Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=transcript|length=406bp TAGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT GAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTG GACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGA ACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAG TCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGA TGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGA AGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCT GATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATA TTGGAT Run BLAST on NCBI protein sequence of TCONS_00055165-protein >TCONS_00055165-protein ID=TCONS_00055165-protein|Name=TCONS_00055165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AKSPLNQTGVWENCDDEKRYICQVSNNIGNGSWTSWASTTNCSEPCGGGN YTQQRTYKMNEQCEEESGFEERYPDCNTQSCQDVTHFMSTNEEMFNNASK DCETKGGRLAIFPEKSDWESFINESRIEDDSQYW Run BLAST on NCBI transcript from alignment at scaffold_251:434430..438854+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=transcript|length=4425bp|location=Sequence derived from alignment at scaffold_251:434430..438854+ (Clytia hemisphaerica) TAGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT
GAAAAACGTTATATTTGCCAAGTTTCAAACAGTAAGGTCTTCTTCGCTAC
GGTCGTGATTAGATCTCGTTTAAAATGATGAATCTTCAAAGCAGATTTAG
TATCTGCGGCCTTCTATAAACATTTCGTATGTGTAATAGtcatcggacag
ttgcgagtacaataggagaaatattttacgagttccgatatttttccgta
caatatatataatattaaaatatacggaaaatccggaacgagtgaaatat
ttcttatattgtacgagcaaatgtctgataactagTTTATcggtagcgag
cacctcactaaaaaccgggatttttcatctcgtttcttagtgagttccac
tttgacgattttcgaaaaatagaagcctttcaagtgtttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNacattcgaaaaagtcgcaaagtggaatagacgttaat
tgcgtaaaaaaacgcggggTGACGGCTAGTATAGGCtagtttatcggtga
cccaaaaaactttttgtgttggaaaaaagcgcaggacacttttgtagcaa
agtgacatTAGATTGcctctaccgctacaatgcaacaacatcttttcgtc
aatttatattttgtacatgtaaaatacaagatatattgtactctttttaa
ccaatcaaattgctgatattttttggatcgccgataaaatgTCAtaatgt
acactttttttttataagaatacactttataagaatgttcatgatgaaaa
tggccaaaaaattaagaatatgctaagaatatcaccatcatggaattttg
ctactcaagctatataaagaatgccatttttagagcattttcaattataa
attatcaattacccccaagtaaggctcactcctttcaaaAAATGccatct
tatgcttgagacgtgtGTAccaaatgttaaatctagtctgagtTAGAACC
CTAGCCTAAGAATATGCTGTAGGATGAgtttaagatgattttcccaaaaa
agttaagaatatctatgatgaaatgggtttacaccattcttataaaaaaa
agcgtgtaaaggCTGTCTCTacaaatcataaaataaaaataaaaattgaa
cgTATAtacccaactggcacacaacgttgtttcaacgtttatctaacgtt
tgCCACGTCTATATAAttttagatgaacgttgaaacaacgttgtgtgtca
gctgggtaacAATTTCAAGAAAACTGCTTAGTTACTTTCCAATAGTTAGA
TTTGTTACCATTCAAAATAATTGCCAATTACGTTGAGTGCTATTTATTTC
GTGTTGATATAGACATTGGTAATGGTAGTTGGACATCATGGGCCTCCACA
ACAAATTGCTCAGAGCCCTGTGGAGGAGGGAACTACACACAACAGAGGAC
ATACAAAATGAATGAGCAATGCGAAGAAGAGTCTGGTTTCGAAGAAAGAT
ATCCTGATTGCAATACACAGTCGTGCCAAGGtcagttttattttcaacag
ttttttaACTcgctctctcttattcgatcttAAAGGGACCAAcaaatttc
ttcgaattagagaaggaTTGGAATTACAGAGAGAATGAAATACTACcttc
cagctgaggggaccaatgttttagtttgaattattcatgatatgtcttcc
aagattttttaaaaagttcaacccaatacgtcactttttctattgtttaa
gtgacgtattgggttgaactttatgaaaattctcagaagactctccagtg
ttgcatatcatgaatagaggtTTGGAATAGATAGAGTTGACTGTACTCCT
AAAGTGATATGAAAGCTGTCATTTCAGGGAACTTGCTGATGGTCACTTGT
CTCCAGACCGAGTTGATGTTTTCTGTTAATCTGGGGggactagggttgcg
agctgacggggggtaccgcctgactttcgaccctcggatcCTTACcgaga
ctaaaaaggagaaaacaaagaacaattttgtgaattttacgacccttacc
ggaccaaatttgaccaattttgaccaaattgcgctctttctgggggtaaa
aagttgaaattttcctatttctcctacccttagtgggactgaaatttgat
tttctgatttttccgacccttagcgggacttttgNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttg
gtaggatttgaagccaacaaatcctaccaaagttgcgcggccttgagcga
cccgcctggtttttacacaaatgacagattgaaactaagatttaccgctt
aattttgaaaaatatatcactcgaaaataaaggaattgctagattcaatc
cgtcatcaaaaatacggcgcatgttttaaggcttcaatttttcttacctg
agaaaggttagagattgacctctagcccttcgggcttgaaactcaatggg
cggcacataccgtaccctccatttacccaagtacccccccccccgggNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcccccccccccggggttaaTCTCGAGTGAAATGAGATTTAAAATAA
AGTCTGTTAAAGTCTTATTTTAAAGGTCACTCTATGATACTTTCACATTA
TGTAATTCATGATAttgatgacgtaatgttttctacggaattACACCGGT
TTTTGCGCCAGTAGTGACAAATTTTAAACAACTTTTGtatagtttaaatt
tgccactactggctaaaaccggggtatttccgtagaaaacattacgtcat
gaatatcatgattAGACTTACTCtttatgattttctttttgggTTTTATT
AGCTTCTTTTACTTTCCCAATTTTAGATGTCACTCACTTTATGTCTACCA
ATGAAGAAATGTTTAACAATGCTTCGAAGGATTGCGAAACAAAAGGAGGC
AGACTGGCAATATTCCCTGAAAAGTCTGATTGGGAAAGTTTTATCAAGTA
CGTTTGTTCAGACTACGTGTTGTTCCTGTTTTTtagcactttgagcctca
aattgttctcatCCCCGTTCGtaggaaaattattattttcattcTACTCT
TACTGATTTGAACTTGAAATTTAGCAATTTCAGTCttaggattgttctta
aattgtccTCATTTTTGTCATTTCAAGCCccactgttcttataaaattgt
gcTAATAAAAAAAGGTTGTATTATGTTACCTTTAAAACGCATGAAATGAT
TGGTTGCATCATAAGGTATTTTGTTTGCCCCAAGTTAAAAGGGTTAAGGT
TTTTAGGTGAAAATGACTTTGTCTGTTACGCTATCAGTTTATACCTAGAT
CAAATTTCTCGTCATCTGTTATATTGgttgttaagttacgtaatctcgct
gacctttatatatccctggaccaagctataccCGCCATCTTTGaacgaag
tttttttgaaagttgatacccgaaaagaagccattgtagtgtttaaAACT
TTGCCTAgcgacaaacggcgctacatcattagtgtagaagcgaaactaga
tctagcgctctctccgcgggtaccaatttcaaaaaaaactccgatcaaag
attttgcttggccggcattgagtaacttgatccagggatatataaaggtc
agagCGTAATCTCCACCAtaatggaagcaaacgttcgatttgcgcctctt
cagattcgaacgtttgcttctaTAATGGCGGGAATCTTTCTCTATGGGCA
TCGTGTAACTTGAccaaaaattattattattggtTAATTATTATCCACCT
CTTTATCCTTTTGTTATTCTTATGTTATTCTTATTCCAGTGAATCAAGAA
TTGAAGACGATTCTCAATATTGGAT Coding sequence (CDS) from alignment at scaffold_251:434430..438854+ >TCONS_00055165 ID=TCONS_00055165|Name=TCONS_00055165|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_251:434430..438854+ (Clytia hemisphaerica) GCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGATGA AAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTGGA CATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGAAC TACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAGTC TGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGATG TCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGAAG GATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCTGA TTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATATT GGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATGAT GAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGTTG GACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGGGA ACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAGAG TCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAAGA TGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTCGA AGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGTCT GATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAATA TTGGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGATG ATGAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTAGT TGGACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGAGG GAACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGAAG AGTCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCCAA GATGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCTTC GAAGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAAGT CTGATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTCAA TATTGGGCGAAATCACCACTGAATCAAACAGGTGTTTGGGAAAATTGTGA TGATGAAAAACGTTATATTTGCCAAGTTTCAAACAACATTGGTAATGGTA GTTGGACATCATGGGCCTCCACAACAAATTGCTCAGAGCCCTGTGGAGGA GGGAACTACACACAACAGAGGACATACAAAATGAATGAGCAATGCGAAGA AGAGTCTGGTTTCGAAGAAAGATATCCTGATTGCAATACACAGTCGTGCC AAGATGTCACTCACTTTATGTCTACCAATGAAGAAATGTTTAACAATGCT TCGAAGGATTGCGAAACAAAAGGAGGCAGACTGGCAATATTCCCTGAAAA GTCTGATTGGGAAAGTTTTATCAATGAATCAAGAATTGAAGACGATTCTC AATATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00055165-exon-scaffold_251-1491911889:434430..434510 | TCONS_00055165-exon-scaffold_251-1491911889:434430..434510 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1510915933:434430..434510 | TCONS_00055165-exon-scaffold_251-1510915933:434430..434510 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1575043694:434430..434510 | TCONS_00055165-exon-scaffold_251-1575043694:434430..434510 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1491911889:436092..436259 | TCONS_00055165-exon-scaffold_251-1491911889:436092..436259 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1510915933:436092..436259 | TCONS_00055165-exon-scaffold_251-1510915933:436092..436259 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1575043694:436092..436259 | TCONS_00055165-exon-scaffold_251-1575043694:436092..436259 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1491911889:437856..437976 | TCONS_00055165-exon-scaffold_251-1491911889:437856..437976 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1510915933:437856..437976 | TCONS_00055165-exon-scaffold_251-1510915933:437856..437976 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1575043694:437856..437976 | TCONS_00055165-exon-scaffold_251-1575043694:437856..437976 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1491911889:438819..438854 | TCONS_00055165-exon-scaffold_251-1491911889:438819..438854 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1510915933:438819..438854 | TCONS_00055165-exon-scaffold_251-1510915933:438819..438854 | Clytia hemisphaerica | exon |
TCONS_00055165-exon-scaffold_251-1575043694:438819..438854 | TCONS_00055165-exon-scaffold_251-1575043694:438819..438854 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_251 | supercontig | scaffold_251:434430..438854 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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