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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054878 ID=TCONS_00054878|Name=TCONS_00054878|organism=Clytia hemisphaerica|type=transcript|length=1723bp
ACCCGTCTGTCTTCTAACCGTGCACGTCAAGCACGTAATGATTTGAAAAA
TGCTATCTCTCTCACCAAAAGTGAATGGATCTCCAGAATATGCAATGACT
TAAATATATCTGTTGCAAGAGAAAAAGGTACAAAAACCTTTTGGGACTGT
ATCAAATCGATTAAACGCGGACTTCACAGACCAATCCCATCATCTCCAGT
TATGATGTGTAAAGCAGACGGTACAAAATGTCGATCATCAGAAGAAAATG
CAGAAGTCTTTCGTAATCACTTTCAAACCCTCTACAATCGACCTTCAGTC
TTCGACTCAAACATCCTTGACTCCCTAGACCAGTGTCCGATTGATGATTC
GTTGGGCTTCGTGTCATCTACTGATGAAGTATACAACGCTATAAACCACC
TCAAAAACAATGCTCCTGGTGAAACAGGAATTACTGCTCAAATGCTCAAA
TCAATTGCTCAAGatagtgtttgttttgattacttATACCAAATTATAAT
CGTTATATGGACAAATGAAGAATGTCCAGCTCAATTGGATATCGGTCGTC
TCGTAATATTACCAAAGAAAGGTGATCTCAGTAAACCTGGAAATTACAGA
GGCATCATGCTGTTAGAGATTGCCTATAAAATTGTGGCCATCGTTATTAA
TAAGAGACTTCAACCGCTCATTGAACAGCtcgatcacgaaaatcaatgTG
GTTTCAGAAGGGGTCGTGGCTGTGCCGACGCTGTTTTTACTGTAAAAATG
GCTATCAAGAAACGTCGTGAGCATAACCTTGAAACATGgattttattttt
ggacctGGTCAAGGCTTTTGACAGGGTTCCTCGTCCACTCTTATGGTGCA
TTTTATCCAAATTTGGTGTCGCTAAGAAATTGATTGATGTCTTAAAATTG
CTACATAAAAACTTCCAAGTTACTTTTGATGTTGAATCTGTTGCCCATAC
CATGCCTTGTACTATCGGTGTGAAGCAAGGTGATGTACTCGGGCCAGcat
tatttatcattttcatagCCGCTGTTATGATTACATGGAGGAAAATCCAC
GATCGCCCACTCTGTATCTTTAGAACAAAAAATGATTACAATCTCACAGG
CAGACGATATAATTCTAAAGGAACTGACTTTGATGTTGATGACTCTGAGT
ATGCAGATGATACCGCAGTTCTCTTCGAATCCCGAAGAGACATCGAATGC
TACTCACCACTTTTAGTTGAACATTTTGACCGTTTTGGAATGGAGATTCA
TGTTGGAGATTATAATACGCCTGATAAACCATCGAAAACAGAAATTCTTT
TCGTTAGCAGACCTCTAAAAACTACACTGACCCCGAATCTTTCGACAATA
CCGACCTTACGAACATCGAccttggaaatcaaaaattcttCCCAATCACC
GACAAATTCTGCTATTTAGGAACTTTCATCTCAAGAAATTGTAAAGATGA
ACTTGAAGTTAACCATAGAATTCGTAAAGCAGGTAATACTTTTGGCTCTT
TGAGAAAATCGCTCTTCTCAAACCGCTCGATATCGTACCAGGCAAAGAGT
TCTGCCTATCAATCGCTCATCCTTCCGATACTTCTACACGGTGCTGAAAC
CTGGTGTCTCACAGAGAAGCTTTTTAGATCCCTAAGAAACTTTCACCACA
TTTGCATCAGAGCCATGTGTCGAGTAAACCGTACACAAGTTTTTACCCAC
AGGATTAGCACCGAAAGCCTCCT Run BLAST on NCBI protein sequence of TCONS_00054878-protein >TCONS_00054878-protein ID=TCONS_00054878-protein|Name=TCONS_00054878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
TRLSSNRARQARNDLKNAISLTKSEWISRICNDLNISVAREKGTKTFWDC
IKSIKRGLHRPIPSSPVMMCKADGTKCRSSEENAEVFRNHFQTLYNRPSV
FDSNILDSLDQCPIDDSLGFVSSTDEVYNAINHLKNNAPGETGITAQMLK
SIAQDSVCFDYLYQIIIVIWTNEECPAQLDIGRLVILPKKGDLSKPGNYR
GIMLLEIAYKIVAIVINKRLQPLIEQLDHENQCGFRRGRGCADAVFTVKM
AIKKRREHNLETWILFLDLVKAFDRVPRPLLWCILSKFGVAKKLIDVLKL
LHKNFQVTFDVESVAHTMPCTIGVKQGDVLGPALFIIFIAAVMITWRKIH
DRPLCIFRTKNDYNLTGRRYNSKGTDFDVDDSEYADDTAVLFESRRDIEC
YSPLLVEHFDRFGMEIHVGDYNTPDKPSKTEILFVSRPLKTTLTPNLSTI
PTLRTSTLEIKNSSQSPTNSAI Run BLAST on NCBI transcript from alignment at scaffold_245:709772..711494 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054878 ID=TCONS_00054878|Name=TCONS_00054878|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at scaffold_245:709772..711494 (Clytia hemisphaerica)
AGGAGGCTTTCGGTGCTAATCCTGTGGGTAAAAACTTGTGTACGGTTTAC
TCGACACATGGCTCTGATGCAAATGTGGTGAAAGTTTCTTAGGGATCTAA
AAAGCTTCTCTGTGAGACACCAGGTTTCAGCACCGTGTAGAAGTATCGGA
AGGATGAGCGATTGATAGGCAGAACTCTTTGCCTGGTACGATATCGAGCG
GTTTGAGAAGAGCGATTTTCTCAAAGAGCCAAAAGTATTACCTGCTTTAC
GAATTCTATGGTTAACTTCAAGTTCATCTTTACAATTTCTTGAGATGAAA
GTTCCTAAATAGCAGAATTTGTCGGTGATTGGGaagaatttttgatttcc
aaggTCGATGTTCGTAAGGTCGGTATTGTCGAAAGATTCGGGGTCAGTGT
AGTTTTTAGAGGTCTGCTAACGAAAAGAATTTCTGTTTTCGATGGTTTAT
CAGGCGTATTATAATCTCCAACATGAATCTCCATTCCAAAACGGTCAAAA
TGTTCAACTAAAAGTGGTGAGTAGCATTCGATGTCTCTTCGGGATTCGAA
GAGAACTGCGGTATCATCTGCATACTCAGAGTCATCAACATCAAAGTCAG
TTCCTTTAGAATTATATCGTCTGCCTGTGAGATTGTAATCATTTTTTGTT
CTAAAGATACAGAGTGGGCGATCGTGGATTTTCCTCCATGTAATCATAAC
AGCGGctatgaaaatgataaataatgCTGGCCCGAGTACATCACCTTGCT
TCACACCGATAGTACAAGGCATGGTATGGGCAACAGATTCAACATCAAAA
GTAACTTGGAAGTTTTTATGTAGCAATTTTAAGACATCAATCAATTTCTT
AGCGACACCAAATTTGGATAAAATGCACCATAAGAGTGGACGAGGAACCC
TGTCAAAAGCCTTGACCaggtccaaaaataaaatcCATGTTTCAAGGTTA
TGCTCACGACGTTTCTTGATAGCCATTTTTACAGTAAAAACAGCGTCGGC
ACAGCCACGACCCCTTCTGAAACCAcattgattttcgtgatcgaGCTGTT
CAATGAGCGGTTGAAGTCTCTTATTAATAACGATGGCCACAATTTTATAG
GCAATCTCTAACAGCATGATGCCTCTGTAATTTCCAGGTTTACTGAGATC
ACCTTTCTTTGGTAATATTACGAGACGACCGATATCCAATTGAGCTGGAC
ATTCTTCATTTGTCCATATAACGATTATAATTTGGTATaagtaatcaaaa
caaacactatCTTGAGCAATTGATTTGAGCATTTGAGCAGTAATTCCTGT
TTCACCAGGAGCATTGTTTTTGAGGTGGTTTATAGCGTTGTATACTTCAT
CAGTAGATGACACGAAGCCCAACGAATCATCAATCGGACACTGGTCTAGG
GAGTCAAGGATGTTTGAGTCGAAGACTGAAGGTCGATTGTAGAGGGTTTG
AAAGTGATTACGAAAGACTTCTGCATTTTCTTCTGATGATCGACATTTTG
TACCGTCTGCTTTACACATCATAACTGGAGATGATGGGATTGGTCTGTGA
AGTCCGCGTTTAATCGATTTGATACAGTCCCAAAAGGTTTTTGTACCTTT
TTCTCTTGCAACAGATATATTTAAGTCATTGCATATTCTGGAGATCCATT
CACTTTTGGTGAGAGAGATAGCATTTTTCAAATCATTACGTGCTTGACGT
GCACGGTTAGAAGACAGACGGGT Coding sequence (CDS) from alignment at scaffold_245:709772..711494 >TCONS_00054878 ID=TCONS_00054878|Name=TCONS_00054878|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_245:709772..711494 (Clytia hemisphaerica)
CTAAATAGCAGAATTTGTCGGTGATTGGGaagaatttttgatttccaagg
TCGATGTTCGTAAGGTCGGTATTGTCGAAAGATTCGGGGTCAGTGTAGTT
TTTAGAGGTCTGCTAACGAAAAGAATTTCTGTTTTCGATGGTTTATCAGG
CGTATTATAATCTCCAACATGAATCTCCATTCCAAAACGGTCAAAATGTT
CAACTAAAAGTGGTGAGTAGCATTCGATGTCTCTTCGGGATTCGAAGAGA
ACTGCGGTATCATCTGCATACTCAGAGTCATCAACATCAAAGTCAGTTCC
TTTAGAATTATATCGTCTGCCTGTGAGATTGTAATCATTTTTTGTTCTAA
AGATACAGAGTGGGCGATCGTGGATTTTCCTCCATGTAATCATAACAGCG
GctatgaaaatgataaataatgCTGGCCCGAGTACATCACCTTGCTTCAC
ACCGATAGTACAAGGCATGGTATGGGCAACAGATTCAACATCAAAAGTAA
CTTGGAAGTTTTTATGTAGCAATTTTAAGACATCAATCAATTTCTTAGCG
ACACCAAATTTGGATAAAATGCACCATAAGAGTGGACGAGGAACCCTGTC
AAAAGCCTTGACCaggtccaaaaataaaatcCATGTTTCAAGGTTATGCT
CACGACGTTTCTTGATAGCCATTTTTACAGTAAAAACAGCGTCGGCACAG
CCACGACCCCTTCTGAAACCAcattgattttcgtgatcgaGCTGTTCAAT
GAGCGGTTGAAGTCTCTTATTAATAACGATGGCCACAATTTTATAGGCAA
TCTCTAACAGCATGATGCCTCTGTAATTTCCAGGTTTACTGAGATCACCT
TTCTTTGGTAATATTACGAGACGACCGATATCCAATTGAGCTGGACATTC
TTCATTTGTCCATATAACGATTATAATTTGGTATaagtaatcaaaacaaa
cactatCTTGAGCAATTGATTTGAGCATTTGAGCAGTAATTCCTGTTTCA
CCAGGAGCATTGTTTTTGAGGTGGTTTATAGCGTTGTATACTTCATCAGT
AGATGACACGAAGCCCAACGAATCATCAATCGGACACTGGTCTAGGGAGT
CAAGGATGTTTGAGTCGAAGACTGAAGGTCGATTGTAGAGGGTTTGAAAG
TGATTACGAAAGACTTCTGCATTTTCTTCTGATGATCGACATTTTGTACC
GTCTGCTTTACACATCATAACTGGAGATGATGGGATTGGTCTGTGAAGTC
CGCGTTTAATCGATTTGATACAGTCCCAAAAGGTTTTTGTACCTTTTTCT
CTTGCAACAGATATATTTAAGTCATTGCATATTCTGGAGATCCATTCACT
TTTGGTGAGAGAGATAGCATTTTTCAAATCATTACGTGCTTGACGTGCAC
GGTTAGAAGACAGACGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054878-exon-scaffold_245-1491911889:709772..711494 | TCONS_00054878-exon-scaffold_245-1491911889:709772..711494 | Clytia hemisphaerica | exon |
| TCONS_00054878-exon-scaffold_245-1510915933:709772..711494 | TCONS_00054878-exon-scaffold_245-1510915933:709772..711494 | Clytia hemisphaerica | exon |
| TCONS_00054878-exon-scaffold_245-1575043694:709772..711494 | TCONS_00054878-exon-scaffold_245-1575043694:709772..711494 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:709772..711494 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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