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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054883 ID=TCONS_00054883|Name=TCONS_00054883|organism=Clytia hemisphaerica|type=transcript|length=1013bp
TGAAAACCCTTATGTCTACAAATGCTAATTGCCCCTTCACCCAGAAGTCT
TTGACTGCGACATCCGTTCTCGATCCTTCCGTCTTGATGGCTGTCTTGTA
TGTCATCCGTTCGCCAGTCAATGGAGTAAGTGTAGGTTCGACTATAACAT
GGTTGCTGATTTCTTTTGCGATCTCGGCGGTAAGATCACGAAGCTCGTTG
TGTCGGGAGATGATGAAACCGCCCCTAGGACAGTTCATTGCGTGTTGGAT
GTAGAAAGCCAAACCACAGACACATGTTGTTGGTAGACGCCTCAACGGGA
TGTTATAGCGAATAAAGATTGCATCCCAGAAGGCTTGTTTCTTAAGATAG
AATCCATTTGACTTGATTGGCAGAGCTGTCAACCAAAGGGAAGCACCCTT
CTCCGTAGAAGCTTCAATCGATTTTAGCTTCAATTGGCATTGAATCTCTT
CTTTGATGTCATCAAGTTGTTTTTGGTTGTCCCTCCGTTTGTCTGCCCTG
ATCGCTATTTTGATCTTCATTTGCTCTTTGGCATCTTCCTCATACACTTT
TTGGTGATCTTTTAGCTTTTCTCTTGAAGAACGAGTCACTTTGATGGAAT
TTATGTACTCTCGTTCGCACATCTCTGACGGAATGATAAGTCCCATCCCA
CCAAATCTTGGTGGAAGGGAGAGCAGTTTACGATCCAGAGAGTTGAACTC
ATGCCCTTGGAAGAGAGTCTTGATCAATGCATCGATGGCTTCATCTAGAG
GTTTAAGGTGTTCTGATATGTTTGGTGTCGTCCTCATGATATATACATAT
CTGTGTCGTAGACCATGGATAAACGCAGCGAAGGCAAGATGTGGTTGAGT
CTTTGCGATATGTTGAAGAAGGTGGAGTTCTGATACCCACTCNAAGGCAA
GATGTGGTTGAGTCTTCGCGATATCTTGAAGAAGGTGGAGTTCTGATACC
CACTCCTCGACTTTCTTCTCCATAAAGGCGTCTTTTGTTGGTTCATCACT
GATGATAGTGCCA Run BLAST on NCBI protein sequence of TCONS_00054883-protein >TCONS_00054883-protein ID=TCONS_00054883-protein|Name=TCONS_00054883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
GTIISDEPTKDAFMEKKVEEWVSELHLLQDIAKTQPHLAXEWVSELHLLQ
HIAKTQPHLAFAAFIHGLRHRYVYIMRTTPNISEHLKPLDEAIDALIKTL
FQGHEFNSLDRKLLSLPPRFGGMGLIIPSEMCEREYINSIKVTRSSREKL
KDHQKVYEEDAKEQMKIKIAIRADKRRDNQKQLDDIKEEIQCQLKLKSIE
ASTEKGASLWLTALPIKSNGFYLKKQAFWDAIFIRYNIPLRRLPTTCVCG
LAFYIQHAMNCPRGGFIISRHNELRDLTAEIAKEISNHVIVEPTLTPLTG
ERMTYKTAIKTEGSRTDVAVKDFWVKGQLAFVDIRVF Run BLAST on NCBI transcript from alignment at scaffold_245:829722..830734 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054883 ID=TCONS_00054883|Name=TCONS_00054883|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at scaffold_245:829722..830734 (Clytia hemisphaerica)
TGGCACTATCATCAGTGATGAACCAACAAAAGACGCCTTTATGGAGAAGA
AAGTCGAGGAGTGGGTATCAGAACTCCACCTTCTTCAAGATATCGCGAAG
ACTCAACCACATCTTGCCTTNGAGTGGGTATCAGAACTCCACCTTCTTCA
ACATATCGCAAAGACTCAACCACATCTTGCCTTCGCTGCGTTTATCCATG
GTCTACGACACAGATATGTATATATCATGAGGACGACACCAAACATATCA
GAACACCTTAAACCTCTAGATGAAGCCATCGATGCATTGATCAAGACTCT
CTTCCAAGGGCATGAGTTCAACTCTCTGGATCGTAAACTGCTCTCCCTTC
CACCAAGATTTGGTGGGATGGGACTTATCATTCCGTCAGAGATGTGCGAA
CGAGAGTACATAAATTCCATCAAAGTGACTCGTTCTTCAAGAGAAAAGCT
AAAAGATCACCAAAAAGTGTATGAGGAAGATGCCAAAGAGCAAATGAAGA
TCAAAATAGCGATCAGGGCAGACAAACGGAGGGACAACCAAAAACAACTT
GATGACATCAAAGAAGAGATTCAATGCCAATTGAAGCTAAAATCGATTGA
AGCTTCTACGGAGAAGGGTGCTTCCCTTTGGTTGACAGCTCTGCCAATCA
AGTCAAATGGATTCTATCTTAAGAAACAAGCCTTCTGGGATGCAATCTTT
ATTCGCTATAACATCCCGTTGAGGCGTCTACCAACAACATGTGTCTGTGG
TTTGGCTTTCTACATCCAACACGCAATGAACTGTCCTAGGGGCGGTTTCA
TCATCTCCCGACACAACGAGCTTCGTGATCTTACCGCCGAGATCGCAAAA
GAAATCAGCAACCATGTTATAGTCGAACCTACACTTACTCCATTGACTGG
CGAACGGATGACATACAAGACAGCCATCAAGACGGAAGGATCGAGAACGG
ATGTCGCAGTCAAAGACTTCTGGGTGAAGGGGCAATTAGCATTTGTAGAC
ATAAGGGTTTTCA Coding sequence (CDS) from alignment at scaffold_245:829722..830734 >TCONS_00054883 ID=TCONS_00054883|Name=TCONS_00054883|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_245:829722..830734 (Clytia hemisphaerica)
GGCACTATCATCAGTGATGAACCAACAAAAGACGCCTTTATGGAGAAGAA
AGTCGAGGAGTGGGTATCAGAACTCCACCTTCTTCAAGATATCGCGAAGA
CTCAACCACATCTTGCCTTNGAGTGGGTATCAGAACTCCACCTTCTTCAA
CATATCGCAAAGACTCAACCACATCTTGCCTTCGCTGCGTTTATCCATGG
TCTACGACACAGATATGTATATATCATGAGGACGACACCAAACATATCAG
AACACCTTAAACCTCTAGATGAAGCCATCGATGCATTGATCAAGACTCTC
TTCCAAGGGCATGAGTTCAACTCTCTGGATCGTAAACTGCTCTCCCTTCC
ACCAAGATTTGGTGGGATGGGACTTATCATTCCGTCAGAGATGTGCGAAC
GAGAGTACATAAATTCCATCAAAGTGACTCGTTCTTCAAGAGAAAAGCTA
AAAGATCACCAAAAAGTGTATGAGGAAGATGCCAAAGAGCAAATGAAGAT
CAAAATAGCGATCAGGGCAGACAAACGGAGGGACAACCAAAAACAACTTG
ATGACATCAAAGAAGAGATTCAATGCCAATTGAAGCTAAAATCGATTGAA
GCTTCTACGGAGAAGGGTGCTTCCCTTTGGTTGACAGCTCTGCCAATCAA
GTCAAATGGATTCTATCTTAAGAAACAAGCCTTCTGGGATGCAATCTTTA
TTCGCTATAACATCCCGTTGAGGCGTCTACCAACAACATGTGTCTGTGGT
TTGGCTTTCTACATCCAACACGCAATGAACTGTCCTAGGGGCGGTTTCAT
CATCTCCCGACACAACGAGCTTCGTGATCTTACCGCCGAGATCGCAAAAG
AAATCAGCAACCATGTTATAGTCGAACCTACACTTACTCCATTGACTGGC
GAACGGATGACATACAAGACAGCCATCAAGACGGAAGGATCGAGAACGGA
TGTCGCAGTCAAAGACTTCTGGGTGAAGGGGCAATTAGCATTTGTAGACA
TAAGGGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054883-exon-scaffold_245-1491911889:829722..830734 | TCONS_00054883-exon-scaffold_245-1491911889:829722..830734 | Clytia hemisphaerica | exon |
| TCONS_00054883-exon-scaffold_245-1510915933:829722..830734 | TCONS_00054883-exon-scaffold_245-1510915933:829722..830734 | Clytia hemisphaerica | exon |
| TCONS_00054883-exon-scaffold_245-1575043694:829722..830734 | TCONS_00054883-exon-scaffold_245-1575043694:829722..830734 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:829722..830734 . |
Blast
The following BLAST results are available for this feature:
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