|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054899 ID=TCONS_00054899|Name=TCONS_00054899|organism=Clytia hemisphaerica|type=transcript|length=1001bp
tgtcCTCTTTTTGTTTGTGTCTTGTGTTACTTTTAGAAAGCTCTTATAAC
ATGTATAACAAAAAAGGAATTGAAAGAAGACACCTTTCTTAAGCTAGAAT
AGAATACAATAATAAATTCATGGATCACATAGAAACAGCAAACATATCAT
ATAAACACACTATTCTAAGTTAGATCAAGAAGGacgatttcaaattttaa
agatgGCTTTTGGTGTGATATGAAATCACAAAACATCAGAAAGGAATTAT
TAGAAACAACTAGCTAAAGAAGTATGATAATATGAGCAACGTGAGAAACA
CCGAAAGCAGTGGGGATAGTAAACTTGATAATGGCTACCCTTTTAGAGAT
GATATCATAAACTTTTACTTGAAGTACAAAGGGAAAAAATATTACTTTGA
ATTCCCTGTTTTAATTGACAGATCCTTTTTATTGAGAGAAATCAAGACAA
GAACTGGGGTTCGCGGATCTTTTTCACTCCGATGGCAAGAATGGGGCGAA
AAAAGTcagcaagaaaaagaaaagtctacaaaactgaaagaaaaaccaaa
aagatTAGCAGACGTTCATAAAGAGGCAAAAGGCGAAGAAATTTGCATTC
ATTCCACTTACATCACTACACTTGCTTTGGTTAAATTCTGTGGTTATACG
TTAACAATTATCGATGGAAACGATaGTGGTGGTGATTTGTCAAGAAGCGT
TCAGTCACAAATGACGATGACCGAATACAATAGAAAGTTGATCGAAGAGA
GGCGAAAGCCTTTTGATTGCCCAccataatatatttttttgtaaatatct
tAAGCAACTTTTTTAAACAAGCGAAAAGCAAGGAGGTAAAGAACGGTTTT
CTTTGAATTTCAGCCTTATTTGTTGCATCGAAGAACATTGACCATcgcaa
agaagaaaaaattaatcgtataaattttagcgagactaattttagcgtat
attagcgagtcaggaaaatcttgatttttttggatttattttattttagc
g Run BLAST on NCBI protein sequence of TCONS_00054899-protein >TCONS_00054899-protein ID=TCONS_00054899-protein|Name=TCONS_00054899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MSNVRNTESSGDSKLDNGYPFRDDIINFYLKYKGKKYYFEFPVLIDRSFL
LREIKTRTGVRGSFSLRWQEWGEKSQQEKEKSTKLKEKPKRLADVHKEAK
GEEICIHSTYITTLALVKFCGYTLTIIDGNDSGGDLSRSVQSQMTMTEYN
RKLIEERRKPFDCPP Run BLAST on NCBI transcript from alignment at scaffold_246:160867..162118+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054899 ID=TCONS_00054899|Name=TCONS_00054899|organism=Clytia hemisphaerica|type=transcript|length=1252bp|location=Sequence derived from alignment at scaffold_246:160867..162118+ (Clytia hemisphaerica)
tgtcCTCTTTTTGTTTGTGTCTTGTGTTACTTTTAGAAAGCTCTTATAAC
ATGTATAACAAAAAAGGAATTGAAAGAAGACACCTTTCTTAAGCTAGAAT
AGAATACAATAATAAATTCATGGATCACATAGAAACAGCAAACATATCAT
ATAAACACACTATTCTAAGTTAGATCAAGAAGGacgatttcaaattttaa
agatgGCTTTTGGTGTGATATGAAATCACAAAACATCAGAAAGGAATTAT
TAGAAACAACTAGCTAAAGAAGTATGATAATATGAGCAACGTGAGAAACA
CCGAAAGCAGTGGGGATAGTAAACTTGATAATGGCTACCCTTTTAGAGAT
GATATCATAAACTTTTACTTGAAGTACAAAGGGAAAAAATATTACTTTGA
ATTCCCTGTTTTAATTGACAGATCCTTTTTATTGAGAGAAATCAAGACAA
GAACTGGGGTTCGCGGATCTTTTTCACTCCGATGGCAAGAATGGGGCGAA
AAAAGTcagcaagaaaaagaaaagtctacaaaactgaaagaaaaaccaaa
aagatTAGCAGACGTTCATAAAGAGGCAAAAGGCGAAGAAATTTGCATTC
ATTCCACTTACATCACTACACTTGCTTTGGTTAAATTCTGTGGTTATACG
TTAACAATTATCGATGGAAACGATagtaagaaaagtttgaaattgcCCAC
TCAAGCTATAATTTCAACTCAGTTATATTCCAGTTcttaaagtgaatttt
tctattCACTAACAAACTCGTGTGTTTTAGGCATTGAGTTTTGGTTTCTT
TAAGTCAGTTTGTATCTTTGCACAGATCCAGCAGGTGTACATAAGCATTG
GACAATTGGCCAATTATTTGATGCAGGGTTGTAAGATTTATTACGATCGA
TTTCAATTTCCTTCTTTTATCTTAAGGTGGTGGTGATTTGTCAAGAAGCG
TTCAGTCACAAATGACGATGACCGAATACAATAGAAAGTTGATCGAAGAG
AGGCGAAAGCCTTTTGATTGCCCAccataatatatttttttgtaaatatc
ttAAGCAACTTTTTTAAACAAGCGAAAAGCAAGGAGGTAAAGAACGGTTT
TCTTTGAATTTCAGCCTTATTTGTTGCATCGAAGAACATTGACCATcgca
aagaagaaaaaattaatcgtataaattttagcgagactaattttagcgta
tattagcgagtcaggaaaatcttgatttttttggatttattttattttag
cg Coding sequence (CDS) from alignment at scaffold_246:160867..162118+ >TCONS_00054899 ID=TCONS_00054899|Name=TCONS_00054899|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_246:160867..162118+ (Clytia hemisphaerica)
ATGAGCAACGTGAGAAACACCGAAAGCAGTGGGGATAGTAAACTTGATAA
TGGCTACCCTTTTAGAGATGATATCATAAACTTTTACTTGAAGTACAAAG
GGAAAAAATATTACTTTGAATTCCCTGTTTTAATTGACAGATCCTTTTTA
TTGAGAGAAATCAAGACAAGAACTGGGGTTCGCGGATCTTTTTCACTCCG
ATGGCAAGAATGGGGCGAAAAAAGTcagcaagaaaaagaaaagtctacaa
aactgaaagaaaaaccaaaaagatTAGCAGACGTTCATAAAGAGGCAAAA
GGCGAAGAAATTTGCATTCATTCCACTTACATCACTACACTTGCTTTGGT
TAAATTCTGTGGTTATACGTTAACAATTATCGATGGAAACGATaGTGGTG
GTGATTTGTCAAGAAGCGTTCAGTCACAAATGACGATGACCGAATACAAT
AGAAAGTTGATCGAAGAGAGGCGAAAGCCTTTTGATTGCCCAccataaAT
GAGCAACGTGAGAAACACCGAAAGCAGTGGGGATAGTAAACTTGATAATG
GCTACCCTTTTAGAGATGATATCATAAACTTTTACTTGAAGTACAAAGGG
AAAAAATATTACTTTGAATTCCCTGTTTTAATTGACAGATCCTTTTTATT
GAGAGAAATCAAGACAAGAACTGGGGTTCGCGGATCTTTTTCACTCCGAT
GGCAAGAATGGGGCGAAAAAAGTcagcaagaaaaagaaaagtctacaaaa
ctgaaagaaaaaccaaaaagatTAGCAGACGTTCATAAAGAGGCAAAAGG
CGAAGAAATTTGCATTCATTCCACTTACATCACTACACTTGCTTTGGTTA
AATTCTGTGGTTATACGTTAACAATTATCGATGGAAACGATaGTGGTGGT
GATTTGTCAAGAAGCGTTCAGTCACAAATGACGATGACCGAATACAATAG
AAAGTTGATCGAAGAGAGGCGAAAGCCTTTTGATTGCCCAccataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054899-exon-scaffold_246-1491911889:160867..161541 | TCONS_00054899-exon-scaffold_246-1491911889:160867..161541 | Clytia hemisphaerica | exon |
| TCONS_00054899-exon-scaffold_246-1510915933:160867..161541 | TCONS_00054899-exon-scaffold_246-1510915933:160867..161541 | Clytia hemisphaerica | exon |
| TCONS_00054899-exon-scaffold_246-1575043694:160867..161541 | TCONS_00054899-exon-scaffold_246-1575043694:160867..161541 | Clytia hemisphaerica | exon |
| TCONS_00054899-exon-scaffold_246-1491911889:161793..162118 | TCONS_00054899-exon-scaffold_246-1491911889:161793..162118 | Clytia hemisphaerica | exon |
| TCONS_00054899-exon-scaffold_246-1510915933:161793..162118 | TCONS_00054899-exon-scaffold_246-1510915933:161793..162118 | Clytia hemisphaerica | exon |
| TCONS_00054899-exon-scaffold_246-1575043694:161793..162118 | TCONS_00054899-exon-scaffold_246-1575043694:161793..162118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_246 | supercontig | scaffold_246:160867..162118 + |
Blast
The following BLAST results are available for this feature:
|
