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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054876 ID=TCONS_00054876|Name=TCONS_00054876|organism=Clytia hemisphaerica|type=transcript|length=1325bp
CACCCACCCTTGTCTCATAAACTTTGTAGAGTCTTGAAGATCACAATCCT
AACGAAAGTCTAATGATCAGCAGAATTAGTTTATTTACAGAGACTTTTAC
AGCGAAGTCATTCCATTGATTTAGACAAAAACATTGGAAGCTTAACATCA
TCCGTGGAAGAATTTTCAATACATTATTGTCTACGGGCTTTTAGTACTTC
TAATAACGTCAGTATATTGCTTTCAAAATGCTTTCATTTACTGGAACAGT
GCTTATAAGGTAAATGGTCATacagaaaacaaagaaatgctCTTTTTGAT
CAGCCATTATAAGGTTTGAATATAGAAGACATGATATTTGAAGAATAGAT
TGATGGGGAGGGTGATGAATTTCTCATGTGACAACTTGTCAAGCGTGTTA
TCGTGTCATTCTTATCCAAAAGACTTTTCGTGATATCATAGTTTGCTTTA
GAGTGAATTTTCAATGCTTCTTTGAAACTACCCAAATTACGGCCTGGTCG
TTGTACAGGAGCTTCCCTTAAACGCATATAAATGCAAATAACGGCAATCA
CGTGGAATTGCAAGGAATAGACAATGTTGGAGATACGATGCATCCAAGCG
TGATTGAAAGTGTTTGGAAAAACTTCGATGAAACACCATGgcaaggagaa
gaagaagaaagaaaggATGATGAGGCGTGGGAATTTACTGATGCGTCGCC
GAGGATCACGGCTATATCGTCCATCGTCGTTCTTGAAAAGTTGATCACGA
ATCTGTTGAACTTTGAGAATCTTCTTTTTTAGTGTTCGCATCACAATGAC
GTAAAATGAGACCATTGAGATCAAAACAATAACGGTTAAAACGGCAAATA
TGAGCCTCATGAAGTGTTTACCGTGAGAGATGACCGCATCACCAATTGAT
ATGGACATGATCCAGGATAAGAGGAGTAGACCATTGATGGATTTGATTTC
ACGTTTGTTTTTTGACAGTCTTAAAGAGTAATCAGCAGCGATCAAACACC
AGAGGTGGCTTATACATAGCAGGATGGAAGAGTATCGAATCACGTCTGTT
AATTGTGATAGGATATGGTAAGTCTCGCAAAAATTGCATATCGAATTCAA
TAGAAAAATTGAACTGCTTAATGCGTTTCCACAACACAGACTAAGAAGTA
TGTCCTTGTATATGACTTTAAGACGTTCCTTATTGATGGTGAGCAAGGCG
ATCAATGAaaggagatttagaaaaacagaCGCAGAATCTATTGCGATAGT
CACCATGTATATCTCTCCGATATGATCTGTCGGTAACCCATCTTTATTGA
TATGCACTTTGCAATGAATAACTTC Run BLAST on NCBI protein sequence of TCONS_00054876-protein >TCONS_00054876-protein ID=TCONS_00054876-protein|Name=TCONS_00054876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
EVIHCKVHINKDGLPTDHIGEIYMVTIAIDSASVFLNLLSLIALLTINKE
RLKVIYKDILLSLCCGNALSSSIFLLNSICNFCETYHILSQLTDVIRYSS
ILLCISHLWCLIAADYSLRLSKNKREIKSINGLLLLSWIMSISIGDAVIS
HGKHFMRLIFAVLTVIVLISMVSFYVIVMRTLKKKILKVQQIRDQLFKND
DGRYSRDPRRRISKFPRLIILSFFFFSLPWCFIEVFPNTFNHAWMHRISN
IVYSLQFHVIAVICIYMRLREAPVQRPGRNLGSFKEALKIHSKANYDITK
SLLDKNDTITRLTSCHMRNSSPSPSIYSSNIMSSIFKPYNG Run BLAST on NCBI transcript from alignment at scaffold_245:703681..705005 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054876 ID=TCONS_00054876|Name=TCONS_00054876|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at scaffold_245:703681..705005 (Clytia hemisphaerica)
GAAGTTATTCATTGCAAAGTGCATATCAATAAAGATGGGTTACCGACAGA
TCATATCGGAGAGATATACATGGTGACTATCGCAATAGATTCTGCGtctg
tttttctaaatctccttTCATTGATCGCCTTGCTCACCATCAATAAGGAA
CGTCTTAAAGTCATATACAAGGACATACTTCTTAGTCTGTGTTGTGGAAA
CGCATTAAGCAGTTCAATTTTTCTATTGAATTCGATATGCAATTTTTGCG
AGACTTACCATATCCTATCACAATTAACAGACGTGATTCGATACTCTTCC
ATCCTGCTATGTATAAGCCACCTCTGGTGTTTGATCGCTGCTGATTACTC
TTTAAGACTGTCAAAAAACAAACGTGAAATCAAATCCATCAATGGTCTAC
TCCTCTTATCCTGGATCATGTCCATATCAATTGGTGATGCGGTCATCTCT
CACGGTAAACACTTCATGAGGCTCATATTTGCCGTTTTAACCGTTATTGT
TTTGATCTCAATGGTCTCATTTTACGTCATTGTGATGCGAACACTAAAAA
AGAAGATTCTCAAAGTTCAACAGATTCGTGATCAACTTTTCAAGAACGAC
GATGGACGATATAGCCGTGATCCTCGGCGACGCATCAGTAAATTCCCACG
CCTCATCATcctttctttcttcttcttctccttgcCATGGTGTTTCATCG
AAGTTTTTCCAAACACTTTCAATCACGCTTGGATGCATCGTATCTCCAAC
ATTGTCTATTCCTTGCAATTCCACGTGATTGCCGTTATTTGCATTTATAT
GCGTTTAAGGGAAGCTCCTGTACAACGACCAGGCCGTAATTTGGGTAGTT
TCAAAGAAGCATTGAAAATTCACTCTAAAGCAAACTATGATATCACGAAA
AGTCTTTTGGATAAGAATGACACGATAACACGCTTGACAAGTTGTCACAT
GAGAAATTCATCACCCTCCCCATCAATCTATTCTTCAAATATCATGTCTT
CTATATTCAAACCTTATAATGGCTGATCAAAAAGagcatttctttgtttt
ctgtATGACCATTTACCTTATAAGCACTGTTCCAGTAAATGAAAGCATTT
TGAAAGCAATATACTGACGTTATTAGAAGTACTAAAAGCCCGTAGACAAT
AATGTATTGAAAATTCTTCCACGGATGATGTTAAGCTTCCAATGTTTTTG
TCTAAATCAATGGAATGACTTCGCTGTAAAAGTCTCTGTAAATAAACTAA
TTCTGCTGATCATTAGACTTTCGTTAGGATTGTGATCTTCAAGACTCTAC
AAAGTTTATGAGACAAGGGTGGGTG Coding sequence (CDS) from alignment at scaffold_245:703681..705005 >TCONS_00054876 ID=TCONS_00054876|Name=TCONS_00054876|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_245:703681..705005 (Clytia hemisphaerica)
GAAGTTATTCATTGCAAAGTGCATATCAATAAAGATGGGTTACCGACAGA
TCATATCGGAGAGATATACATGGTGACTATCGCAATAGATTCTGCGtctg
tttttctaaatctccttTCATTGATCGCCTTGCTCACCATCAATAAGGAA
CGTCTTAAAGTCATATACAAGGACATACTTCTTAGTCTGTGTTGTGGAAA
CGCATTAAGCAGTTCAATTTTTCTATTGAATTCGATATGCAATTTTTGCG
AGACTTACCATATCCTATCACAATTAACAGACGTGATTCGATACTCTTCC
ATCCTGCTATGTATAAGCCACCTCTGGTGTTTGATCGCTGCTGATTACTC
TTTAAGACTGTCAAAAAACAAACGTGAAATCAAATCCATCAATGGTCTAC
TCCTCTTATCCTGGATCATGTCCATATCAATTGGTGATGCGGTCATCTCT
CACGGTAAACACTTCATGAGGCTCATATTTGCCGTTTTAACCGTTATTGT
TTTGATCTCAATGGTCTCATTTTACGTCATTGTGATGCGAACACTAAAAA
AGAAGATTCTCAAAGTTCAACAGATTCGTGATCAACTTTTCAAGAACGAC
GATGGACGATATAGCCGTGATCCTCGGCGACGCATCAGTAAATTCCCACG
CCTCATCATcctttctttcttcttcttctccttgcCATGGTGTTTCATCG
AAGTTTTTCCAAACACTTTCAATCACGCTTGGATGCATCGTATCTCCAAC
ATTGTCTATTCCTTGCAATTCCACGTGATTGCCGTTATTTGCATTTATAT
GCGTTTAAGGGAAGCTCCTGTACAACGACCAGGCCGTAATTTGGGTAGTT
TCAAAGAAGCATTGAAAATTCACTCTAAAGCAAACTATGATATCACGAAA
AGTCTTTTGGATAAGAATGACACGATAACACGCTTGACAAGTTGTCACAT
GAGAAATTCATCACCCTCCCCATCAATCTATTCTTCAAATATCATGTCTT
CTATATTCAAACCTTATAATGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054876-exon-scaffold_245-1491911889:703681..705005 | TCONS_00054876-exon-scaffold_245-1491911889:703681..705005 | Clytia hemisphaerica | exon |
| TCONS_00054876-exon-scaffold_245-1510915933:703681..705005 | TCONS_00054876-exon-scaffold_245-1510915933:703681..705005 | Clytia hemisphaerica | exon |
| TCONS_00054876-exon-scaffold_245-1575043694:703681..705005 | TCONS_00054876-exon-scaffold_245-1575043694:703681..705005 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:703681..705005 . |
Blast
The following BLAST results are available for this feature:
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