TCONS_00055165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055165
Unique NameTCONS_00055165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=transcript|length=406bp
TAGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT
GAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTG
GACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGA
ACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAG
TCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGA
TGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGA
AGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCT
GATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATA
TTGGAT
Run BLAST on NCBI

protein sequence of TCONS_00055165-protein

>TCONS_00055165-protein ID=TCONS_00055165-protein|Name=TCONS_00055165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AKSPLNQTGVWENCDDEKRYICQVSNNIGNGSWTSWASTTNCSEPCGGGN
YTQQRTYKMNEQCEEESGFEERYPDCNTQSCQDVTHFMSTNEEMFNNASK
DCETKGGRLAIFPEKSDWESFINESRIEDDSQYW
Run BLAST on NCBI

transcript from alignment at scaffold_251:434430..438854+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=transcript|length=4425bp|location=Sequence derived from alignment at scaffold_251:434430..438854+ (Clytia hemisphaerica)
TAGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT GAAAAACGTTATATTTGCCAAGTTTCAAACAGTAAGGTCTTCTTCGCTAC GGTCGTGATTAGATCTCGTTTAAAATGATGAATCTTCAAAGCAGATTTAG TATCTGCGGCCTTCTATAAACATTTCGTATGTGTAATAGtcatcggacag ttgcgagtacaataggagaaatattttacgagttccgatatttttccgta caatatatataatattaaaatatacggaaaatccggaacgagtgaaatat ttcttatattgtacgagcaaatgtctgataactagTTTATcggtagcgag cacctcactaaaaaccgggatttttcatctcgtttcttagtgagttccac tttgacgattttcgaaaaatagaagcctttcaagtgtttNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNacattcgaaaaagtcgcaaagtggaatagacgttaat tgcgtaaaaaaacgcggggTGACGGCTAGTATAGGCtagtttatcggtga cccaaaaaactttttgtgttggaaaaaagcgcaggacacttttgtagcaa agtgacatTAGATTGcctctaccgctacaatgcaacaacatcttttcgtc aatttatattttgtacatgtaaaatacaagatatattgtactctttttaa ccaatcaaattgctgatattttttggatcgccgataaaatgTCAtaatgt acactttttttttataagaatacactttataagaatgttcatgatgaaaa tggccaaaaaattaagaatatgctaagaatatcaccatcatggaattttg ctactcaagctatataaagaatgccatttttagagcattttcaattataa attatcaattacccccaagtaaggctcactcctttcaaaAAATGccatct tatgcttgagacgtgtGTAccaaatgttaaatctagtctgagtTAGAACC CTAGCCTAAGAATATGCTGTAGGATGAgtttaagatgattttcccaaaaa agttaagaatatctatgatgaaatgggtttacaccattcttataaaaaaa agcgtgtaaaggCTGTCTCTacaaatcataaaataaaaataaaaattgaa cgTATAtacccaactggcacacaacgttgtttcaacgtttatctaacgtt tgCCACGTCTATATAAttttagatgaacgttgaaacaacgttgtgtgtca gctgggtaacAATTTCAAGAAAACTGCTTAGTTACTTTCCAATAGTTAGA TTTGTTACCATTCAAAATAATTGCCAATTACGTTGAGTGCTATTTATTTC GTGTTGATATAGACATTGGTAATGGTAGTTGGACATCATGGGCCTCCACA ACAAATTGCTCAGAGCCCTGTGGAGGAGGGAACTACACACAACAGAGGAC ATACAAAATGAATGAGCAATGCGAAGAAGAGTCTGGTTTCGAAGAAAGAT ATCCTGATTGCAATACACAGTCGTGCCAAGGtcagttttattttcaacag ttttttaACTcgctctctcttattcgatcttAAAGGGACCAAcaaatttc ttcgaattagagaaggaTTGGAATTACAGAGAGAATGAAATACTACcttc cagctgaggggaccaatgttttagtttgaattattcatgatatgtcttcc aagattttttaaaaagttcaacccaatacgtcactttttctattgtttaa gtgacgtattgggttgaactttatgaaaattctcagaagactctccagtg ttgcatatcatgaatagaggtTTGGAATAGATAGAGTTGACTGTACTCCT AAAGTGATATGAAAGCTGTCATTTCAGGGAACTTGCTGATGGTCACTTGT CTCCAGACCGAGTTGATGTTTTCTGTTAATCTGGGGggactagggttgcg agctgacggggggtaccgcctgactttcgaccctcggatcCTTACcgaga ctaaaaaggagaaaacaaagaacaattttgtgaattttacgacccttacc ggaccaaatttgaccaattttgaccaaattgcgctctttctgggggtaaa aagttgaaattttcctatttctcctacccttagtgggactgaaatttgat tttctgatttttccgacccttagcgggacttttgNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttg gtaggatttgaagccaacaaatcctaccaaagttgcgcggccttgagcga cccgcctggtttttacacaaatgacagattgaaactaagatttaccgctt aattttgaaaaatatatcactcgaaaataaaggaattgctagattcaatc cgtcatcaaaaatacggcgcatgttttaaggcttcaatttttcttacctg agaaaggttagagattgacctctagcccttcgggcttgaaactcaatggg cggcacataccgtaccctccatttacccaagtacccccccccccgggNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNcccccccccccggggttaaTCTCGAGTGAAATGAGATTTAAAATAA AGTCTGTTAAAGTCTTATTTTAAAGGTCACTCTATGATACTTTCACATTA TGTAATTCATGATAttgatgacgtaatgttttctacggaattACACCGGT TTTTGCGCCAGTAGTGACAAATTTTAAACAACTTTTGtatagtttaaatt tgccactactggctaaaaccggggtatttccgtagaaaacattacgtcat gaatatcatgattAGACTTACTCtttatgattttctttttgggTTTTATT AGCTTCTTTTACTTTCCCAATTTTAGATGTCACTCACTTTATGTCTACCA ATGAAGAAATGTTTAACAATGCTTCGAAGGATTGCGAAACAAAAGGAGGC AGACTGGCAATATTCCCTGAAAAGTCTGATTGGGAAAGTTTTATCAAGTA CGTTTGTTCAGACTACGTGTTGTTCCTGTTTTTtagcactttgagcctca aattgttctcatCCCCGTTCGtaggaaaattattattttcattcTACTCT TACTGATTTGAACTTGAAATTTAGCAATTTCAGTCttaggattgttctta aattgtccTCATTTTTGTCATTTCAAGCCccactgttcttataaaattgt gcTAATAAAAAAAGGTTGTATTATGTTACCTTTAAAACGCATGAAATGAT TGGTTGCATCATAAGGTATTTTGTTTGCCCCAAGTTAAAAGGGTTAAGGT TTTTAGGTGAAAATGACTTTGTCTGTTACGCTATCAGTTTATACCTAGAT CAAATTTCTCGTCATCTGTTATATTGgttgttaagttacgtaatctcgct gacctttatatatccctggaccaagctataccCGCCATCTTTGaacgaag tttttttgaaagttgatacccgaaaagaagccattgtagtgtttaaAACT TTGCCTAgcgacaaacggcgctacatcattagtgtagaagcgaaactaga tctagcgctctctccgcgggtaccaatttcaaaaaaaactccgatcaaag attttgcttggccggcattgagtaacttgatccagggatatataaaggtc agagCGTAATCTCCACCAtaatggaagcaaacgttcgatttgcgcctctt cagattcgaacgtttgcttctaTAATGGCGGGAATCTTTCTCTATGGGCA TCGTGTAACTTGAccaaaaattattattattggtTAATTATTATCCACCT CTTTATCCTTTTGTTATTCTTATGTTATTCTTATTCCAGTGAATCAAGAA TTGAAGACGATTCTCAATATTGGAT

Coding sequence (CDS) from alignment at scaffold_251:434430..438854+

>TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_251:434430..438854+ (Clytia hemisphaerica)
GCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGATGA
AAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTGGA
CATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGAAC
TACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAGTC
TGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGATG
TCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGAAG
GATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCTGA
TTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATATT
GGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT
GAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTG
GACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGA
ACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAG
TCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGA
TGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGA
AGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCT
GATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATA
TTGGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATG
ATGAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGT
TGGACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGG
GAACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAG
AGTCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAA
GATGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTC
GAAGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGT
CTGATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAA
TATTGGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGA
TGATGAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTA
GTTGGACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGA
GGGAACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGA
AGAGTCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCC
AAGATGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCT
TCGAAGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAA
GTCTGATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTC
AATATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034750XLOC_034750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055165-exon-scaffold_251-1491911889:434430..434510TCONS_00055165-exon-scaffold_251-1491911889:434430..434510Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:434430..434510TCONS_00055165-exon-scaffold_251-1510915933:434430..434510Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:434430..434510TCONS_00055165-exon-scaffold_251-1575043694:434430..434510Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1491911889:436092..436259TCONS_00055165-exon-scaffold_251-1491911889:436092..436259Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:436092..436259TCONS_00055165-exon-scaffold_251-1510915933:436092..436259Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:436092..436259TCONS_00055165-exon-scaffold_251-1575043694:436092..436259Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1491911889:437856..437976TCONS_00055165-exon-scaffold_251-1491911889:437856..437976Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:437856..437976TCONS_00055165-exon-scaffold_251-1510915933:437856..437976Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:437856..437976TCONS_00055165-exon-scaffold_251-1575043694:437856..437976Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1491911889:438819..438854TCONS_00055165-exon-scaffold_251-1491911889:438819..438854Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1510915933:438819..438854TCONS_00055165-exon-scaffold_251-1510915933:438819..438854Clytia hemisphaericaexon
TCONS_00055165-exon-scaffold_251-1575043694:438819..438854TCONS_00055165-exon-scaffold_251-1575043694:438819..438854Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055165-proteinTCONS_00055165-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:434430..438854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (9.83068 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.253326 0 0.485723 0.383825 1.15767 0.650279 0.910551 0 0.547366 0.959512 5.06895 7.26505 3.06783 3.91304 0.730704 1.07175 2.1577 9.83068 0.395964 0.465423 0.261428 0.375455 3.67374 1.20795 1.72857 0.26354 0.399772 0.372009
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400Sequence
Match NameE-valueIdentityDescription
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