TCONS_00054893 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054893
Unique Name	TCONS_00054893
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1326

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_246:79028..82316+
coding sequence from alignment at scaffold_246:79028..82316+

transcript sequence

>TCONS_00054893 ID=TCONS_00054893|Name=TCONS_00054893|organism=Clytia hemisphaerica|type=transcript|length=1326bp
NNGGTTTCATCACACTTGCTGCACCAGAAGTTTTCCACAGTCCTGATGAT
TTGAATGTTGGAATTTATGGTTTGGAAGGATCGAAACCTGGAGCTGCAGC
CTGTGGCGTTCTTTTGTCTCACCGGGTCGTTGGATTGGATCAAAACGGTT
ACGGTCGTATTCTTGGCCAATGTCAACTTGGTGCAAAACTTTTCTACAGC
ATGTGGGAAACAGTCGCCAGAGATGATGATCCTTTCATTTGCTGCAACTT
CATTCCACTCGATTTGAAAGAATTACAAGAAAAAGGATTCTCGTTCAAAA
CACAACAAGATGTCCATGACTACATCAAGAAACATATTATCGGTAAACCA
AATGAACAACTTGTCAAGAATGTTCACAAAGAAATCGATTTCTTGGGAAT
CGTTGGTCCTGACGCTTTGATCAATTCGTTCACCGTCAACTGTAAGGGTC
AAAGCACTGGTAAAGGTCAACAAAATATCGAGTTGGTCAACGATTTGCAA
AATCTTGTCTTCAATGAATTAACTTCGAGTGTTGGCGAAGACACTAAACG
GGTCAAGATGTTTTTGACAACCTCAAAACTGGAATATGCAAATTATGGGA
AATCCGTCCAACAATTGAAGGAGAGATTGAATTTACCGACCGAAAATACC
CATGATGCACTTGGATTCTCGCTTGGATTCTTGAGGAACACTTGTATGGA
ACCATATCAAGCAAGCGAAGCTTATGTGGAAGTTCTTGGTGATTTATTCA
GAAAGACTGTTCTCACTTGCATTGGTGCTctgGACACTTCATACGGAGAA
GAATATGGAGATTCTTTGGATTATCACACCTTCACTGTTGTCAACAATCT
TCGAAAAGATGGAAAAATCTTCTTGGATTTCGTTCCCACATTCACCATCA
AGAAGATCAAGCAACCTTCAGGGAGATTCAATCAAAAGCAACCGAACTAC
TCTTCTTGAGAACAACTGAGAAAGTCAACCTTTTCCATTTCGTCAAAAAT
AATTTGGATGCAACAAGAACAATGGCTCTTTACCAAGGAGCGAAGACTTC
GAACACGTGTTTGGCGAGCATTCGACTTCACATTGACGAAGTTTGGAGAA
TGGAACGTTTTGAATCACCACAATATGCAGAATACAACgaacttcaaaaa
tattttttattcggaGATGAAGAAGAGGCTTTCATGTCGCATGTCGTCAC
CAAACAACCAGATTTTTACCACAATcaaggacaaaatacttggcacaaaa
gggaaattcaccggggtgttttgaaaccacaatcgatttgtaagtgctct
aaagtaggttcgaagggtagagtttt

Run BLAST on NCBI

protein sequence of TCONS_00054893-protein

>TCONS_00054893-protein ID=TCONS_00054893-protein|Name=TCONS_00054893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
GFITLAAPEVFHSPDDLNVGIYGLEGSKPGAAACGVLLSHRVVGLDQNGY
GRILGQCQLGAKLFYSMWETVARDDDPFICCNFIPLDLKELQEKGFSFKT
QQDVHDYIKKHIIGKPNEQLVKNVHKEIDFLGIVGPDALINSFTVNCKGQ
STGKGQQNIELVNDLQNLVFNELTSSVGEDTKRVKMFLTTSKLEYANYGK
SVQQLKERLNLPTENTHDALGFSLGFLRNTCMEPYQASEAYVEVLGDLFR
KTVLTCIGALDTSYGEEYGDSLDYHTFTVVNNLRKDGKIFLDFVPTFTIK
KIKQPSGRFNQKQPNYSS

Run BLAST on NCBI

transcript from alignment at scaffold_246:79028..82316+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054893 ID=TCONS_00054893|Name=TCONS_00054893|organism=Clytia hemisphaerica|type=transcript|length=3289bp|location=Sequence derived from alignment at scaffold_246:79028..82316+ (Clytia hemisphaerica)
NNGGTTTCATCACACTTGCTGCACCAGAAGTTTTCCACAGTCCTGATGAT
TTGAATGTTGGAATTTATGGTTTGGAAGGATCGAAACCTGGAGCTGCAGC
CTGTGGCGTTCTTTTGTCTCACCGGGTAAGATCATCAATACACCCCCTCT
CACAGACCCtgtagaattttttcagccagtggggataaaaataacggaat
gAAATTCATGGCTGGGGATATATTCATATTCTtctgttttcaagtcagaa
aattgggtggcgatgggaaaaatagcataatatatTCCAGTAtgattgat
ttatttgattaaattcagtggggacaaaagttgtaggataattttccacc
tagggcgatattttggccaattttttcagtgggatGGGTTCTCAGTGTGT
CTGTGATAAGGGGGTGTAATAATCCAAAAGTACCCTCAGTAATCAAGCGA
GAAAATGTTTGAATAATTTGAGAAACCAACAAATCTGGCCGACCAAAAAG
ACAATTTGAGATGTCTTCAGTGGAAGAAGCACTAATGTTTCCCGAATTTT
TGTCTTAGTGCTTTATATCGTCGAGGGAACCCTTTAGGATTGTTATGGGT
AAGGACGATAGTATTCTCACAGAACGGCAATCCCAATTTTATAATCAGGT
CTAGTTTGGGTTCCAAATATTCAAAGGGAGAAATAAATGAAAAGAACTAT
ATTATTTTAACGTAAGCACACTTATGATCACAAGAAAAATGGTTCTAGAG
ACATAGTTCGACTCTCTAGGTCGTTGGATTGGATCAAAACGGTTACGGTC
GTATTCTTGGCCAATGTCAACTTGGTGCAAAACTTTTCTACAGCATGTGG
GAAACAGTCGCCAGAGATGATGATCCTTTCATTTGCTGCAACTTCATTCC
ACTCGATTTGAAAGAATTACAAGAAAAAGGATTCTCGTTCAAAACACAAC
AAGATGTCCATGACTACATCAAGAAACATATTATCGGTAAACCAAATGAA
CAACTTGTCAAGAATGTTCACAAAGAAATCGATTTCTTGGGAATCGTTGG
TCCTGACGCTTTGATCAATTCGTTCACCGTCAACTGTAAGGGTCAAAGCA
CTGGTAAAGGTCAACAAAATATCGAGTTGGTCAACGATTTGCAAAATCTT
GTCTTCAATGAATTAACTTGTAAGTGTTTCAGTCTAGTCCCCtatctttc
aaattctaaaATGCACATTTTCTTTATTACTGTCATTTGAAGTTATCTAG
GACTGAAACTTTTCACGGTATGTTAAACCGTGACGGGTGTTAACCTGTGA
AGATAATTCACATTCCACTAAGTGTATTTGCTATTCTTTCAGCGAGTGTT
GGCGAAGACACTAAACGGGTCAAGATGTTTTTGACAACCTCAAAACTGGA
ATATGCAAATTATGGGAAATCCGTCCAACAATTGAAGGAGAGATTGAATT
TACCGACCGAAAATACCCATGATGCACTTGGATTCTCGCTTGGATTCTTG
AGGAACACTTGTATGGAACCATATCAAGCAAGCGAAGCTTATGTGGAAGT
TCTTGGTGATTTATTCAGAAAGACTGTTCTCACTTGCATTGGTGCTGTAA
GTATCAGATATTTATCTTAGCATCCCCATGAACTATTAAGGTTAATtcct
aaaaaaaacgttttgtaCCTTACATGAGGCTTAAACAGAAATATTTTGCA
CTACACTACCTTTTTTACTAGTgaggaaaatgagaaaattaatCCATGAC
CGTTGATTAGTCCTTGGTCAAACGGAAGTCAAACAATTGCTAAAAGATTt
agatttcaaaatgaaaaaaatagatttAACGCTTTTTGAGATGGGTAATG
GCTTTTTTGAAGTAACATAACGCTTATTTTCTCTCATATACCACAGTAAC
AAATCATAGATAAATCTCTATTATGAATCGTTTAACCTTCCTGATTTCTC
TTATATTgtgatttgatttttaaaaaaattttcttttttagctgGACACT
TCATACGGAGAAGAATATGGAGATTCTTTGGATTATCACACCTTCACTGT
TGTCAACAATCTTCGAAAAGATGGAAAAATCTTCTTGGATTTCGTTCCCA
CATTCACCATCAAGAAGATCAAGCAACCTTCAGGTAGGTGTTTGTTACAA
TTTTCCCGCTGATATCCGTCTTCATAGCTTTAATATTTTCATAAGCAGcc
gccggcagatttttttgaaatattctttttttccaggattAAAtacatct
gttcttaaaatccaggagcacattttaaggaaaaacacatacaataTTTC
CCAGCGaacaatctgttcaaaaaattCAGGAGCTAAgttgtgaaaaacac
aaccagatgccatagattttttccagggagcttcgtaattttcttaaaag
gtctattttctagaagcattttaactttcttagggaatggctgttatatt
tttccaggagcataatacTTCTAGAGAAcatatacattttccaggagtcc
cattttttcccaaaacagatgatataatccaggaaagcccaggatacaga
acagatagttttttccaggagaaagggacctcaagaaccGATATTCCATA
gttcctagccggtggctgctcttgtattttttattctCACCGAGATTACG
TACTGAAGGCTTCAAACTTCTGGAAAACAGGAAATGTAATAGATTTTTGT
CTTTTATCTTATTTTCAGGGAGATTCAATCAAAAGCAACCGAACTACTCT
TCTTGAGAACAACTGAGAAAGTCAACCTTTTCCATTTCGTCAAAAATAAT
TTGGATGCAACAAGAACAATGGCTCTTTACCAAGGTAAATACCGAATAAA
AATGGACTTTTATCAATCAGCAAAATGAAGCTGGAATAACAACTGTTGTT
TCTTTTCTTATATTGGGTTGTTTGTCGATCTACCAACAAATTCAATCCTT
TACTGTTAGGATTTAACATTCCTTTAATGAAATCTGAAATATTTCTTCAG
GAGCGAAGACTTCGAACACGTGTTTGGCGAGCATTCGACTTCACATTGAC
GAAGTTTGGAGAATGGAACGTTTTGAATCACCACAATATGCAGAATACAA
CgaacttcaaaaatattttttattcggaGATGAAGAAGAGGCTTTCATGT
CGCATGTCGTCACCAAACAACCAGATTTTTACCACAATcaaggacaaaat
acttggcacaaaagggaaattcaccggggtgttttgaaaccacaatcgat
ttgtaagtgctctaaagtaggttcgaagggtagagtttt

Coding sequence (CDS) from alignment at scaffold_246:79028..82316+

>TCONS_00054893 ID=TCONS_00054893|Name=TCONS_00054893|organism=Clytia hemisphaerica|type=CDS|length=4785bp|location=Sequence derived from alignment at scaffold_246:79028..82316+ (Clytia hemisphaerica)
GGTTTCATCACACTTGCTGCACCAGAAGTTTTCCACAGTCCTGATGATTT
GAATGTTGGAATTTATGGTTTGGAAGGATCGAAACCTGGAGCTGCAGCCT
GTGGCGTTCTTTTGTCTCACCGGGTCGTTGGATTGGATCAAAACGGTTAC
GGTCGTATTCTTGGCCAATGTCAACTTGGTGCAAAACTTTTCTACAGCAT
GTGGGAAACAGTCGCCAGAGATGATGATCCTTTCATTTGCTGCAACTTCA
TTCCACTCGATTTGAAAGAATTACAAGAAAAAGGATTCTCGTTCAAAACA
CAACAAGATGTCCATGACTACATCAAGAAACATATTATCGGTAAACCAAA
TGAACAACTTGTCAAGAATGTTCACAAAGAAATCGATTTCTTGGGAATCG
TTGGTCCTGACGCTTTGATCAATTCGTTCACCGTCAACTGTAAGGGTCAA
AGCACTGGTAAAGGTCAACAAAATATCGAGTTGGTCAACGATTTGCAAAA
TCTTGTCTTCAATGAATTAACTTCGAGTGTTGGCGAAGACACTAAACGGG
TCAAGATGTTTTTGACAACCTCAAAACTGGAATATGCAAATTATGGGAAA
TCCGTCCAACAATTGAAGGAGAGATTGAATTTACCGACCGAAAATACCCA
TGATGCACTTGGATTCTCGCTTGGATTCTTGAGGAACACTTGTATGGAAC
CATATCAAGCAAGCGAAGCTTATGTGGAAGTTCTTGGTGATTTATTCAGA
AAGACTGTTCTCACTTGCATTGGTGCTctgGACACTTCATACGGAGAAGA
ATATGGAGATTCTTTGGATTATCACACCTTCACTGTTGTCAACAATCTTC
GAAAAGATGGAAAAATCTTCTTGGATTTCGTTCCCACATTCACCATCAAG
AAGATCAAGCAACCTTCAGGGAGATTCAATCAAAAGCAACCGAACTACTC
TTCTTGAGGTTTCATCACACTTGCTGCACCAGAAGTTTTCCACAGTCCTG
ATGATTTGAATGTTGGAATTTATGGTTTGGAAGGATCGAAACCTGGAGCT
GCAGCCTGTGGCGTTCTTTTGTCTCACCGGGTCGTTGGATTGGATCAAAA
CGGTTACGGTCGTATTCTTGGCCAATGTCAACTTGGTGCAAAACTTTTCT
ACAGCATGTGGGAAACAGTCGCCAGAGATGATGATCCTTTCATTTGCTGC
AACTTCATTCCACTCGATTTGAAAGAATTACAAGAAAAAGGATTCTCGTT
CAAAACACAACAAGATGTCCATGACTACATCAAGAAACATATTATCGGTA
AACCAAATGAACAACTTGTCAAGAATGTTCACAAAGAAATCGATTTCTTG
GGAATCGTTGGTCCTGACGCTTTGATCAATTCGTTCACCGTCAACTGTAA
GGGTCAAAGCACTGGTAAAGGTCAACAAAATATCGAGTTGGTCAACGATT
TGCAAAATCTTGTCTTCAATGAATTAACTTCGAGTGTTGGCGAAGACACT
AAACGGGTCAAGATGTTTTTGACAACCTCAAAACTGGAATATGCAAATTA
TGGGAAATCCGTCCAACAATTGAAGGAGAGATTGAATTTACCGACCGAAA
ATACCCATGATGCACTTGGATTCTCGCTTGGATTCTTGAGGAACACTTGT
ATGGAACCATATCAAGCAAGCGAAGCTTATGTGGAAGTTCTTGGTGATTT
ATTCAGAAAGACTGTTCTCACTTGCATTGGTGCTctgGACACTTCATACG
GAGAAGAATATGGAGATTCTTTGGATTATCACACCTTCACTGTTGTCAAC
AATCTTCGAAAAGATGGAAAAATCTTCTTGGATTTCGTTCCCACATTCAC
CATCAAGAAGATCAAGCAACCTTCAGGGAGATTCAATCAAAAGCAACCGA
ACTACTCTTCTTGAGGTTTCATCACACTTGCTGCACCAGAAGTTTTCCAC
AGTCCTGATGATTTGAATGTTGGAATTTATGGTTTGGAAGGATCGAAACC
TGGAGCTGCAGCCTGTGGCGTTCTTTTGTCTCACCGGGTCGTTGGATTGG
ATCAAAACGGTTACGGTCGTATTCTTGGCCAATGTCAACTTGGTGCAAAA
CTTTTCTACAGCATGTGGGAAACAGTCGCCAGAGATGATGATCCTTTCAT
TTGCTGCAACTTCATTCCACTCGATTTGAAAGAATTACAAGAAAAAGGAT
TCTCGTTCAAAACACAACAAGATGTCCATGACTACATCAAGAAACATATT
ATCGGTAAACCAAATGAACAACTTGTCAAGAATGTTCACAAAGAAATCGA
TTTCTTGGGAATCGTTGGTCCTGACGCTTTGATCAATTCGTTCACCGTCA
ACTGTAAGGGTCAAAGCACTGGTAAAGGTCAACAAAATATCGAGTTGGTC
AACGATTTGCAAAATCTTGTCTTCAATGAATTAACTTCGAGTGTTGGCGA
AGACACTAAACGGGTCAAGATGTTTTTGACAACCTCAAAACTGGAATATG
CAAATTATGGGAAATCCGTCCAACAATTGAAGGAGAGATTGAATTTACCG
ACCGAAAATACCCATGATGCACTTGGATTCTCGCTTGGATTCTTGAGGAA
CACTTGTATGGAACCATATCAAGCAAGCGAAGCTTATGTGGAAGTTCTTG
GTGATTTATTCAGAAAGACTGTTCTCACTTGCATTGGTGCTctgGACACT
TCATACGGAGAAGAATATGGAGATTCTTTGGATTATCACACCTTCACTGT
TGTCAACAATCTTCGAAAAGATGGAAAAATCTTCTTGGATTTCGTTCCCA
CATTCACCATCAAGAAGATCAAGCAACCTTCAGGGAGATTCAATCAAAAG
CAACCGAACTACTCTTCTTGAGGTTTCATCACACTTGCTGCACCAGAAGT
TTTCCACAGTCCTGATGATTTGAATGTTGGAATTTATGGTTTGGAAGGAT
CGAAACCTGGAGCTGCAGCCTGTGGCGTTCTTTTGTCTCACCGGGTCGTT
GGATTGGATCAAAACGGTTACGGTCGTATTCTTGGCCAATGTCAACTTGG
TGCAAAACTTTTCTACAGCATGTGGGAAACAGTCGCCAGAGATGATGATC
CTTTCATTTGCTGCAACTTCATTCCACTCGATTTGAAAGAATTACAAGAA
AAAGGATTCTCGTTCAAAACACAACAAGATGTCCATGACTACATCAAGAA
ACATATTATCGGTAAACCAAATGAACAACTTGTCAAGAATGTTCACAAAG
AAATCGATTTCTTGGGAATCGTTGGTCCTGACGCTTTGATCAATTCGTTC
ACCGTCAACTGTAAGGGTCAAAGCACTGGTAAAGGTCAACAAAATATCGA
GTTGGTCAACGATTTGCAAAATCTTGTCTTCAATGAATTAACTTCGAGTG
TTGGCGAAGACACTAAACGGGTCAAGATGTTTTTGACAACCTCAAAACTG
GAATATGCAAATTATGGGAAATCCGTCCAACAATTGAAGGAGAGATTGAA
TTTACCGACCGAAAATACCCATGATGCACTTGGATTCTCGCTTGGATTCT
TGAGGAACACTTGTATGGAACCATATCAAGCAAGCGAAGCTTATGTGGAA
GTTCTTGGTGATTTATTCAGAAAGACTGTTCTCACTTGCATTGGTGCTct
gGACACTTCATACGGAGAAGAATATGGAGATTCTTTGGATTATCACACCT
TCACTGTTGTCAACAATCTTCGAAAAGATGGAAAAATCTTCTTGGATTTC
GTTCCCACATTCACCATCAAGAAGATCAAGCAACCTTCAGGGAGATTCAA
TCAAAAGCAACCGAACTACTCTTCTTGAGGTTTCATCACACTTGCTGCAC
CAGAAGTTTTCCACAGTCCTGATGATTTGAATGTTGGAATTTATGGTTTG
GAAGGATCGAAACCTGGAGCTGCAGCCTGTGGCGTTCTTTTGTCTCACCG
GGTCGTTGGATTGGATCAAAACGGTTACGGTCGTATTCTTGGCCAATGTC
AACTTGGTGCAAAACTTTTCTACAGCATGTGGGAAACAGTCGCCAGAGAT
GATGATCCTTTCATTTGCTGCAACTTCATTCCACTCGATTTGAAAGAATT
ACAAGAAAAAGGATTCTCGTTCAAAACACAACAAGATGTCCATGACTACA
TCAAGAAACATATTATCGGTAAACCAAATGAACAACTTGTCAAGAATGTT
CACAAAGAAATCGATTTCTTGGGAATCGTTGGTCCTGACGCTTTGATCAA
TTCGTTCACCGTCAACTGTAAGGGTCAAAGCACTGGTAAAGGTCAACAAA
ATATCGAGTTGGTCAACGATTTGCAAAATCTTGTCTTCAATGAATTAACT
TCGAGTGTTGGCGAAGACACTAAACGGGTCAAGATGTTTTTGACAACCTC
AAAACTGGAATATGCAAATTATGGGAAATCCGTCCAACAATTGAAGGAGA
GATTGAATTTACCGACCGAAAATACCCATGATGCACTTGGATTCTCGCTT
GGATTCTTGAGGAACACTTGTATGGAACCATATCAAGCAAGCGAAGCTTA
TGTGGAAGTTCTTGGTGATTTATTCAGAAAGACTGTTCTCACTTGCATTG
GTGCTctgGACACTTCATACGGAGAAGAATATGGAGATTCTTTGGATTAT
CACACCTTCACTGTTGTCAACAATCTTCGAAAAGATGGAAAAATCTTCTT
GGATTTCGTTCCCACATTCACCATCAAGAAGATCAAGCAACCTTCAGGGA
GATTCAATCAAAAGCAACCGAACTACTCTTCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034590	XLOC_034590	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00054893-protein	TCONS_00054893-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_246	supercontig	scaffold_246:79028..82316 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
289.168	305.204	200.456	180.606	0.407805	0.547027	0.259931	0.125907	0.381947	0.497279	0.311125	0.24693	0.164956	0.14298	0.0401047	0.0423171	0.0911031	0.0929262	0.965957	1.36667	1.35988	0.906005	168.251	139.82	0.106029	0.259393	8.24675	9.24312	113.068	135.525

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00054893 vs. Swiss-Prot (Human)

BLAST of TCONS_00054893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00054893 (transcript) - C. hemisphaerica