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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055236 ID=TCONS_00055236|Name=TCONS_00055236|organism=Clytia hemisphaerica|type=transcript|length=1218bp
CTCGTATCTCCTTCCTAACCATCAACTCAATCATCAGTATCGTCAATTTC
ATTATCAACATTTTTACAGTTTACTCAATCTATCggaccaatcaaatcaa
aaaccaGTCCATAAAACTCATTCTAATCGTGTCAATATCAAACGCTCTTT
TTGCAGTTTTCGGCCAATCAAGTCTCAGTATTTTATTATACAAAGGTGAC
CATTTAAGTTGCCCTGTTACGTGGATTCTATTGATTGTTATCGAATTTTG
TATGTATAGTTCACATTATTTGACAGGGATGCTTGGTTTTGATCGCTACA
TTAGAATCAAATATCAAAACAACTACCACCAAATTTATACTTCTTTCAGA
TTCTATATGAGCTTAAGTTTATTATACTTCATTATCAGCATCCAGGCAGC
TCTGGGAGCTATTGCCAGATTCAACAGATCATCATCCCTGGGATTCACCC
TACCTATCAATATTCTAATGTTCATGGCTGTTGCATTTTTTTACGGCAGA
TCAATCCAAACTTTACGCCAACACCAACAAAAATTACGtaaaaactcaat
tgtgaagtCATCAGTAAATTTAACCAGACTGGCAACTCTGTACATCACCA
CAAATGCCATATTTGCAGCACCTATTGTCGTTGTTCTCGCATATTATTTC
AAAAAGAGGGAAGATGCAGTGAACCAAGAAATAAAAGCTGTCATTTTCTA
CACAACTCTATTATTCTCAATCTTACATTGTCCAGTCAATGCAATCTGTT
TCTTGAAGGTCAATAGGCAAGCAAGAATGATGATTTCAACATTGATGGGA
AAAAGTATTCGTAAAGACAGCCAAGGAACGGAGCCTGGTGAGGAAATACA
ATTAGGATCGATTCGAAAATTTAGAAGCAATACGGTAGGATCAGAAACTT
CAACGCAAATGTGAGGTCAATCTCGTATCCAGAGCCACTTGCatcacttt
ttttaattttaccgATGAGCTTGACCattatcagaatcataaaaaagcga
ATTAAGGGACTTGAGTTTGATGTGAGgacaaactgttacaatgaccTTCT
TCCAACGTGCACAAGATAACTCAGTTGTTTCGGACTTTGAGACAATTTTT
TCACGGTGTTGACGGTGAGCCGTAAAAAGAATATAGAAAGAAGCGCAGAA
TCCGGAAACCCTTTGTGTGAAGGGCTAACACCTTAGATCACTCGGTAATT
ATATAACGTTACGGACCA Run BLAST on NCBI protein sequence of TCONS_00055236-protein >TCONS_00055236-protein ID=TCONS_00055236-protein|Name=TCONS_00055236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
RISFLTINSIISIVNFIINIFTVYSIYRTNQIKNQSIKLILIVSISNALF
AVFGQSSLSILLYKGDHLSCPVTWILLIVIEFCMYSSHYLTGMLGFDRYI
RIKYQNNYHQIYTSFRFYMSLSLLYFIISIQAALGAIARFNRSSSLGFTL
PINILMFMAVAFFYGRSIQTLRQHQQKLRKNSIVKSSVNLTRLATLYITT
NAIFAAPIVVVLAYYFKKREDAVNQEIKAVIFYTTLLFSILHCPVNAICF
LKVNRQARMMISTLMGKSIRKDSQGTEPGEEIQLGSIRKFRSNTVGSETS
TQM Run BLAST on NCBI transcript from alignment at scaffold_251:614593..615984- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055236 ID=TCONS_00055236|Name=TCONS_00055236|organism=Clytia hemisphaerica|type=transcript|length=1392bp|location=Sequence derived from alignment at scaffold_251:614593..615984- (Clytia hemisphaerica)
CTCGTATCTCCTTCCTAACCATCAACTCAATCATCAGTATCGTCAATTTC
ATTATCAACATTTTTACAGTTTACTCAATCTATCGGACCAATCAAATCAA
AAACCAGTCCATAAAACTCATTCTAATCGTGTCAATATCAAACGCTCTTT
TTGCAGTTTTCGGCCAATCAAGTCTCAGTATTTTATTATACAAAGGTGAC
CATTTAAGTTGCCCTGTTACGTGGATTCTATTGATTGTTATCGAATTTTG
TATGTATAGTTCACATTATTTGACAGGGATGCTTGGTTTTGATCGCTACA
TTAGAATCAAATATCAAAACAACTACCACCAAATTTATACTTCTTTCAGA
TTCTATATGAGCTTAAGTTTATTATACTTCATTATCAGCATCCAGGCAGC
TCTGGGAGCTATTGCCAGATTCAACAGATCATCATCCCTGGGATTCACCC
TACCTATCAATATTCTAATGTTCATGGCTGTTGCATTTTTTTACGGCAGA
TCAATCCAAACTTTACGCCAACACCAACAAAAATTACGTAAAAACTCAAT
TGTGAAGTCATCAGTAAATTTAACCAGACTGGCAACTCTGTACATCACCA
CAAATGCCATATTTGCAGCACCTATTGTCGTTGTTCTCGCATATTATTTC
AAAAAGAGGGAAGATGCAGTGAACCAAGAAATAAAAGCTGTCATTTTCTA
CACAACTCTATTATTCTCAATCTTACATTGTCCAGTCAATGCAATCTGTT
TCTTGAAGGTCAATAGGCAAGCAAGAATGATGATTTCAACATTGATGGGA
AAAAGTATTCGTAAAGGCAGCCAAGGAACGGAGCCTGGTGAAGAAATACA
ATTAGGATCAATTCGAAAATTTAGAAGCAATACGGTAGGATCAGAAACTT
CAACGCAAATGTGAGATCAATCTCGTATTCAGAGCCACCTGCATCACTTT
TTTTATTTTACCGATAAATGGGCTTGAGNTATTCGTAAAGACAGCCAAGG
AACGGAGCCTGGTGAGGAAATACAATTAGGATCGATTCGAAAATTTAGAA
GCAATACGGTAGGATCAGAAACTTCAACGCAAATGTGAGGTCAATCTCGT
ATCCAGAGCCACTTGCATCACTTTTTTTAATTTTACCGATGAGCTTGACC
ATTATCAGAATCATAAAAAAGCGAATTAAGGGACTTGAGTTTGATGTGAG
GACAAACTGTTACAATGACCTTCTTCCAACGTGCACAAGATAACTCAGTT
GTTTCGGACTTTGAGACAATTTTTTCACGGTGTTGACGGTGAGCCGTAAA
AAGAATATAGAAAGAAGCGCAGAATCCGGAAACCCTTTGTGTGAAGGGCT
AACACCTTAGATCACTCGGTAATTATATAACGTTACGGACCA Coding sequence (CDS) from alignment at scaffold_251:614593..615984- >TCONS_00055236 ID=TCONS_00055236|Name=TCONS_00055236|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_251:614593..615984- (Clytia hemisphaerica)
ACAGCCAAGGAACGGAGCCTGGTGAGGAAATACAATTAGGATCGATTCGA
AAATTTAGAAGCAATACGGTAGGATCAGAAACTTCAACGCAAATGTGACG
TATCTCCTTCCTAACCATCAACTCAATCATCAGTATCGTCAATTTCATTA
TCAACATTTTTACAGTTTACTCAATCTATCGGACCAATCAAATCAAAAAC
CAGTCCATAAAACTCATTCTAATCGTGTCAATATCAAACGCTCTTTTTGC
AGTTTTCGGCCAATCAAGTCTCAGTATTTTATTATACAAAGGTGACCATT
TAAGTTGCCCTGTTACGTGGATTCTATTGATTGTTATCGAATTTTGTATG
TATAGTTCACATTATTTGACAGGGATGCTTGGTTTTGATCGCTACATTAG
AATCAAATATCAAAACAACTACCACCAAATTTATACTTCTTTCAGATTCT
ATATGAGCTTAAGTTTATTATACTTCATTATCAGCATCCAGGCAGCTCTG
GGAGCTATTGCCAGATTCAACAGATCATCATCCCTGGGATTCACCCTACC
TATCAATATTCTAATGTTCATGGCTGTTGCATTTTTTTACGGCAGATCAA
TCCAAACTTTACGCCAACACCAACAAAAATTACGTAAAAACTCAATTGTG
AAGTCATCAGTAAATTTAACCAGACTGGCAACTCTGTACATCACCACAAA
TGCCATATTTGCAGCACCTATTGTCGTTGTTCTCGCATATTATTTCAAAA
AGAGGGAAGATGCAGTGAACCAAGAAATAAAAGCTGTCATTTTCTACACA
ACTCTATTATTCTCAATCTTACATTGTCCAGTCAATGCAATCTGTTTCTT
GAAGGTCAATAGGCAAGCAAGAATGATGATTTCAACATTGATGGGAAAAA
GTATTCGTAAAGACAGCCAAGGAACGGAGCCTGGTGAGGAAATACAATTA
GGATCGATTCGAAAATTTAGAAGCAATACGGTAGGATCAGAAACTTCAAC
GCAAATGTGACGTATCTCCTTCCTAACCATCAACTCAATCATCAGTATCG
TCAATTTCATTATCAACATTTTTACAGTTTACTCAATCTATCGGACCAAT
CAAATCAAAAACCAGTCCATAAAACTCATTCTAATCGTGTCAATATCAAA
CGCTCTTTTTGCAGTTTTCGGCCAATCAAGTCTCAGTATTTTATTATACA
AAGGTGACCATTTAAGTTGCCCTGTTACGTGGATTCTATTGATTGTTATC
GAATTTTGTATGTATAGTTCACATTATTTGACAGGGATGCTTGGTTTTGA
TCGCTACATTAGAATCAAATATCAAAACAACTACCACCAAATTTATACTT
CTTTCAGATTCTATATGAGCTTAAGTTTATTATACTTCATTATCAGCATC
CAGGCAGCTCTGGGAGCTATTGCCAGATTCAACAGATCATCATCCCTGGG
ATTCACCCTACCTATCAATATTCTAATGTTCATGGCTGTTGCATTTTTTT
ACGGCAGATCAATCCAAACTTTACGCCAACACCAACAAAAATTACGTAAA
AACTCAATTGTGAAGTCATCAGTAAATTTAACCAGACTGGCAACTCTGTA
CATCACCACAAATGCCATATTTGCAGCACCTATTGTCGTTGTTCTCGCAT
ATTATTTCAAAAAGAGGGAAGATGCAGTGAACCAAGAAATAAAAGCTGTC
ATTTTCTACACAACTCTATTATTCTCAATCTTACATTGTCCAGTCAATGC
AATCTGTTTCTTGAAGGTCAATAGGCAAGCAAGAATGATGATTTCAACAT
TGATGGGAAAAAGTATTCGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055236-exon-scaffold_251-1575043694:615169..615984 | TCONS_00055236-exon-scaffold_251-1575043694:615169..615984 | Clytia hemisphaerica | exon |
| TCONS_00055236-exon-scaffold_251-1575043694:614593..614994 | TCONS_00055236-exon-scaffold_251-1575043694:614593..614994 | Clytia hemisphaerica | exon |
| TCONS_00055236-exon-scaffold_251-1510915933:615169..615984 | TCONS_00055236-exon-scaffold_251-1510915933:615169..615984 | Clytia hemisphaerica | exon |
| TCONS_00055236-exon-scaffold_251-1510915933:614593..614994 | TCONS_00055236-exon-scaffold_251-1510915933:614593..614994 | Clytia hemisphaerica | exon |
| TCONS_00055236-exon-scaffold_251-1491911889:615169..615984 | TCONS_00055236-exon-scaffold_251-1491911889:615169..615984 | Clytia hemisphaerica | exon |
| TCONS_00055236-exon-scaffold_251-1491911889:614593..614994 | TCONS_00055236-exon-scaffold_251-1491911889:614593..614994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:614593..615984 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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