TCONS_00054848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054848
Unique NameTCONS_00054848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054848 ID=TCONS_00054848|Name=TCONS_00054848|organism=Clytia hemisphaerica|type=transcript|length=1790bp
CCAGAGTGTACAtatgtaaataaataaacaaagaaatgCATATCGGGTAG
AAAATAATTGCAAACGAAGAAACATGGACAAGATGTTAAGAATTGTGTTG
TTTTTGGTTGGATGTTTTGGGCTTGGATCATGCTTACCTCCTAATAATGc
ATCATTAGAATTTGTTGCCAAAGATTGGGCACCTCCTTGGCCATACCCTT
TCCCTCGACCTCCAAATCTGCCCTCTCGGAAGATGGTTTTCAAAGGTGTT
CGGTTTACAGTTAATTGTACGACAAACGATCCCGATGCCGTCGTCCAACT
GTTCGAACGAGTGAAAAACGAAAATTCTAAGAATTCTGAAATCGAGAAAG
GAGGTCGGATCCAAAAGgtAAACCAAACTTTTGTTATCGATCCAGTGGAG
AGTATAGACATCAGAGATTATGAATGTATCGCTGAAGATGCCCGTGGTCA
AGAAAAGATCTTGAAATTAGGTTTTCTGAACGTTAACAGACTTAGCGTAC
TTGACCCAATCGAACTCTACCCAAGGGAAAATCCAACCTTCATacatgaa
gatgagaaaaaggcTATCAATTGTTCATCAGAAGGCCACCCTGGATTTCA
GGAAAAAGACTTGATTTTAAGCTGGTATCGTCTAGTTAACGGGAAAGAAG
TCAAAATAACGGATGGTGTTATACATCGTGATTACACGGACAACAACCGC
GGTGGTACTCTCGACTATGCAGATTTGGTGTTCACAAAGTTCAGTAAAAA
TGATGAAGGTGTCTACATTTGTAAAAGAATCTTGGATAAACATGTGAAGG
CAAAAAATGTCACCTTAAAGCTAATCACACCTTATAAACCAAAAGTTGCA
CTACCACAACTTCCAAGCGGCAAGTTTTCTCGGCCAACTGGTTACCGTGC
AACGGTAGTGTGTGAGTTGATTAGTTCTCCTCCTCCCTCCGTCAAGAAAT
GGATGAAAGGGAGTACCGTCATTGAAGATTGCTCTCCTTATACTGCCAGT
GATTGTATACTCAGTATCGGTGCAACACAACATTCCAAAGATAGTGGCGA
TTATTATTGTGTCGGTGAAAATAAAATGGGTGAAACGAAAGTGAAATTAG
ACTTGCAGATCACagAGAAAGTGGAACTTGACAAGCCAACTACTACAATA
GCTGTGATATATGAAGAAGATAGAGAGCTTGTGTGTAATGTGGCAAAGGC
GAACCCACCACCTACCATTGTTTGGGAATACCAAGTTGACACCTGTGAAA
AGGCCGATGATAATTGTGTACCATTAGACAATGAATGGAAACGAGTAACT
GAGCAAACTCCAGAATCTGAAACACCGACCATGAAAAGTAAAATCATTTC
CAAGGCCACACAGAAGAACCATTTCTATCGGTGTGTAGCCACAAACAAAG
TGGCCAGTATCCAGTTAAATCAGTTCGAAACGGCCAGTGATACTTATAAT
TTCAAAGTCATTCGGACAGAGAGATCGAAAGTACAGTTCGTTTTTCTCGC
CGAATCAACAGCCATCAACGAAAACGATAAAATCAATATCTCATGCATCG
TCGACATGACTAAGTACAAGAAACCCCGAATCTCCAAAATCGGGGATAAT
CGGTTACTGACAGTAACTCAAACGTCTGGGGCTAACAATATTGATACGTT
TACTTATTGGAAACCGATTTCCGAGTTAACCGATTCGGGATCGTATATTT
GTGAAGCGGAAAATCAAAGAGGGACAAATAGTAACAGTCAAACATTGGAG
ATTAACATTGAACCGTTGGTTAAGGCCAAAATCACCGAGN
Run BLAST on NCBI

transcript from alignment at scaffold_245:793464..799437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054848 ID=TCONS_00054848|Name=TCONS_00054848|organism=Clytia hemisphaerica|type=transcript|length=5974bp|location=Sequence derived from alignment at scaffold_245:793464..799437- (Clytia hemisphaerica)
CCAGAGTGTACATATGTAAATAAATAAACAAAGAAATGCATATCGGGTAG
AAAATAATTGCAAACGAAGAAACATGGACAAGATGTTAAGAATTGTGTTG
TTTTTGGTTGGATGTTTTGGGCTTGGATCATGCTTACCTCCTAATAATGG
TAAGATACTAATAACGACATTTCATTTGTTAATATTTCGTTTATAAAATA
CTTTAAAACTTACAAATTCAGCCGAAATATTTCAAGTAATAAACAAAATC
CACTGGAATTATGACAACAATAATTCATACCTTAATACTGTCTTGAATAA
ATTTATAGAAAAAAAGCTTCAAGGGAACAACACTATGATCGATGAATATA
ATAATTGTATTTTGCTAAGCTAGATCGTAGCATTGTCCACAGACAATAAT
AATCTTGGACTTCTTCTTTATTTTTCAAACAGCATCATTAGAATTTGTTG
CCAAAGATTGGGCACCTCCTTGGCCATACCCTTTCCCTCGACCTCCAAAT
CTGCCCTCTCGGAAGATGGTTTTCAAAGGTGTTCGGTTTACAGTTAATTG
TACGACAAACGATCCCGATGCCGTCGTCCAACTGTTCGAACGAGTGAAAA
ACGAAAATTCTAAGAATTCTGAAATCGAGAAAGGAGGTCGGATCCAAAAG
GTATCTTTTATTTGAAGTTGGATTTGTTAAATTAATTAGGAGTCTTTGTT
TTGAAGAAATAGTAGTACTAGTATTTGTAAAATTTCAAAGGACTTTATCC
AACAATCTTATCAGCTTTAATATCAGAGAATATAATGTATCCATTTCTTC
CATATGGACGAAAAAGAAAACAAGACGACTTGAAGTCGAAAATTTCGCCT
AGAATTTGAACTACATGGGAAAAACAAGAAAAAGATGAAGCTAATCTGAA
ATTTACTTTACATCGAGCCTTGATGAAACAATTTTACAACAAGAACAACG
AGGCTTAAAATCGCTAAAAAAATAAGACCAATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AATTACCGAAAGGTATATCACCGTCTATCAAGAGTTATTGATTTGATTCT
TATAAAGTAAATGCTTATAAGAAAAATAAATATGCTCATATTGTGCCCAT
CCCTTGTTTACTTTGTAAGAACTAATTACCGAAAGGTATATCACCGTCTA
TCAAGAGTTATTGATTTGATTCTTATAAAGATATGCTTATAAGAAAATAA
AGAAAAATCAAAACTGTGAAGCTAAAGACACAAAGATATAATGACGTAAT
CCAAAGAAATCCTGCGAAGATCTTCTGTGGTTATACGAGCGTGTAATTTG
TAAATTGATTTTAGTGAGTTTGTCCACCGTATCAAGTACTTTCGTTTTCT
AAATTTTCGTCCGATATCGCACCATGCCTATCGTAATACTTTCGCTAAGG
CGAAATTAATAATTGCGAGTGTAATTCAAAGTCATCTTGCGACGTTCTTG
TTTCGTTCTGTTTCTCTCTGTATCGCTGTATCTAACCTCAAGAATACATT
GGGACATTTTTATTGAACTTATTAAACAGACTTTCCGTCTCATAGGAAAA
AATCGTAACAAACAGACTGCTAATTTCAATTTTTTTTAGGTAAACCAAAC
TTTTGTTATCGATCCAGTGGAGAGTATAGACATCAGAGATTATGAATGTA
TCGCTGAAGATGCCCGTGGTCAAGAAAAGATCTTGAAATTAGGTTTTCTG
AACGTTAACAGACGTAAGCCATTACTTTATATCATTCTCCATATTTCGAA
CCTCGATTGAACGCTGACGATTTTTCTGTCCCTCTTTACGAGAAAACTTA
GCCTATACTTGCCTCTCAATAAATACGCGAATACGGTAATTACTAATTTT
CAATCGCATACCAGTTATGGAGTCTCAACTGTGATGGGGCTCGGAATTCT
TTGTCGCTTTAAAATTGTTATACATCTGTTAATCTCGATCAGCAGATTGA
TATATACGTACATGGGAATGATAATTTTGTAAAAGAATACCCCTTAAATT
GGAATAAGTTTAATTGAAAAAGCCCCGTTGACAAGAGCCGTTCTTGAGTT
TGGTACCAGTTCTTAGACTTAATTTCATAACTCCTTCATCTACAATGTTA
TTGGACCAGCTTTGGATAGGTGTTTAAGGATGTTTAAATTATGTTTCTTT
TTAGTTAGCGTACTTGACCCAATCGAACTCTACCCAAGGGAAAATCCAAC
CTTCATACATGAAGATGAGAAAAAGGCTATCAATTGTTCATCAGAAGGCC
ACCCTGGATTTCAGGAAAAAGACTTGATTTTAAGCTGGTATCGTCTAGTT
AACGGGAAAGAAGTCAAAATAACGGATGGTGTTATACATCGTGATTACAC
GGACAACAACCGCGGTGGTACTCTCGACTATGCAGATTTGGTGTTCACAA
AGTTCAGTAAAAATGATGAAGGTGTCTACATTTGTAAAAGAATCTTGGAT
AAACATGTGAAGGCAAAAAATGTCACCTTAAAGCTAATCAGTAAGTTGAG
TTGGATCCGTCCAAATTCACTTTTCACAATTTTAAAGCTGATTGGATGTT
AGATTTTTATTTGGACATTTTTGTACAGTACATATAACTCACAACTGATT
GCTATTCGAAAATTATGTGAGATAAGCATACCTCGAAAACCAAGTTTAGG
TTACAGAAAAATCAACCTTCTTAGAGCGTCCTAAATTAAGCTCCTCCTGT
ATAGGTTCTTGATAACGAAGGAAAAATTATCCAAAAATTGTAAATAAAGT
GTAAAATTTCCTCTGTAAGGCTAAGGGATCGATTTTTTACTTACTTTTTG
ATTTAATCTATTTGTAGCCAAGTAGGCCTGATAGTCAAATTTATGTATGT
TTCTTTTCTATAGCACCTTATAAACCAAAAGTTGCACTACCACAACTTCC
AAGCGGCAAGTTTTCTCGGCCAACTGGTTACCGTGCAACGGTAGTGTGTG
AGTTGATTAGTTCTCCTCCTCCCTCCGTCAAGAAATGGATGAAAGGGAGT
ACCGTCATTGAAGATTGCTCTCCTTATACTGCCAGTGATTGTATACTCAG
TATCGGTGCAACACAACATTCCAAAGATAGTGGCGATTATTATTGTGTCG
GTGAAAATAAAATGGGTGAAACGAAAGTGAAATTAGACTTGCAGATCACA
GGTATAATTGTTTTTATTTGTAAAATTTCCAGTCCTTTACCTTCTATATT
TTTCAGACTCTCGCAGGAGGTACTATAATTATCTTGCACGGTTGACAAAG
TATGTTGAATATGTTTATTCGAACCTCGTCCCGTGTATTAAATAGAAAGA
GTTTATATTCAACGTGGATAGCCAAGAAATCTTTGACTTTAAGACAGTCT
TTCGATTGTTTTTACGGGGTCCACGGCCAACAGGCTCGGCTATCTGTGAA
CTGAACGGAAATTTTGGAAGGAGGGGAACCCCTGGTTTGAGGCGCTGACA
CCTTAGATCACTTAGTCATCACTCCTTTTACCTGGCTTTATTTACGTAAT
TTATGTAAGTAAGTATTAAAAAACTGGGAACGAGGTTGGTTTTCATAATT
CTTTTCATTTGATTTTTTGCTACAGAGAAAGTGGAACTTGACAAGCCAAC
TACTACAATAGCTGTGATATATGAAGAAGATAGAGAGCTTGTGTGTAATG
TGGCAAAGGCGAACCCACCACCTACCATTGTTTGGGAATACCAAGTTGAC
ACCTGTGAAAAGGCCGATGATAATTGTGTACCATTAGACAATGAATGGAA
ACGAGTAACTGAGGTAAGAAAGATACTGTATATACTGTGGATTTAAAAAT
AACAATTATATTATATGACTATCATCCCTCGTCGACAGTGAAACCTTTTC
AATTTGAATTTTCCTTTGACGCTTTGGTGCTTTGGAGCTTTGTTTCTCAA
ATAATGACTACGCCTTAGACTATAGCATAGGCTGTTTAATTTTCCATCCT
TGTGCCGTCAACAAAAATGGTTCCTGTCTATCTGCTTTGTTTAGTTCATT
TCATAGTCGAAATGAATCATGGGTAATCAATACTGGTTGCGCTCTAGTAA
CGATTGCCGGTTGGCTAGACGCAAAAATCTTCAAAGATTTTCAAAACTTT
GGACAAATAGTAAGTCGTCATTAGCGCGCAGTGGTCCTGATTACTCATTA
CGCTTTGCGACTGTGAAATTGTCTATATTACTGTATTCGAAAGCTCGTTG
AACTAATGTATAGAAAATGAAAATAATGAAAAATTCATTTATGGATCTTA
CAGTTCCGGAATTTAAAACACAAAGAAGTCTAATCAATTCCTGCTTTATT
CTCTCCAGCAAACTCCAGAATCTGAAACACCGACCATGAAAAGTAAAATC
ATTTCCAAGGCCACACAGAAGAACCATTTCTATCGGTGTGTAGCCACAAA
CAAAGTGGCCAGTATCCAGTTAAATCAGTTCGAAACGGCCAGTGATACTT
ATAATTTCAAAGTCATTCGGACAGGTAAAAATTGTTTCCTTCTATTTATA
AGGGATTGAAATTAATAAAGAAATTGTTTCTAACGCACCAACGCGTTTAT
ATAATATAGACTACATTAATGTCTACTTTCACACTCGCCGTTTGATATTA
TCTGACTCTTCAGAATTCTAAAATCTGAGGTACCAGAAAGTTTCCCAAGT
TAGAACATTTCAGTCAGAAAATTTTTAAGTTGACCACCTTATCAAGACCC
AAACCAAGACATAGCCTAATTTGAATAACCTCTACACAGAAAATTTTAAT
CATTAAGTGACCACGTGGCAATATATTGGTTTTGCTTTCAAAACTTTCTT
TGCGGACACATAGCGTTAAAACATCGTCTATCTAACGTTCCCAACAACCA
AACGTTAGAAACAACGCTTTTTGCGACCGCTTTGTTAACATCCTCTTTCG
TTCTTCTTTTACAGAGAGATCGAAAGTACAGTTCGTTTTTCTCGCCGAAT
CAACAGCCATCAACGAAAACGATAAAATCAATATCTCATGCATCGTCGAC
ATGACTAAGTACAAGAAACCCCGAATCTCCAAAATCGGGGATAATCGGTT
ACTGACAGTAACTCAAACGTCTGGGGCTAACAATATTGATACGTTTACTT
ATTGGAAACCGATTTCCGAGTTAACCGATTCGGGATCGTATATTTGTGAA
GCGGAAAATCAAAGAGGGACAAATAGTAACAGTCAAACATTGGAGATTAA
CATTGAACGTAAGTTCTTAAATTACCTAGTCTATTTTGAATGGTAGTTTT
GATCAAATTATGTTTATTAAGAACAAGTTGATTCGAATGTCTGTATCTGC
AGTAGTTGTCATCTGGATCTCATTTGGTAAAACTCCTCAGAAATTGAAAG
TTTCTGTTCGTTAAGTCATGTTTGCTCGGGATATCGTTAGAGACTTTTTT
CAATAGTGTAATATTTCTTTCGAAATCGAGAATATGTAATAATTCATAAG
CATAAGAACTTGTGATAGATTGGTAATTGGGTAATTAATGAATTTCGAGT
TAATTTCAGATTAACGTCTCGTATTTTGCTCCATTTACTTACTACAGCGT
TGGTTAAGGCCAAAATCACCGAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034547XLOC_034547Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054848-exon-scaffold_245-1575043694:799289..799437TCONS_00054848-exon-scaffold_245-1575043694:799289..799437Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:798788..799005TCONS_00054848-exon-scaffold_245-1575043694:798788..799005Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:797325..797448TCONS_00054848-exon-scaffold_245-1575043694:797325..797448Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:796548..796883TCONS_00054848-exon-scaffold_245-1575043694:796548..796883Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:795887..796174TCONS_00054848-exon-scaffold_245-1575043694:795887..796174Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:795275..795462TCONS_00054848-exon-scaffold_245-1575043694:795275..795462Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:794564..794729TCONS_00054848-exon-scaffold_245-1575043694:794564..794729Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:793830..794123TCONS_00054848-exon-scaffold_245-1575043694:793830..794123Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1575043694:793464..793490TCONS_00054848-exon-scaffold_245-1575043694:793464..793490Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:799289..799437TCONS_00054848-exon-scaffold_245-1510915933:799289..799437Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:798788..799005TCONS_00054848-exon-scaffold_245-1510915933:798788..799005Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:797325..797448TCONS_00054848-exon-scaffold_245-1510915933:797325..797448Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:796548..796883TCONS_00054848-exon-scaffold_245-1510915933:796548..796883Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:795887..796174TCONS_00054848-exon-scaffold_245-1510915933:795887..796174Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:795275..795462TCONS_00054848-exon-scaffold_245-1510915933:795275..795462Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:794564..794729TCONS_00054848-exon-scaffold_245-1510915933:794564..794729Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:793830..794123TCONS_00054848-exon-scaffold_245-1510915933:793830..794123Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1510915933:793464..793490TCONS_00054848-exon-scaffold_245-1510915933:793464..793490Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:799289..799437TCONS_00054848-exon-scaffold_245-1491911889:799289..799437Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:798788..799005TCONS_00054848-exon-scaffold_245-1491911889:798788..799005Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:797325..797448TCONS_00054848-exon-scaffold_245-1491911889:797325..797448Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:796548..796883TCONS_00054848-exon-scaffold_245-1491911889:796548..796883Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:795887..796174TCONS_00054848-exon-scaffold_245-1491911889:795887..796174Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:795275..795462TCONS_00054848-exon-scaffold_245-1491911889:795275..795462Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:794564..794729TCONS_00054848-exon-scaffold_245-1491911889:794564..794729Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:793830..794123TCONS_00054848-exon-scaffold_245-1491911889:793830..794123Clytia hemisphaericaexon
TCONS_00054848-exon-scaffold_245-1491911889:793464..793490TCONS_00054848-exon-scaffold_245-1491911889:793464..793490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:793464..799437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37921	1.34809	2.90645	1.44829	21.4474	20.0032	21.2197	20.0799	7.11541	10.1611	11.0605	7.48887	16.0704	13.9508	8.94281	12.4634	24.018	27.911	9.3676	12.3745	14.6713	14.9041	3.83012	9.21416	27.1041	23.7898	12.5535	4.17765	7.05757	4.64307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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