Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055036 ID=TCONS_00055036|Name=TCONS_00055036|organism=Clytia hemisphaerica|type=transcript|length=3454bpRun BLAST on NCBI protein sequence of TCONS_00055036-protein >TCONS_00055036-protein ID=TCONS_00055036-protein|Name=TCONS_00055036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=933bp MEIFYLVACLIFYFTRSVNGSFLDFAPPYLANDALNGEREYANISGDIKLRun BLAST on NCBI transcript from alignment at scaffold_248:177007..198470- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055036 ID=TCONS_00055036|Name=TCONS_00055036|organism=Clytia hemisphaerica|type=transcript|length=21464bp|location=Sequence derived from alignment at scaffold_248:177007..198470- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_248:177007..198470- >TCONS_00055036 ID=TCONS_00055036|Name=TCONS_00055036|organism=Clytia hemisphaerica|type=CDS|length=19614bp|location=Sequence derived from alignment at scaffold_248:177007..198470- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055036 vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2) HSP 1 Score: 363.614 bits (932), Expect = 1.918e-108 Identity = 282/881 (32.01%), Postives = 438/881 (49.72%), Query Frame = 2 Query: 407 NGEREYANISGDIKLGALVAIYDAG------GQVNRQCKTEGISPFGIQRVEAMKFAVNEINAKG-IIPNVTLGIEIRDSCGTETHALDEALHFVTDRVPTCIE------------DQRVPIF--GVVGASMSLLTAAVANLLRLFQIPLVSYAATSTELSNKEKYDFLLRTVPPDNLQSAAMVDFIIDVLGWKSVFIIYSAGSYGEYGFESFMEAVDQRANDTKDSLCIVDKEKVKPGISEKEMLAILDEFNKGFKSVVGIVCYCEIPDVTTLVKVIDKHYPRFRLIGSD------TTLSGAKTNKSIIFSLAYDSNSVSDFYKIYRGLTPKKVNVSSNPWFHQFWNESCAKLKAMNPGYNDTDCSSEDVFGFCR--DTPIETNDVTCPQDDKXXXXXXXXXXXXXXXRNLLESKPDKNVTRLLSMN--LKNRVFFDEYLKKVEF------DGRSGSI----SFGEDVERGAYDIIQF--IGEKRSVL--GMWKEG-SIYVNQSIQETLRREFDESTCQPKCKNNEEQVEKYKTRCCWTCEACADDEYLRNN-TCFACDHGQQPNKDGDGCVDTPIEYIKPYWQGIIGV----LSTIGIICTLFTFKVFIKNNDTPLVKASGREXXXXXXXXXXXXFCNPLFMIPEPSDITCGISRFNFGIFLCLCYGSLLVKTNRIARIF----TGKQDLLFLTPNWQLILTAFIMMPQVLITSIGLVKDRTLSYINYDIDPRVGYHMCSKASDTGDIYGTIVYNILLVIMCTYYAFLTRKVPANFNESRYIGFVMYTTIVIWCAFLPVYFWISLEQRL--VFLMLDHILNALTLLIGLFGMKMYILLLKPDKNTMA-----NSKTRSVTYVSELDTNGTVYIDGLSNG 2863 N R I GD+ LG L I + G G++N GIQR+EAM FA++EIN ++P V LG+ I D+C +T+AL+++L FV + E + +P+ GV+G S S ++ VANLLRLFQIP +SYA+TS +LS+K +YD+ RTVPPD Q+ AM + I+ W V + S G YGE G E+F + R ++CI EKV K +++ E + + V +V + D L+ + F + SD + + G++ +L S V F + ++ L P N NPWF FW + CS ++ R D + + Q+ KI + ++A+YA A+A+ + + N T+L L + + +YL K+ F + + SI +FG+ + G Y++ F +G K S L G W E S+ VN SI + R S C C NE + + CCW C C EYL + TC C GQ P D GC D P +YI+ W+ + ++ +G +CT VFIK+N+TPLVKASGREL Y+LL G+ + +C F I +PS + C + R G +CY +LL KTN IARIF G Q F++P+ Q+ + +++ Q+++ S+ L+ + + + R + D+ + ++ Y+++LVI+CT YAF TRK P NFNE+++IGF MYTT +IW AFLP+++ S + R+ + + L+ +L LF K++I+L +P KN + N + S T + ++ + Y+ + NG Sbjct: 27 NFLRREIKIEGDLVLGGLFPINEKGTGTEECGRINED--------RGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAE-ILRFFNWTYVSTVASEGDYGETGIEAFEQEARLR------NICIATAEKVGRSNIRKSYDSVIRELLQKPNARV-VVLFMRSDDSRELIAAASRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNP--YNNHRNPWFRDFWEQK-------------FQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM-QRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM--GRYNVFNFQNVGGKYSYLKVGHWAETLSLDVN-SIHWS-RNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLADEFTCMDCGSGQWPTADLTGCYDLPEDYIR--WEDAWAIGPVTIACLGFMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEAPGTRRYTLAEKRETVILKCNVKDSSMLI-SLTYDVILVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKVHIILFQPQKNVVTHRLHLNRFSVSGTGTTYSQSSASTYVPTVCNG 868 The following BLAST results are available for this feature:
BLAST of TCONS_00055036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00055036 (transcript) - C. hemisphaerica
Overview
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