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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055241 ID=TCONS_00055241|Name=TCONS_00055241|organism=Clytia hemisphaerica|type=transcript|length=1979bpRun BLAST on NCBI transcript from alignment at scaffold_251:731619..737272- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055241 ID=TCONS_00055241|Name=TCONS_00055241|organism=Clytia hemisphaerica|type=transcript|length=5654bp|location=Sequence derived from alignment at scaffold_251:731619..737272- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055241 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.165e-29 Identity = 86/304 (28.29%), Postives = 138/304 (45.39%), Query Frame = 1
Query: 7 GSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFTGFQADFKTDICSHHIKQFPTRIQSPDFPFAYKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGCL-DYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHFHASKKKRLGWYLGFQANIKQKGIDECALGLH-SCTQACINYPGGFFCGCYLGYHTVYQKDSRIAECVDKDECAIKNGG 912
G+F++ FP+ YP C+W IS T ++ TS+ L K+ C DYVE+R+G +P + R+CG+ +P P+ +T L+V +S L F ++A C + + +IQSP++P Y+ ++C+W I +G + L F F E+++ C DY+E+ +G IG FCG P+ + SS N++ + F + GF AN ++ +DEC+ H C C+N G + C C GY DK C + GG
Sbjct: 360 GNFSAPGFPNGYPS--YSHCVWRISVTPGEKIVLNFTSMDLF------------KSRLCWYDYVEVRDGYWRKAPLLGRFCGDKIPEPLVSTDSRLWVEFRSS-----SNILGKGFFAAYEA-----TCGGDMNKDAGQIQSPNYPDDYRPSKECVWRITVSEGFHVGLTFQAF---EIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSDGSINKA---GFAANFFKE-VDECSWPDHGGCEHRCVNTLGSYKCACDPGYELA----------ADKKMCEVACGG 622 HSP 2 Score: 98.2117 bits (243), Expect = 4.851e-21 Identity = 66/231 (28.57%), Postives = 114/231 (49.35%), Query Frame = 1
Query: 1 VKGSFTSTNFPSRYPMDVKRDCIWIISTTQTKERNGKKTSLTLIFDQFHVGNEKNRKTGQCEDDYVEIREGKGFLSPYIVRYCGNTLPSPVTTTSGSLYVRLHTSGKNKNKKSLSPQMFTGFQADFKTDICSHHIKQFPTRIQSPDFPFA---YKKGQDCLWVIESDKGMQIELDFPFFSLRELDKERGC-LDYIEIHEGDGNSEKFIGRFCGTNSPKKIISSLNQIKIHF 681
V+G+ S N+P +YP +R+C W IS+T G + LT F++F + + +C D++E+ +G L+P + R+CG+ P P + S+++R ++ + K GFQA T+ + T+ F Y C WVI ++ G +EL F F E+++E C DY+E ++G +S +GRFCG+ ++I S+ + + I F
Sbjct: 783 VEGTLASPNWPDKYPS--RRECTWNISSTA-----GHRVKLT--FNEFEIEQHQ-----ECAYDHLEMYDGPDSLAPILGRFCGSKKPDPTVASGSSMFLRFYSDASVQRK---------GFQAVHSTECGGRLKAEVQTKELYSHAQFGDNNYPSEARCDWVIVAEDGYGVELTFRTF---EVEEEADCGYDYMEAYDGYDSSAPRLGRFCGSGPLEEIYSAGDSLMIRF 987 HSP 3 Score: 83.9593 bits (206), Expect = 1.485e-16 Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 1489 EQHCGRTFNITHGRFRTPGYPFRYPDSQSCVWTLHSPKRQRMKLRFVHFGLEAHKECQYDYVIVEEHFYNMPAVKLIGRFCGNKNPPKMIIDGGRSYFKVKFHSDETMSGKGFKAIF 1839
E CG +G +PG+P YP +++CVW + +P + R+ L+F F LE + C+YD+V V P KL GRFCG++ P +I + +V+F SD T+S +GF+A F
Sbjct: 617 EVACGGFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDVCKYDFVEVRSGL--SPDAKLHGRFCGSETPE--VITSQSNNMRVEFKSDNTVSKRGFRAHF 729 HSP 4 Score: 81.2629 bits (199), Expect = 8.905e-16 Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 1486 KEQHCGRTFNITHGRFRTPGYPFRYPDSQSCVWTLHSPKRQRMKLRFVHFGLEAHKECQYDYVIVEEHFYNMP--AVKLIGRFCGNKNPPKMIIDGGRSYFKVKFHSDETMSGKGFKAI 1836
KE C + G +P +P +YP + C W + S R+KL F F +E H+EC YD++ Y+ P ++GRFCG+K P + G + ++F+SD ++ KGF+A+
Sbjct: 772 KEAGCAHKISSVEGTLASPNWPDKYPSRRECTWNISSTAGHRVKLTFNEFEIEQHQECAYDHL----EMYDGPDSLAPILGRFCGSKKPDPTVASGSSMF--LRFYSDASVQRKGFQAV 884 The following BLAST results are available for this feature:
BLAST of TCONS_00055241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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