query Frame = 3

Query:  411 PSVYSRKELQEYGLQDSVINLSGDSALDFTFDAKKYFSLQVAISGK-LALCCGFQIVINEKVEIGLNEIKSAFMKSNDIDKSLVPERWIENHFKWIVWKLAAYERRFPGQFANKCLTPFIVMEQLRYRYDKELEKAERSCLKKIYERDDISTRRMILFVSDIL-----------HAVSNNDQKCKTVIKLSDGWYEIKAGLDQPLSAFLDHKKIAIGTKLCVYGAELIGSTQACPPLQAPEDLMLMLSANSTRRASWDTKLGFQPIKQAFAVPLTSLYSDGGSVGCVNITILRKYPTQWMQK-EGGRCIFRNLXXXXXXXXXXXXXXXXXXXTLYASIQKEFEETTNKGTKR--KRRSLSMKEIGELKDGRDIYNAIQNSIDPSTVECYLSDSQKEAVFKHKQ----KKQTLEQDKLRRTFQNQWQNIVEEEFPDRSVVHLQRYRICECPTLNSKSRPFKDA-ILTVWKPTEDINENFKEGVNLKLFNLNTSASRYKQTSCNFQLSTTNTTKYRL--IEDDLCAENIDYIPRQATPIDELYTKSHVP-CNEIDVVAYVLSVERQKSTEEVMYLYDGGERFLAVKVWN--NPQNVKNKLEGCVIAATNLSWQKFATPSRNRIIHVQFTDFSNFSKNPKAEHLRKAMNKYQSSL 2291
            PS  S K+L  YG+    I ++  +A  F F  + YF  +   +GK + L  G  ++ +   + G  E   A   +  +D  L+   W+ NH++WI+WKLAA E  FP +FAN+CL+P  V+ QL+YRYD E++++ RS +KKI ERDD + + ++L VSDI+           +  S+ D +   +I+L+DGWY +KA LD PL A L + ++ +G K+ ++GAEL+GS  AC PL+APE LML +SANSTR A W TKLGF P  + F +PL+SL+SDGG+VGCV++ I R YP QWM+K   G  IFRN ++EE+   KY E +QK++E L+  IQ+EFEE     TK     R+L+ +++  L+DG ++Y A++N+ DP+ +E Y S+ Q  A+  H+Q    KKQ   Q ++R+  ++  Q   +E+   R V  + + RI       S S+  KD+ IL++W+P+ D+     EG   ++++L TS S+ K    N QL+ T  T+Y+   + D++  +   Y PR+     +       P C+E+D++ +V+SV ++      +YL D     LA+K W   N   +K  +   +IAA+NL W+     S++ ++ +   DFS FS +PK  H ++  NK ++++
Sbjct: 2532 PSACSHKQLYTYGVSKHCIKINSKNAESFQFHTEDYFGKESLWTGKGIQLADGGWLIPSNDGKAGKEEFYRALCDTPGVDPKLISRIWVYNHYRWIIWKLAAMECAFPKEFANRCLSPERVLLQLKYRYDTEIDRSRRSAIKKIMERDDTAAKTLVLCVSDIISLSANISETSSNKTSSADTQKVAIIELTDGWYAVKAQLDPPLLAVLKNGRLTVGQKIILHGAELVGSPDACTPLEAPESLMLKISANSTRPARWYTKLGFFPDPRPFPLPLSSLFSDGGNVGCVDVIIQRAYPIQWMEKTSSGLYIFRNEREEEKEAAKYVEAQQKRLEALFTKIQEEFEEHEENTTKPYLPSRALTRQQVRALQDGAELYEAVKNAADPAYLEGYFSEEQLRALNNHRQMLNDKKQAQIQLEIRKAMESAEQ---KEQGLSRDVTTVWKLRIV------SYSKKEKDSVILSIWRPSSDLYSLLTEGKRYRIYHLATSKSKSKSERANIQLAATKKTQYQQLPVSDEILFQ--IYQPREPLHFSKFLDPDFQPSCSEVDLIGFVVSVVKKTGLAPFVYLSDECYNLLAIKFWIDLNEDIIKPHM---LIAASNLQWR---PESKSGLLTLFAGDFSVFSASPKEGHFQETFNKMKNTV 3166

The following BLAST results are available for this feature:

BLAST of TCONS_00054811 vs. Swiss-Prot (Human)

BLAST of TCONS_00054811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BRCA2	1.538e-111	36.96	Breast cancer type 2 susceptibility protein OS=Hom...	[more]

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TCONS_00054811 (transcript) - C. hemisphaerica