TCONS_00054897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054897
Unique NameTCONS_00054897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054897 ID=TCONS_00054897|Name=TCONS_00054897|organism=Clytia hemisphaerica|type=transcript|length=1243bp
ttttaatattacAAAGATTTACTATGAAGTAATAATGTTTCAAAGTATTg
caaactttttatcatttttgaagaatccggtctgtaaaatagatCTATCA
TAAATGTTCAATGCGACTTGCTCTTCTACCATAATTCTTTTTACGGCCGT
CATCTTTTACATGTGGTACGTTTTGATTATACACCTTCCTTTGAATCCCC
TATTTTTGGCAATTCAAAGCTATGATTACGATGGACTTTGAGgaaatttt
tacctttttttacaGCCATCAAACACTAGGAAGGCAAGATGACAAACCCT
CACGGAAAACGAAGAGGAACCCGTTATTTGTTCTCTAAGGGATACAAGAA
GAACGGTGTTGAACATCTCTCCACTTATTTGAAGGTTTACAAAGTTGGTG
ATATTGTTGATGTTAAGggAAATGGTGCCTTCCAAAAAGGTATGCCTTAC
AAATTTTACCATGGCAAAACTGGTCGCGTTTTCAACGTTACACGAAGAGC
TGTTGGTGTTGTTGTAAATAAACAATTAGGGAACCGTATCATTCCCAAGA
GAATCAATGTCCGTATTGAGCATGTTCGCCATTCAACATGCAGAGATGAT
TTCTTGAACCGTGTCAAGGCTAATGAAGTTAAAAAAGCCGAAGCAAATGC
CAAGGGAGAAAAAGTCGATTGCAGAAGATTGccTGTACAACCACGTGAAG
GACACTTTGTTACCACCAAACGAAATGAACCAACGCTGGTCGAACCAATT
CCATACGAATTCATCATCTAAATAAATTATCACCAACTGAATTAACTTTG
CTTCACTTATCNATgaaatatatgttttttttgctcatgagggcttactt
ttaaagaatatgtgtgttagccatgaaattttggttgctttgcgtgtttt
tatagaaaaactggccaaaNCCCCATTTTACGGGCCCAATTAGGAGTGAA
CCTATCTAAGCAGGTGGGGCTCATAATTCCTTTTCAGTAGGGGGAAATAT
CTTCGTTTTTTTAggtcgttcgattttattagtGAAAGcgcttgttatac
atttttggaaagctaaggggtaggggaatcgaagtAACTtgggttccaat
tttttttcggacacttcgGTGTgatttttcggacaaatatgacggtctca
ggcaaaaatcataggataaagcaacgatgtaaaaataatagataaccaac
ttgccttgattctcaaaaaacatccgtgttatggttgtaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00054897-protein

>TCONS_00054897-protein ID=TCONS_00054897-protein|Name=TCONS_00054897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MTNPHGKRRGTRYLFSKGYKKNGVEHLSTYLKVYKVGDIVDVKGNGAFQK
GMPYKFYHGKTGRVFNVTRRAVGVVVNKQLGNRIIPKRINVRIEHVRHST
CRDDFLNRVKANEVKKAEANAKGEKVDCRRLPVQPREGHFVTTKRNEPTL
VEPIPYEFII
Run BLAST on NCBI

transcript from alignment at scaffold_246:112580..122443+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054897 ID=TCONS_00054897|Name=TCONS_00054897|organism=Clytia hemisphaerica|type=transcript|length=9864bp|location=Sequence derived from alignment at scaffold_246:112580..122443+ (Clytia hemisphaerica)
ttttaatattacAAAGATTTACTATGAAGTAATAATGTTTCAAAGTATTg
caaactttttatcatttttgaagaatccggtctgtaaaatagatCTATCA
TAAATGTTCAATGCGACTTGCTCTTCTACCATAATTCTTTTTACGGCCGT
CATCTTTTACATGTGGTACGTTTTGATTATACACCTTCCTTTGAATCCCC
TATTTTTGGCAATTCAAAGCTATGATTACGATGGACTTTGAGgaaatttt
tacctttttttacaGCCATCAAACACTAGGAAGGCAAGATGACAAACCCT
CACGGAAAACGAAGAGGAACCCGTTATTTGTTCTCTAAGGGATACAAGAA
GAACGGTATGATATGATACATGTGTTATTCGACCAAACTATTACTAGAAA
CTACCCTCTATCAGACTTTCCTCTTCATATTAAATAAGCTGATTTCAAGA
TGAGAACATGGTTGTGATCTGCCTTTATGCCCTACAGGGCTGCTCGCTCA
TAATTCTTTTCGATATCTGTCACGTCTGTTAGGCTGCGGTCACAAATGAG
TTGTGACTAATGAGCGAATCAACAATTGGACCAGTCAAACCAATtcaacg
atcgaaccagtcgaacgcaatcgacagATTTAAATTCGATTGGCGTCTGG
TCCTACTGActctaaatttttgagaaaaagtgttcCCCTTTGAGTtagaa
aaatcaagaaattttacCTCCTTTTCACATGATAAACTACTATCTCTAGG
GTTCTTTATTAACTAACTGCTTTGATTCTTCTATTAACAACATCTAATTT
GCACAAAAAATGTCCTGGTGTAACCcatacttaaaaacaaatattaggCA
CCTAGCTAAAAGCAGAGAGTTACAGCTGCATTCCTTTAAAAAGTACACGC
CGCAAACGTCTTAATCTCTAAGTGTAGAAGTTATCTTAAGATCGCGTCGC
GTGCCCTTGTGGACCTGGGTTTTAGGCTATTGTGGTTAGATTTCAGGATT
GCACAATGACTTGaggaattttaaaaattgaggtttttggtggaaaaatg
aaaaaaaggttcTAATTTTCGACCaacccatttttcaaagcttctaggac
acgaaccaaacaatcaattgggcctggccctacataaggggtcactcaca
aatcgattttaagttcAAATAACGTCATATGACGTTTTGATAgctaaccc
acccacccaccccaCATAACGTCACTCAAAAAAATCTGGTactttgattc
tttttcttCGGCCAAAACCTCAAAACCAACACTAACTCGTGCTCAACGCC
ATCACAATATTTTCGACTCGAGTGTTGCAACCAACCAACCAAACCAACGC
GGCTTTTGACCACTGGTTTCTAGACCCGACTTGCCCAGACTGATAAAGCT
CGATGCTTGCCCAAAGTACTCGTTGCTTCCAGCTGGAGTGCGACGcgtgc
aaaaaatgaaaatgtttcggCGGACAAATAGTTTTTATTACatattgctt
ttcttttttatccTCCACGCACAGAATGAGGTTTGTCAGTCCTTAAAATT
GTTCTTCGCACCAGTTCCGTATTCTTTTCCGAGACTTCCGTGTTTTTTTC
CGCAGCTTTccctttatttgaaaattttcgaggTGCTCTTCGTCTAAGTC
CAACAgtcaacaaaatacaaaatgcaGCGATCAAAGTCGAGCCGTCGTTA
TACGAACTTAACTTTTGAGGGGTCTGGTTTCTCTGGTGATGGTTTGACTG
TTTGCTCTGTACTTTATATCATTTcacttatattttttattctttcatcc
ataaaaaatagaaaagagatCATATATTAGATGAAAGCTCTATCTCAAAA
TCATGTTTTTTATAACCCATTCAAAGCGTCATCCTACCTTGACCCACCCA
CCCATAAACGTCATATGACGTTATTTGAACTTAAGATCGATTTGAGAGTG
ACCCCTAAATGCAAAGAACAACAGgccatttatttttaaattccaTTTTA
TAATACAATTTTTATATTGACTGAATGTTTAGTTTTCCCTTTTTCTCATT
GCAGTAATTCTTTTGAAAGTCTATCAAGTTATAATTTCACATTTAGTACT
ATTTGCCCTTGCATTTCTTGtttcttgttaatatttttctggatttttca
GGTGTTGAACATCTCTCCACTTATTTGAAGGTTTACAAAGTTGGTGATAT
TGTTGATGTTAAGGTAAACAACTTAAACATGTTTGTTAGCTTTCAAATGA
ACCCCATTATTATTAGGCCTTTTGGGGGTTCCTACTCTCAAAGAGTTAGT
TTCCACCATCcttgtataacttttgatctaggaaAGCTATGGACTTGAAA
CTTGGGCAGAAAATTTTCTCTACCATGAAAGGAAATCATAGAAAATAATT
GGTTATGActtcatcacaaagtttcacaatcaCCCCTCACCAATGAAAGC
TGATTTAAGTTGAACAAATAAAGATTCTTTAACATATTTGACGGTTTTTA
TTATgctaaaattgacatttaaaATCCAAATCATTTTTGAATAATAACTC
TTGACTTTTTagtaaaatcttattaagagaaCTTGTGTAAATCTTTAAGG
GTCATAGGTCTTCTAGATGGttatcaggttttatgacttgaCTGTAAGAC
GTGACATAATACCCAGCTGTAatagcttaaaactcaaaattttaaaatgc
tgATAATTTCTGTACTATTTATccaatcatattcaaattttgacatgcaA
CGGGTATTGACAatgttaatttaaaaaaaaattgaaaatgattgatGACA
AATTtgactcatcttcagcatagattttacaaaaagtcttaaatggaaaa
taagaaactggcaattatgttaaagaaacacctattctgtttaaagattc
tgaaagagaactttcaagaatctttaaacagaatctaaatataTTTTTCG
GCTATCGAATGGTACCCCTCCTGAATTAACTAAAGTTTTACTTAAgacag
cctttttagtggaaaaaacAGTAGAAAAAGTCCCTTTTTGACCACTAACA
GACGCTTTGTGATGTCATTGCTTTTTGGATGACATCgccaattatttttt
taattcaaagttTGTGTCATGTTGGAGAAAATGTGTACCAATCTTTATac
ccatagctcttctagataaaacaaaaaataaaaaaaaataaagagtttGC
ACCCCTTCCCCATTCAAGTCAAGTAAGAAAGGGGCTCGGAAATGTTAGTC
AACTCATCTGAACTCATAgtccttattaaaaaaaccttGTCTGGAAGGCT
TTAGTTTCTTTCCTTTGCTTCTTACTTGACCTTGCGCTTGAGAAATTTGT
TTTACTCACAATTTTATTATTACTGTTtacatatcttccttcgtttcaag
cataaaactcctactctttgttttgaatattgaaattctccggataaCGG
GCATGCTCACTGggcttttaattaaaaaatagaGACTTTcaaaacctaag
ccaatcagctgtgttttgaACATTCTTTTATTCAAAATCTCAATTGATAA
CAGTTGATAAATATCTTTTGTCAATAGCAGTGCCTATAAACAAAGAGTAA
GGTCCAAAAGCCTAAGAGCCTGTCTATTCTGTAGACTAGGATCATCTGTG
CTAACAAACCtcactacatgttttttttataagcgtacAAAATCCAAAAG
CTGTCACGGAAATGCTTAGATCAAGagatttacaaagctgaaaaatgctt
tgagggatgcttatatcctaagtagaatatcattattattattattatta
ttattattataatgtaacaaagttctaggcgcacgagggcctctggaact
gatcgtgattatacgtattttacaattgtctNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGT
CGATAATTGACTGCCAAATTCTGAGGTCCCTTGTTTTTGTAAATAGGTGT
GACATGTGCCACCTTCCAATCTTGTGGTAATGAGCCTTCAACTAAGGATT
TGTTCATGATTACAGCCAAGGGTAGAGACAGATAGTCAGATAATTCCGCT
AGTATCCTAGGATGTATTTCGTCTGGACCGAATGACTTATTATGGTTGAG
CTCTTTCAATTGATTCTGTACCATCTCCTCAGAGATATGAATATCTCTGA
TGGATGAATTAGTTCTCTTTTCAAATGCAGGAAGCTCACCTACTGCTTCT
TTTGTGAATACACTGCAGAACTGTCGTTGAAGTATATTAGCTTTTTCGTG
ATCTTCATGCTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAAAGTCCCCGACAAAGCATTTATGAGAGTATTTGTTGTTTGATG
CGATATCTTTGATTAGATGATTCAACTTGTTGTTATTTTCAGCTGACGTG
TCATTTTTGATCATAATATCCTTAGAGAAATTTCGAATAACcagccaaaa
acaaacaaattctgaaaaGGAAGGCTCAAAGTAAtgtttagcatatgctt
aaatttttgccgtatatgagcctagatatgcttacaagCGCAATGCAAAA
ATCATGTATTTGTACTTTTTGATCACTTTGGTTGCACATAATATAGGGGT
GATGAAGTAAACCTagggggttcatacccctctgcaaactataaCCAGCT
TCAGCTCATTTAATGTTTTTCTATATACTAATTAACAGTAACTTGGtaat
aatccaattttttttccattttagggAAATGGTGCCTTCCAAAAAGGTAT
GCCTTACAAATTTTACCATGGCAAAACTGGTCGCGTTTTCAACGTTACAC
GAAGAGCTGTTGGTGTTGTTGTAAATAAACAATTAGGGTAAGGTAAATAA
TTCTCTTTCGCCTTGCACATCGACCTTATCAATTTGTCTTGAAAAATGTC
AGTTTTGATCATAATACAATGATGAAGCAAAATTATGAAGGACTTGTTAG
GCAGAAGCCTGCAAAGGCTGAACCCACTGTTATTTTCAAGATTCTTGTTA
TATCAACTGCAATTTTTGCTGTCTGAGTATTATCTAATAAgtatttttca
cttaaaaactatttttcactttttagctATTAACTGTGAGGGTCATTCAC
AATCCACACAGTACACACTCAGTGAAGGGGAGAATATATTATATATCTGA
CTATATGAAGAAATCGAGAATTTTCTGTCCAACCGGGAGATTGTTATAAG
GCATCAGAAGTTGAGTTAGTTCTTGGACAATTTTCTTTGACATATCATCA
TTGTTTAGGCTTCCAGCTATACCTTGTTGTAATTTTTGTAGGAACCGTAT
CATTCCCAAGAGAATCAATGTCCGTATTGAGCATGTTCGCCATTCAACAT
GCAGAGATGATTTCTTGAAGTAAGTTGATTCGAATCTTTCATTAAAAGCG
ATTCTTTTGTACAGGCACTCAGCTGTGATGATTATTCTTTATGAAGGACT
TGTTAGACAGAAGCCTGAAAAGGCTGAACCCACTGTTATTTTCAAGATTC
TTGTTATTTCAAACGCTTGCTTGAAAGCAGTCTGAGCTTTAAAAAGTGTC
AACAAGGTGTTTGTCTTTGAAAAACATTACTAGAAGTATGAAATTTCTGT
ATACAGATTATATCTTTCATTTTAGCCGTGTCAAGGCTAATGAAGTTAAA
AAAGCCGAAGCAAATGCCAAGGGAGAAAAAGTCGATTGCAGAAGATTGGT
AAGTGAAAATATCCATCAGTTTCTAATTCAATCTTCTTTAAGTGTATAGA
ATCTATTTTGCTTTCGATtgtgttcaaaaaagaatgacataattcaactt
ttttagtgATGATTTTAAAAAGCCTATATAATGTGATATTTTGTGGCTac
agttaaaaaaatttattcccacgtcccaaaatgacaaaaatttcttttgc
attTAAAACGAAATTTCTAGTGATCTTCAGTGGCTAGTAATTAGCCTTTA
AAGTGTGTGAAAGATTGTGGCTAATTTTTTGAGTGGCTAATTCTACCAAC
TAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCACCCAGAGACAAa
agtattgaataaaaaagtctaATCGtggaatttgaaagttttttgcttga
gatgatacttattgaatggttttgttttcattttctgagGATACAGCATC
AGAAATGTGAATTTAAGTGGCTAAATACTCCTTGCAATTGTGTTGTTTGA
CTTGAGGAAAAACGTTTCAACAGGCATTTTACGTACTGACTTTATTCACC
ATGTAAAAAAGCTGTAGTTATGAGATTTTAGGATATTGTGCTAAATATGT
GGCTAATTccatagaaatactttttgtaaCACTTCCTGTAtgattttgtg
ttaaaatgtgTGGCTATTTGCATACTTAGTAACTAgtagtttttcttcat
tttaagcctaatttaaAGATTTCCCCTGCCATGTTTTATTGCCACAATTA
ATCAcatattaattttaaagaaaggcATGCAAGGTATCAAAAGAAAGCCA
ATGGAATTTTCGAAAGTTTAGACAAGGTTATTTTTTTCACTCGCGACGTG
AAAAAATGTGGGTAGCCTTTTTACTAATCCGGAAATTTTAGTAAGTCTTT
TTAGCCACGTAGAATCACAGGGCAACTATTAATTGATACTTTTGAATTca
gaaagtgaaaatttgatctTCAAGCTATAGTCTCAAACAATTCAGGTCTT
TGGAATTCTTTTGTGAATGGGTGTGGCTATCATTTAAAATAAgggccttt
tttcaaaaaagtgtgaaTATTAGCCGCGTGATTTCACAAATTAGTAAGTA
AAATACTTAAAATATGTTCTATTTCTTACTAATTTTTCAAGAACACcaga
tttattattttcatcactAGTATTTATTTGctatattgtttttttaatta
ttgaaaaaatatcaatacagCGAGTTCGAGCcacaatttttcacatttat
cacttgaaattctttcacaTAAGTATATCTCAGAAAAGTTCAATCTGTGA
TCTTCAACTTTGAACCAGTTCCATATGTGGATATTCAATAAGTGCTTAAT
TGAGgctatttcaaaaaaagatagaaaaagggTAATATTAGCCTCAAAAC
tacacattttgataaaaaaaagattccagTGAATTCCTAGAGTCCTAATC
CACAATCCTGTATTTTCCCCTCTCTCGTGAAACATTTGCTAAGAAGTTAC
AAGACATTatccaaaatcaacaaaaattgcatttttccaatgtgtcattc
ttttttgaacagaatctttcaaacaatttctatttttgcaTTCTTAGACA
TACTCAGCATTTTGTATCAAAAAAGGTTTTCTAAATCCGGATAGGAAAAT
GTTATCTCGAGTAATTATTTGAAAAGGTCAtgtatctttttctttctttc
agccTGTACAACCACGTGAAGGACACTTTGTTACCACCAAACGAAATGAA
CCAACGCTGGTCGAACCAATTCCATACGAATTCATCATCTAAATAAATTA
TCACCAACTGAATTAACTTTGCTTCACTTATCNATgaaatatatgttttt
tttgctcatgagggcttacttttaaagaatatgtgtgttagccatgaaat
tttggttgctttgcgtgtttttatagaaaaactggccaaaNCCCCATTTT
ACGGGCCCAATTAGGAGTGAACCTATCTAAGCAGGTGGGGCTCATAATTC
CTTTTCAGTAGGGGGAAATATCTTCGTTTTTTTAggtcgttcgattttat
tagtGAAAGcgcttgttatacatttttggaaagctaaggggtaggggaat
cgaagtAACTtgggttccaattttttttcggacacttcgGTGTgattttt
cggacaaatatgacggtctcaggcaaaaatcataggataaagcaacgatg
taaaaataatagataaccaacttgccttgattctcaaaaaacatccgtgt
tatggttgtaaaaa

Coding sequence (CDS) from alignment at scaffold_246:112580..122443+

>TCONS_00054897 ID=TCONS_00054897|Name=TCONS_00054897|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_246:112580..122443+ (Clytia hemisphaerica)
ATGACAAACCCTCACGGAAAACGAAGAGGAACCCGTTATTTGTTCTCTAA
GGGATACAAGAAGAACGGTGTTGAACATCTCTCCACTTATTTGAAGGTTT
ACAAAGTTGGTGATATTGTTGATGTTAAGggAAATGGTGCCTTCCAAAAA
GGTATGCCTTACAAATTTTACCATGGCAAAACTGGTCGCGTTTTCAACGT
TACACGAAGAGCTGTTGGTGTTGTTGTAAATAAACAATTAGGGAACCGTA
TCATTCCCAAGAGAATCAATGTCCGTATTGAGCATGTTCGCCATTCAACA
TGCAGAGATGATTTCTTGAACCGTGTCAAGGCTAATGAAGTTAAAAAAGC
CGAAGCAAATGCCAAGGGAGAAAAAGTCGATTGCAGAAGATTGccTGTAC
AACCACGTGAAGGACACTTTGTTACCACCAAACGAAATGAACCAACGCTG
GTCGAACCAATTCCATACGAATTCATCATCTAAATGACAAACCCTCACGG
AAAACGAAGAGGAACCCGTTATTTGTTCTCTAAGGGATACAAGAAGAACG
GTGTTGAACATCTCTCCACTTATTTGAAGGTTTACAAAGTTGGTGATATT
GTTGATGTTAAGggAAATGGTGCCTTCCAAAAAGGTATGCCTTACAAATT
TTACCATGGCAAAACTGGTCGCGTTTTCAACGTTACACGAAGAGCTGTTG
GTGTTGTTGTAAATAAACAATTAGGGAACCGTATCATTCCCAAGAGAATC
AATGTCCGTATTGAGCATGTTCGCCATTCAACATGCAGAGATGATTTCTT
GAACCGTGTCAAGGCTAATGAAGTTAAAAAAGCCGAAGCAAATGCCAAGG
GAGAAAAAGTCGATTGCAGAAGATTGccTGTACAACCACGTGAAGGACAC
TTTGTTACCACCAAACGAAATGAACCAACGCTGGTCGAACCAATTCCATA
CGAATTCATCATCTAAATGACAAACCCTCACGGAAAACGAAGAGGAACCC
GTTATTTGTTCTCTAAGGGATACAAGAAGAACGGTGTTGAACATCTCTCC
ACTTATTTGAAGGTTTACAAAGTTGGTGATATTGTTGATGTTAAGggAAA
TGGTGCCTTCCAAAAAGGTATGCCTTACAAATTTTACCATGGCAAAACTG
GTCGCGTTTTCAACGTTACACGAAGAGCTGTTGGTGTTGTTGTAAATAAA
CAATTAGGGAACCGTATCATTCCCAAGAGAATCAATGTCCGTATTGAGCA
TGTTCGCCATTCAACATGCAGAGATGATTTCTTGAACCGTGTCAAGGCTA
ATGAAGTTAAAAAAGCCGAAGCAAATGCCAAGGGAGAAAAAGTCGATTGC
AGAAGATTGccTGTACAACCACGTGAAGGACACTTTGTTACCACCAAACG
AAATGAACCAACGCTGGTCGAACCAATTCCATACGAATTCATCATCTAAA
TGACAAACCCTCACGGAAAACGAAGAGGAACCCGTTATTTGTTCTCTAAG
GGATACAAGAAGAACGGTGTTGAACATCTCTCCACTTATTTGAAGGTTTA
CAAAGTTGGTGATATTGTTGATGTTAAGggAAATGGTGCCTTCCAAAAAG
GTATGCCTTACAAATTTTACCATGGCAAAACTGGTCGCGTTTTCAACGTT
ACACGAAGAGCTGTTGGTGTTGTTGTAAATAAACAATTAGGGAACCGTAT
CATTCCCAAGAGAATCAATGTCCGTATTGAGCATGTTCGCCATTCAACAT
GCAGAGATGATTTCTTGAACCGTGTCAAGGCTAATGAAGTTAAAAAAGCC
GAAGCAAATGCCAAGGGAGAAAAAGTCGATTGCAGAAGATTGccTGTACA
ACCACGTGAAGGACACTTTGTTACCACCAAACGAAATGAACCAACGCTGG
TCGAACCAATTCCATACGAATTCATCATCTAAATGACAAACCCTCACGGA
AAACGAAGAGGAACCCGTTATTTGTTCTCTAAGGGATACAAGAAGAACGG
TGTTGAACATCTCTCCACTTATTTGAAGGTTTACAAAGTTGGTGATATTG
TTGATGTTAAGggAAATGGTGCCTTCCAAAAAGGTATGCCTTACAAATTT
TACCATGGCAAAACTGGTCGCGTTTTCAACGTTACACGAAGAGCTGTTGG
TGTTGTTGTAAATAAACAATTAGGGAACCGTATCATTCCCAAGAGAATCA
ATGTCCGTATTGAGCATGTTCGCCATTCAACATGCAGAGATGATTTCTTG
AACCGTGTCAAGGCTAATGAAGTTAAAAAAGCCGAAGCAAATGCCAAGGG
AGAAAAAGTCGATTGCAGAAGATTGccTGTACAACCACGTGAAGGACACT
TTGTTACCACCAAACGAAATGAACCAACGCTGGTCGAACCAATTCCATAC
GAATTCATCATCTAAATGACAAACCCTCACGGAAAACGAAGAGGAACCCG
TTATTTGTTCTCTAAGGGATACAAGAAGAACGGTGTTGAACATCTCTCCA
CTTATTTGAAGGTTTACAAAGTTGGTGATATTGTTGATGTTAAGggAAAT
GGTGCCTTCCAAAAAGGTATGCCTTACAAATTTTACCATGGCAAAACTGG
TCGCGTTTTCAACGTTACACGAAGAGCTGTTGGTGTTGTTGTAAATAAAC
AATTAGGGAACCGTATCATTCCCAAGAGAATCAATGTCCGTATTGAGCAT
GTTCGCCATTCAACATGCAGAGATGATTTCTTGAACCGTGTCAAGGCTAA
TGAAGTTAAAAAAGCCGAAGCAAATGCCAAGGGAGAAAAAGTCGATTGCA
GAAGATTGccTGTACAACCACGTGAAGGACACTTTGTTACCACCAAACGA
AATGAACCAACGCTGGTCGAACCAATTCCATACGAATTCATCATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034593XLOC_034593Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054897-proteinTCONS_00054897-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054897-exon-scaffold_246-1491911889:112580..112934TCONS_00054897-exon-scaffold_246-1491911889:112580..112934Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1510915933:112580..112934TCONS_00054897-exon-scaffold_246-1510915933:112580..112934Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1575043694:112580..112934TCONS_00054897-exon-scaffold_246-1575043694:112580..112934Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1491911889:114731..114792TCONS_00054897-exon-scaffold_246-1491911889:114731..114792Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1510915933:114731..114792TCONS_00054897-exon-scaffold_246-1510915933:114731..114792Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1575043694:114731..114792TCONS_00054897-exon-scaffold_246-1575043694:114731..114792Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1491911889:118954..119066TCONS_00054897-exon-scaffold_246-1491911889:118954..119066Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1510915933:118954..119066TCONS_00054897-exon-scaffold_246-1510915933:118954..119066Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1575043694:118954..119066TCONS_00054897-exon-scaffold_246-1575043694:118954..119066Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1491911889:119521..119598TCONS_00054897-exon-scaffold_246-1491911889:119521..119598Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1510915933:119521..119598TCONS_00054897-exon-scaffold_246-1510915933:119521..119598Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1575043694:119521..119598TCONS_00054897-exon-scaffold_246-1575043694:119521..119598Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1491911889:119855..119927TCONS_00054897-exon-scaffold_246-1491911889:119855..119927Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1510915933:119855..119927TCONS_00054897-exon-scaffold_246-1510915933:119855..119927Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1575043694:119855..119927TCONS_00054897-exon-scaffold_246-1575043694:119855..119927Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1491911889:121882..122443TCONS_00054897-exon-scaffold_246-1491911889:121882..122443Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1510915933:121882..122443TCONS_00054897-exon-scaffold_246-1510915933:121882..122443Clytia hemisphaericaexon
TCONS_00054897-exon-scaffold_246-1575043694:121882..122443TCONS_00054897-exon-scaffold_246-1575043694:121882..122443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:112580..122443 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
369.597	372.264	431.755	494.49	348.181	290.99	416.201	436.081	351.706	305.081	354.717	444.932	448.832	479.727	428.841	400.351	464.926	460.363	237.673	264.671	584.434	558.508	494.623	458.379	631.792	660.695	604.623	593.549	395.498	403.476
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001147Ribosomal_L21e
IPR018259Ribosomal_L21e_CS
IPR008991Translation_prot_SH3-like
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00054897 vs. Swiss-Prot (Human)
Match: RL21 (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.090e-57
Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 1 
Query:  289 MTNPHGKRRGTRYLFSKGYKKNGVEHLSTYLKVYKVGDIVDVKGNGAFQKGMPYKFYHGKTGRVFNVTRRAVGVVVNKQLGNRIIPKRINVRIEHVRHSTCRDDFLNRXXXXXXXXXXXXXXXXXXDCRRLPVQPREGHFVTTKRNEPTLVEPIPYEFI 765
            MTN  GKRRGTRY+FS+ ++K+GV  L+TY+++YK GDIVD+KG G  QKGMP+K YHGKTGRV+NVT+ AVG+VVNKQ+  +I+ KRINVRIEH++HS  RD FL RVK N+ KK EA  KG  V  +R P  PRE HFV T   EP L+EPIPYEF+
Sbjct:    1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159
The following BLAST results are available for this feature:
BLAST of TCONS_00054897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL214.090e-5762.8960S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
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