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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054880 ID=TCONS_00054880|Name=TCONS_00054880|organism=Clytia hemisphaerica|type=transcript|length=720bp
AGCCATCTACCAATCTGTAAACAATAGAATCTTCTGAACTCTTTGACATG
TCCCCAGTACACGAAAACATTGataaaactattaaaaaaaGTCACGTCCA
TTAAAATGACTGTGATTTCAACGATAAGAGCATTGTGATTCCCTTCGATA
ATGAAAACCACGTAAAGAATTGTTAAAATCACACTTGGTGCAAATACGGT
AACCGAAGCAACCACTGTCATACATTTCAGATTCGCCAGTGCTCTTTTGT
TTCTCGCATTAATTCGTTTTTCATGAACCTTTGATATCACATCTtgacag
ttttgatttttcaaatatttcgaaATGTTTGTGTTGAAGTGAAGGATCAG
AATTATGGGTAGAATGCAAATAGCAACAGCATGGATGATATATAATGATA
CCACTATTTCTATTGAGGGAGCTTGTCCCGCCTTACATAAACAATTTTCT
TTATCCATATATCTCATTTCATCAAATGGGATGTAGAGAAGATAGCCAGT
GATACCTGGTACTATACAAATGAAGTGAATTGACCATTTTGGGAGCTGTT
TTGCAAAAGGtttggtgattttttgaaaacgGTCAAATGAGAGTGCACAT
AATATCCAAATGGAGGCTGTGGATAACCCTAAAGGGAGAAGCCACAATTT
TGTACATACTTCAGTTGCAAACTCGCTTGCTGGTGCAAAAGAGGTTGAGA
CTACCACAAAAAGCCTTGAG Run BLAST on NCBI protein sequence of TCONS_00054880-protein >TCONS_00054880-protein ID=TCONS_00054880-protein|Name=TCONS_00054880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
SRLFVVVSTSFAPASEFATEVCTKLWLLPLGLSTASIWILCALSFDRFQK
ITKPFAKQLPKWSIHFICIVPGITGYLLYIPFDEMRYMDKENCLCKAGQA
PSIEIVVSLYIIHAVAICILPIILILHFNTNISKYLKNQNCQDVISKVHE
KRINARNKRALANLKCMTVVASVTVFAPSVILTILYVVFIIEGNHNALIV
EITVILMDVTFFNSFINVFVYWGHVKEFRRFYCLQIGRW Run BLAST on NCBI transcript from alignment at scaffold_245:715031..715750 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054880 ID=TCONS_00054880|Name=TCONS_00054880|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_245:715031..715750 (Clytia hemisphaerica)
CTCAAGGCTTTTTGTGGTAGTCTCAACCTCTTTTGCACCAGCAAGCGAGT
TTGCAACTGAAGTATGTACAAAATTGTGGCTTCTCCCTTTAGGGTTATCC
ACAGCCTCCATTTGGATATTATGTGCACTCTCATTTGACcgttttcaaaa
aatcaccaaaCCTTTTGCAAAACAGCTCCCAAAATGGTCAATTCACTTCA
TTTGTATAGTACCAGGTATCACTGGCTATCTTCTCTACATCCCATTTGAT
GAAATGAGATATATGGATAAAGAAAATTGTTTATGTAAGGCGGGACAAGC
TCCCTCAATAGAAATAGTGGTATCATTATATATCATCCATGCTGTTGCTA
TTTGCATTCTACCCATAATTCTGATCCTTCACTTCAACACAAACATttcg
aaatatttgaaaaatcaaaactgtcaAGATGTGATATCAAAGGTTCATGA
AAAACGAATTAATGCGAGAAACAAAAGAGCACTGGCGAATCTGAAATGTA
TGACAGTGGTTGCTTCGGTTACCGTATTTGCACCAAGTGTGATTTTAACA
ATTCTTTACGTGGTTTTCATTATCGAAGGGAATCACAATGCTCTTATCGT
TGAAATCACAGTCATTTTAATGGACGTGACtttttttaatagttttatCA
ATGTTTTCGTGTACTGGGGACATGTCAAAGAGTTCAGAAGATTCTATTGT
TTACAGATTGGTAGATGGCT Coding sequence (CDS) from alignment at scaffold_245:715031..715750 >TCONS_00054880 ID=TCONS_00054880|Name=TCONS_00054880|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_245:715031..715750 (Clytia hemisphaerica)
TCAAGGCTTTTTGTGGTAGTCTCAACCTCTTTTGCACCAGCAAGCGAGTT
TGCAACTGAAGTATGTACAAAATTGTGGCTTCTCCCTTTAGGGTTATCCA
CAGCCTCCATTTGGATATTATGTGCACTCTCATTTGACcgttttcaaaaa
atcaccaaaCCTTTTGCAAAACAGCTCCCAAAATGGTCAATTCACTTCAT
TTGTATAGTACCAGGTATCACTGGCTATCTTCTCTACATCCCATTTGATG
AAATGAGATATATGGATAAAGAAAATTGTTTATGTAAGGCGGGACAAGCT
CCCTCAATAGAAATAGTGGTATCATTATATATCATCCATGCTGTTGCTAT
TTGCATTCTACCCATAATTCTGATCCTTCACTTCAACACAAACATttcga
aatatttgaaaaatcaaaactgtcaAGATGTGATATCAAAGGTTCATGAA
AAACGAATTAATGCGAGAAACAAAAGAGCACTGGCGAATCTGAAATGTAT
GACAGTGGTTGCTTCGGTTACCGTATTTGCACCAAGTGTGATTTTAACAA
TTCTTTACGTGGTTTTCATTATCGAAGGGAATCACAATGCTCTTATCGTT
GAAATCACAGTCATTTTAATGGACGTGACtttttttaatagttttatCAA
TGTTTTCGTGTACTGGGGACATGTCAAAGAGTTCAGAAGATTCTATTGTT
TACAGATTGGTAGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054880-exon-scaffold_245-1491911889:715031..715750 | TCONS_00054880-exon-scaffold_245-1491911889:715031..715750 | Clytia hemisphaerica | exon |
| TCONS_00054880-exon-scaffold_245-1510915933:715031..715750 | TCONS_00054880-exon-scaffold_245-1510915933:715031..715750 | Clytia hemisphaerica | exon |
| TCONS_00054880-exon-scaffold_245-1575043694:715031..715750 | TCONS_00054880-exon-scaffold_245-1575043694:715031..715750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:715031..715750 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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