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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054826 ID=TCONS_00054826|Name=TCONS_00054826|organism=Clytia hemisphaerica|type=transcript|length=1592bp
attggaaaaactttttattggtttcggaaagaagaaagaaaaggaTTTGC
ATAATCGAGTAAAAAAAAGAATACCTCCTAAAGCGTCAGAGGGGTGAAAT
TGGAGGTCGGCCGCGCATCACGAGAAGTGTATTGACATCACACGAAATGT
ATTCTTTCTCCTTGGTCTTTCTCAGTTATACTTGCATGTTTTTTGTTACA
TTCGCATCTAGAACAATGGTGGCAAAAGAGATCGCTGATATCTTTTGCGA
AAATGAACTCAAAAAATATGGCATGGAAAAGAACACACAATTCATGGATT
TATGCCGCGGTGCACCCATCCCATTTTTACACGGCGTAGAAGGTTTTAAG
AGAGGATTGGAGCATTGTAAAGAGAATTTCAAATGCCATCGATGGAATTG
TACGACAGATGAGGACCATGGGTTCAAACTTTTTGGCACTGGAATGGCGA
GAGCATCTCGTGAATCTGCCATTATGATTGCAATGACATCAGCGGGTATT
GTTGAACATGTGACTAACCAATACGATAGCGGGAAAAGAGACCGCGTCAG
AGTATCACGTGATGATTGTATCAAGATAAACTCACGGCGGCCGAGACATC
CAGAAGAATACGTCAGTGTACATGATTGCAATGCAGACGTAGTGAAAGGA
GAAATTCAAGCGCAGAAAATGATGACGACATGGATTCAAGGTTTGAAAGC
GAAcgagaaagaaatgaaaatgaatgaaCACAATGCTGCTGTTGGCAGAA
TGGCTGTCAGAGTGAACATGCGAAAAATCTGCAAATGTGTCGGTCTATCT
GGAGCTTGCAACGCCCGGTTATGTTTCCAACGAATGAAACAATTAGACGT
CAGTACAAAGTGGCTACGTCATAGATACGACAACGCACAAAAAGTACAAG
CATCTAAACGTGCCAAACGTGACGGTACGCGGCCGCTTGTCACGGTCGAG
CGTTCAGCAACGCCCGCCAAAGACGATTTAATATACTTGTTAAATTCACC
GAACTATTGTAATTATGATACCAGTACTGGGAGTCTGGGTACGAAAGGAC
GTTTTTGTAACCGTTGCGGGAACGGCGTTGGCAGTTGTGATCAACTCTGT
TGTGGAAGAGGACATCAAGAGTACCAGGTGACGAGAACTAAAGCATGTAA
TTGTTCTTTGGTTGAATTCCAAATGGATTGTCAGCAATGTGAAGAGAAAC
TGGTTATGTATAGATGCAAATGATAGATGACCCTTAGTGTTAATGTAGTC
GGAATCCAGCGCCAGTCGATGTCCAGTTGGTCGTCTGATTTTAGACCCTT
ATTGGTCTTTATTTTAGCCGACAGTATCTGCACTGGTCCTAAACAAATTT
CTGTTGAACAGTTAAAAAATCATAATGTTAAAAGAACAAAGAAGACATCT
AACAAGTACTTAGACTGTCAACAAGTGACAAGTGTTACCGTTCTAACGGA
CTATGCTAAAAAATCTACTCAACCTTTTTAAGTCCTATTCCTGAGCACTA
GTGAGTTTATTTGGCTTAATTATAATTTTGAGACCAGATTTATAAAAGTT
AAGCAAACTTTTTGAAAGTGGTCGTATCACGGTATTCTTAAC Run BLAST on NCBI transcript from alignment at scaffold_245:578896..585927- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054826 ID=TCONS_00054826|Name=TCONS_00054826|organism=Clytia hemisphaerica|type=transcript|length=7032bp|location=Sequence derived from alignment at scaffold_245:578896..585927- (Clytia hemisphaerica)
ATTGGAAAAACTTTTTATTGGTTTCGGAAAGAAGAAAGAAAAGGATTTGC
ATAATCGAGTAAAAAAAAGAATACCTCCTAAAGCGTCAGAGGGGTGAAAT
TGGAGGTCGGCCGCGCATCACGAGAAGTGTATTGACATCACACGAAATGT
ATTCTTTCTCCTTGGTCTTTCTCAGTTATACTTGCATGTTTTTTGTTACA
TTCGCATCTAGAACAATGGTGGCAAAAGAGATCGCTGATATCTTTTGCGA
AAATGAACTCAAAAAATATGGCATGGAAAAGAACACACAATTCATGGATT
TATGCCGCGGTGCACCCATCCCATTTTTACACGGCGTAGAAGGTTTTAAG
AGAGGATTGGAGCATTGTAAAGAGAATTTCAAATGCCATCGATGGAATTG
TACGACAGATGAGGACCATGGGTTCAAACTTTTTGGCACTGGAATGGCGA
GAGGTACCGATTCTTTATTCAATTTAATTCCTTGAGAAATCTTCTTATTT
TAAAATTTATAGTTTTCTTCCAAAATCCGATTTTACGTCTGTCGCGTGAT
CGGGGAAAATGGGTTATCACGCAACTTTCTAGTCAAGTAATGATTTATAT
AGGCTAGAAAAATTTCTGTTGGATTTTTTTTTCTCAATCTATACTTATAT
ATCATTTTTTGTTTACAAGTGCAGTTTCTACGTTATTTTCAATGTCTGAT
TTTTGTCGTCGGCTATTACCATTTAGCAGTTGCATGAAAATTGACCTTCA
TTCCTTTGTACACATTGTTTAGATGGATTTCGGTCAAACATTTCGGACCT
TCATGTGAGATTTGTCTTTGATATAATGGAAAATAGATTTGATTTCTGCA
ATTATACTGACTGAGTTGGAAAATATGTAATCTCAAATTCTTCTAACACA
CATCATGTTTTTTCAGACATCGTTGTATCATACAACCTTCCTTAACATAA
ATAAGCACCCTTCCATAACTTACGTAAACAGATCTAAAACGTATTATAAT
AAAATAATACGTCTAACTTTTCTTTATCCTCTCATCACTAGCATACTACT
ACAACAAGTCCCTCTTACTCTTTGATCTCACGGATTCCGAATTGAATCGT
TTGCTTTCCGGAAGCAATCATCATTTCTCCTTCATGTCAAGATAAATATA
GAACGCGCGCCCGCCCGCCACTGAACTACCAACTGTATGCAGTTTTCTTT
TAAAAGAATGCCAAGAAGATATTTGTATTTTAAGATCGTTTGATTATTAG
CAGTACAGGTAAAGGAACTGGCATTTCATATAAATCATCACCGATGAGTT
TTTAAGTTTGTATGCCCTTTTACATGGTATCAGCCCCCCCCAGAAATTTG
AAGGGCACCTAGGCCAGGTTAGTAGAGGGGGCTAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTAGTTT
CCCATCCAATTTTTCTTTCGTTTCCCATCACGCCATCTTTTGCTATATTT
TTCTAATGTGATTGTTTTGATTTACAGCCGCCATCTTTATATCATAACAA
CGAAGCTTATCAGCAGGTGTTCATGCGTGAGCATGATTTTAGGAATGACA
AAAGAACAAAAAGTGTCAATTCAAAGAAATTATCTGCTGAATAGGGGTAC
CTAACTCAAAGCAATTTTTCAAGGGGACCTAAATTGCTGGGGGCACCATG
CTCAATGGGGGCACCTGAAAAGTGGGCTGAAACCATGCCTTTTACCCCAG
GATAGTTGACCAAACCTCCAGCTCAGGAGCTTCAATTTGTGAAAAATGTC
AAGAGATCTTCTAGCATTTAAAAACGTGTTCAAGAGTGGATAATGAACCG
AGTTAACCTTTTTCATTAATGTTTTCTATATAGACAGTATCATTCCATAA
GCATCATTAATTGGAAAGGTGGTCATATCTAATTTGCTCGTCATCCTAGA
AAAGGTGGGGTGAGAGTTTATTCTTAATGTTTCAAACACCGTTATTTTCA
ACCTATTATATCACTCTTTACATATAATGATCTCTTTGTGTCATACCGAA
TTCATGCTACACTCAGCATAGCTAGCATGCTAGACGACTAATTCAGACAT
AACAGTAGAAAATAAGCAAAAAGTAATGGAATTCTCGAGTCAATTCTTCT
TCAGGTCTATTCTTTTACATGGACTGCAGTCTCGAGCAGAACCCTTGACT
TTCAACAGGTTAGAAATTTGACATTTATATTTTTTGTTTGATATTTTCCT
GAACGTATGGTTCGTATTTGTCGCTTAATCTTTGTAGTATGACCCAATGA
AATAGAAGCCTGAAGGGCTAAAAGCGAATCTTTAACCTTTCTCAGGCAAA
AAAAAGTGAAGCCTTTAAAATGTAAGCCGTATTTTTTATGACGGATTGAA
TCTAGTGATTTCTTTGTTTTTGAGTGGTACATTTTTGAAAATCTGGCGGT
AAATTTTACTTTCAATACGGCAATTTTGTGAAATCCACGTGGACTGCGAT
AGGCCACAACTTAGGTAGGATTTAATGGCTTAAAATCCTTCCTAGGAGAT
TCACTTCTAGCCTTTCGGGCTTCTATTTCATTGGTATGACCACCTGGGAA
GATTTGAATTCATCTATTTTTACTTTGGCTTTTGTAACGTCATTGGAGCG
TCTTGATTGATTATGTCCATAAAACAGCAGTGAGACGTAGGCGAAATTGA
TTTCATCATTCACAAAATTGCCCATGTCAGCATGTTCTCTCTTTTTCTTC
TTCTTTTGTTGTTGTCAAGAGAGGTTTTAAGTTTGGAGACGCTCTGTAAA
AGGTGTACTAAGCTATCTAAATTGTTTGTCAATAATTAGATTAACGTAAT
CATTTAATCCCTAATTGAGATAGGAATGTTTATTTTCATAACGCGTGGTG
ACGAATGAATGGATTGTCTTGTGATAAGTTATGAGGGATATGCCGAGTTA
TGGGGGATATGCTGAGTTTTAAACTCGTTATCGGACACACTGACGAAGAC
TTTTGAAAATTAGTTTGGGAGTTGTAGGGTTCTAACCTGAACAATATTAT
GTAAAAAGTTCGTCCCCTCAGATTATCTGATATGATTTTGATCAGTGTAT
ATTTCATGGTATCCTTGTCAAGGGATTATGTTTCGACGACAGTTCTTCAA
GGAGTGGTGTCATCAATCTATGATCGAATTAACAAAGGTCCAATGATCTT
AATCACTCCTTTTCATTGTAGTATCTAGGTGTCTAGGTACTTAGTTACTG
AATCTAACTTGTTTGTTAGGAACTGCTCTTCAAAATTTGAACTATTCCAT
TTAAAGATCTTTTTAAATATTCTGTAATCTTGCAAGATACTGGGTGTCCC
AGAAAAAAAAGAATAATTTTCTCGAGTTCTATTGACTGTTAAACAATCAA
TCCTTTTTGGCTTTGGAAAGACAAAGGATTAACTTGAATTATAAGGGGCC
ATTTGTCAGATTTAGTTAACTAGATCAAAAAGTATTGTCCAAATGTTAAA
ACATTACTTTTCAAAAAAGTTAAAAAAGGCGAAAAACGAGGGTATTAAAT
TCCCTCGGGGTATTTATTTCTGAGACGCCCGGTATTTTCACTTAAATTTC
TTCTGACCTTCCATCTTTTTGCTTATCTTTTGGAAGATGTATCTGGAAGC
AATAGGAAACAACAAAACGCGGTCACTATTTCGGTATCAATATAACACTC
TTTGCAAACCACAAGACAAACCTGGAAAACCACAGAAAGAACATCCCGTC
CAAACTCACTTTGGAAACTTTTTTTATATAAACAGGAAGTAGAAGAGAAT
TCTTCGCTAATTATTTCATTTTGAAAATGATCCGGTATTTGGTTGAGCTA
TTATTAATGCGTAATATCTTTGCGGTTTTTTGGTTATGCTTGCGGCACTT
GGTTTGGCTATAATTATATCAAAAAATGGCTGCTATCCACTTTAGGGTGC
TCGATGATAAAAAATTATAAGTGAGATTCGTTCGCGATTTAAGATTGATT
GGTTATCTTTATTAAACAAATTAGTCAAGCTTAATTGGTCCTTACGATTG
CTAAATTTAGCTCTATCTGATTGATTGATTTTCTTTATATAGAAGCTTTT
GATCATGGCGAATAGAATGCTTCTTTAATTTTTCATTCCGCTATTTTGGT
ACAATCTGCCAATAAGCCATTTGCCTGTTTTCTAAATAACTTACTAAACA
TTTACAATCGGAGCTTTTTCATGCTCCTTTTGCGGGCTTCCTGTACTGGA
AAACTGCATTATATACATTGATTATTTAAAAAAATAAGGTTATGCTATAT
ATGAAATCTGGTTTCCTTCGTTATTCCTAGAATAACGAAAGACTCTCATT
CCAAAAAGGTTCATTCTTGTACAATTTTTTCATCACATTTCCAGCATCTC
GTGAATCTGCCATTATGATTGCAATGACATCAGCGGGTATTGTTGAACAT
GTGACTAACCAATACGATAGCGGGAAAAGAGACCGCGTCAGAGTATCACG
TGATGATTGTATCAAGATAAACTCACGGCGGCCGAGACATCCAGAAGAAT
ACGTCAGTGTACATGATTGCAATGCAGACGTAGTGAAAGGAGAAATTCAA
GCGCAGAAAATGATGACGACATGGATTCAAGGTTTGAAAGCGAACGAGAA
AGAAATGAAAATGAATGAACACAATGCTGCTGTTGGCAGAATGGTAAGAC
GCTGAAAAATTTATTTTGTCGTGATATTCTAGAAACCCTTATTTAAATTT
AAATTTGAGGAAAATTTCATAAAATTTGCCGCTTCTGACAGAAACCAGCG
TTTTTCCGTAGAAAACATTACGTAATGAATACCGTGAATTCATGCTTCCC
ATAGCTTTTTTATTGACTGCCATCTTATAAATTCTTTCGATTCTTTCGTG
GTACGCTATCTGAATTATAATCAAGCGAATTGATTGACAAGGTACGCGTT
TAGCAAGCACCCTAAGGTTTATTTCTTGAAAGGAATATAATAAAAAATGT
TGAAAGTTTTTTTCTGTTTTCTGTCCTTGATAATTTGATCGTAAGCTAAG
ACAGAGATTCCACATCGTTTAGTTGATGAGCTTTGAACGATTTTCATTAT
CATTCATTTTTTCGTAATAAAGCTCACATTTCTGTACTTATTTGATCGGT
CGGCCAATTGCGCTGCGTCTATTGTGAGTGTTAATGAAGTATGATGACTT
GTGGTCTAACCACCTCGTAAATTCATGCCATGTTCGCGTTCTACGTTTTC
TGGCATGTATTAATCATCTTGAAATATTTGCAATTTTTTCTTATTATCGA
GGCTAAGTAAACCGGTATAATCGTAACGACAAACGGTGGAAAATGTAATA
AGCTAGTTCCATGGCGTTCTAAATCTACAGGCCTAACAAGCGTGCGGCGA
CTTCGATATTGTGGGGGCTCAATTTTTCGAAGTCGTTGCATTGACGCTAG
TACAAAATGTACCGCGGAGCAAGAATTTCAGTGTAAAGAAATGGATTTTG
TTTTGTTTTAGTGACCTTTCCCAAGCCTAAGCGTTAACCTAGGTTTGAGT
CACAGGCACAAATTAGATCTCCATCCTAAGATTTTTGAATATTTATAGGC
ACCTGTCCATTCAGTATTGAAGTCAAGATTTAGATATTCTGCCTCAGCTA
TGCCTCACACTCATAAACTTAATATTTGCAAAAAGTGATTCTAAGGGATT
CATTTATTTTGAATGATGATCTATGTGATTCGTTCTTCAATTAAACTTTC
CAAAATTTCACTAAAATCCACCAGGAAATTTAGATTTAAAATGCCATGCG
CTAGTTCCAATCAATTTTTTTACATATTTGCACAAGCCTATTTATCACAT
TCTTCATCCATACGCACGAATAACCTTTATGTTATCTAGTTCCCAGGATC
ATCTATAAAATTCTTTAGAATTGGACCTTCAATAATATAGTAGATTTTTG
TTCACTATAATTTTCTAATCAAGCTCACTTTTATTTCGTTAGGCTGTCAG
AGTGAACATGCGAAAAATCTGCAAATGTGTCGGTCTATCTGGAGCTTGCA
ACGCCCGGTTATGTTTCCAACGAATGAAACAATTAGACGTCAGTACAAAG
TGGCTACGTCATAGATACGACAACGCACAAAAAGTACAAGCATCTAAACG
TGCCAAACGTGACGGTACGCGGCCGCTTGTCACGGTCGAGCGTTCAGCAA
CGCCCGCCAAAGACGATTTAATATACTTGTTAAATTCACCGAACTATTGT
AATTATGATACCAGTACTGGGAGTCTGGGTACGAAAGGACGTTTTTGTAA
CCGTTGCGGGAACGGCGTTGGCAGTTGTGATCAACTCTGTTGTGGAAGAG
GACATCAAGAGTACCAGGTGACGAGAACTAAAGCATGTAATTGTTCTTTG
GTTGAATTCCAAATGGATTGTCAGCAATGTGAAGAGAAACTGGTTATGTA
TAGATGCAAATGATAGATGACCCTTAGTGTTAATGTAGTCGGAATCCAGC
GCCAGTCGATGTCCAGTTGGTCGTCTGATTTTAGACCCTTATTGGTCTTT
ATTTTAGCCGACAGTATCTGCACTGGTCCTAAACAAATTTCTGTTGAACA
GTTAAAAAATCATAATGTTAAAAGAACAAAGAAGACATCTAACAAGTACT
TAGACTGTCAACAAGTGACAAGTGTTACCGTTCTAACGGACTATGCTAAA
AAATCTACTCAACCTTTTTAAGTCCTATTCCTGAGCACTAGTGAGTTTAT
TTGGCTTAATTATAATTTTGAGACCAGATTTATAAAAGTTAAGCAAACTT
TTTGAAAGTGGTCGTATCACGGTATTCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00054826-exon-scaffold_245-1575043694:585475..585927 | TCONS_00054826-exon-scaffold_245-1575043694:585475..585927 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1575043694:581035..581333 | TCONS_00054826-exon-scaffold_245-1575043694:581035..581333 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1575043694:578896..579735 | TCONS_00054826-exon-scaffold_245-1575043694:578896..579735 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1510915933:585475..585927 | TCONS_00054826-exon-scaffold_245-1510915933:585475..585927 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1510915933:581035..581333 | TCONS_00054826-exon-scaffold_245-1510915933:581035..581333 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1510915933:578896..579735 | TCONS_00054826-exon-scaffold_245-1510915933:578896..579735 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1491911889:585475..585927 | TCONS_00054826-exon-scaffold_245-1491911889:585475..585927 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1491911889:581035..581333 | TCONS_00054826-exon-scaffold_245-1491911889:581035..581333 | Clytia hemisphaerica | exon |
| TCONS_00054826-exon-scaffold_245-1491911889:578896..579735 | TCONS_00054826-exon-scaffold_245-1491911889:578896..579735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:578896..585927 - |
Blast
BLAST of TCONS_00054826 vs. Swiss-Prot (Human)
Match: WNT2 (Protein Wnt-2 OS=Homo sapiens GN=WNT2 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 4.042e-43 Identity = 107/309 (34.63%), Postives = 153/309 (49.51%), Query Frame = 3
Query: 300 LCRGAPIPFLHGVEGFKRGLEHCKENFKCHRWNCTT-DEDHGFKLFGTGMARASRESAIMIAMTSAGIVEHVTNQYDSGKRDRVRVSRDDCIKINSRRPRHPEEYVSVHDCNADVVKGEIQAQKMMTTWIQGLKANEKEMKMNEHNAAVGRMAVRVNMRKICKCVGLSGACNARLCFQRMKQLDVSTKWLRHRYDNAQKVQASKRAKRDGTRPLVTVERSATPAKDDLIYLLNSPNYCNYDTSTGSLGTKGRFCNRCGNGVGSCDQLCCGRGHQEYQVTRTKACNCSLVE-FQMDCQQCEEKLVMYRCK 1220
LC P +G C+ F+ HRWNC T D DH LFG + R+SRESA + A++SAG+V +T G+ V+ D K+ S + + C+ ++ G A+ + + K + MN HN GR AV+ +++ CKC G+SG+C R C+ M + +L +Y+ A +V ++ DGT V ER P K+DL+Y NSP+YC D GSLGT GR CN G+ SC+ +CCGRG+ VTR C C + CQ C E L ++ CK
Sbjct: 54 LCHRHPDVMRAISQGVAEWTAECQHQFRQHRWNCNTLDRDH--SLFGRVLLRSSRESAFVYAISSAGVVFAITRACSQGE---VKSCSCDPKKMGS--AKDSKGIFDWGGCSDNIDYGIKFARAFVDA--KERKGKDARALMNLHNNRAGRKAVKRFLKQECKCHGVSGSCTLRTCWLAMADFRKTGDYLWRKYNGAIQVVMNQ----DGTGFTVANERFKKPTKNDLVYFENSPDYCIRDREAGSLGTAGRVCNLTSRGMDSCEVMCCGRGYDTSHVTRMTKCGCKFHWCCAVRCQDCLEALDVHTCK 349
The following BLAST results are available for this feature:
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