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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054849 ID=TCONS_00054849|Name=TCONS_00054849|organism=Clytia hemisphaerica|type=transcript|length=5162bpRun BLAST on NCBI protein sequence of TCONS_00054849-protein >TCONS_00054849-protein ID=TCONS_00054849-protein|Name=TCONS_00054849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1318bp MMNLSNKLSTLLLCLALITPSFSVTPNGEAFKFTAKAWTRQFFKPRAYSHRun BLAST on NCBI transcript from alignment at scaffold_245:799641..813060- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054849 ID=TCONS_00054849|Name=TCONS_00054849|organism=Clytia hemisphaerica|type=transcript|length=13420bp|location=Sequence derived from alignment at scaffold_245:799641..813060- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_245:799641..813060- >TCONS_00054849 ID=TCONS_00054849|Name=TCONS_00054849|organism=Clytia hemisphaerica|type=CDS|length=63312bp|location=Sequence derived from alignment at scaffold_245:799641..813060- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054849 vs. Swiss-Prot (Human)
Match: FGFR2 (Fibroblast growth factor receptor 2 OS=Homo sapiens GN=FGFR2 PE=1 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.092e-91 Identity = 165/349 (47.28%), Postives = 218/349 (62.46%), Query Frame = 3
Query: 2640 ELPYDMVWEFPRERVTLGENLGSGAFGVVKMAEAEGIAGFRPRDNXXXXXXXXXXXXXXXXYHQIKDKKEINGGYKQSNIDTVAVKTLKDETSESEYKDLASELKILIHLGEHKNIVNLLGACTTGNAKLLVILEYCSNGNLLSYLRERREIFQPQWSPRSKDVSVT----FTYTDLVHIACQISDGMEFLQAKKCVHRDLAARNILVDENHNMKIADFGLARDIYKDEFYLKNTTGLLPIKWMAPESLFDRVFTTSSDVWSFGILLWETFTLGGSPYPGLPTDDLYGYLENGGRMKRPDICPKDVYSVMMECWEKSPYRRPMFSQISTKLNYILTNHVPNGSYMDMTQ 3674
ELP D WEFPR+++TLG+ LG G FG V MAEA GI +P++ TVAVK LKD+ +E + DL SE++++ +G+HKNI+NLLGACT + L VI+EY S GNL YLR RR P S D++ T+ DLV Q++ GME+L ++KC+HRDLAARN+LV EN+ MKIADFGLARDI ++Y K T G LP+KWMAPE+LFDRV+T SDVWSFG+L+WE FTLGGSPYPG+P ++L+ L+ G RM +P C ++Y +M +CW P +RP F Q+ L+ ILT N Y+D++Q
Sbjct: 467 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAV-----------------------------------TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-DGPLYVIVEYASKGNLREYLRARR----PPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT-LTTNEEYLDLSQ 774 The following BLAST results are available for this feature:
BLAST of TCONS_00054849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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