TCONS_00055243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055243
Unique NameTCONS_00055243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055243 ID=TCONS_00055243|Name=TCONS_00055243|organism=Clytia hemisphaerica|type=transcript|length=1128bp
GTTAAAGGTTCCTTCACGTCAACCAATTTCCCGTCACGTTACCCGATGGA
CGTCAAACGTGATTGCATATGGATTATCTCAACGACACAAACCAAAGAAC
GGAACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTTTCACGTC
GGCAACGAGAAAAACCGTAAAACGGGCCAATGTGAGGATGATTACGTAGA
AATACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGTTATTGCG
GCAATACATTACCGTCACCTGTTACAACGACGAGCGGCAGTTTATACGTC
AGACTCCACACGtcgggaaaaaataaaaataagaaatcattGTCGCCGCA
AATGTTCACTGGATTTCAAGCTGACTTTAAAACTGACAtCTGTTCACATC
ACATCAAACAATTTCCAACACGCATCCAGTCCCCCGATTTTCCATTCGCT
TACAAAAAAGGACAAGATTGTTTATGGGTTATCGAGTCTGACAAAGGAAT
GCAAATTGAACTCGATTTCCCATTCTTCTCATTAAGAGAATTGGACAAGG
AACGTGGTTGCCTCGATTATATTGAAATTCATGAGGGCGATGGTAACAGT
GAGAAATTTATCGGACGTTTCTGTGGTACAAATAGTCCGAAGAAAATTAT
TTCCTCGCTGAACCAAATCAAGATACATTTTCATGCcagcaaaaagaaaa
gattgGGATGGTATTTAGGATTCCAGGCTAACATCAAACAGAAAGACATC
GATGAATGTGCCCTTGGACTTCATTCATGCACGCAAGCCTGTATCAACTA
TCCTGGTGGTTTCTTCTGTGGTTGTTATTTGGGTTACCATACAGTCTATC
AGAAAGATTCAAGAATCGCTGAATGCGTGGACAAGGATGAATGTGCGATA
AAGAACGGAGGCTGTTCACACGCATGCGTGAATACAGCTGGAAGCTTCTT
GTGCGCATGTCCTAAAGGATACACACTGGCTGCTAACAAAACAACCTGTA
TAGATATCAACGAATGCCAGTTCAAGAAGCAACCATGTGACCATTTCTGC
ACCAATcagattggttctttcaaatgCTCTTGTAAAGATGGATACCTTCT
TCAAAATGACAACAAGACGTGTAACGAG
Run BLAST on NCBI

transcript from alignment at scaffold_251:733130..737272-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055243 ID=TCONS_00055243|Name=TCONS_00055243|organism=Clytia hemisphaerica|type=transcript|length=4143bp|location=Sequence derived from alignment at scaffold_251:733130..737272- (Clytia hemisphaerica)
GTTAAAGGTTCCTTCACGTCAACCAATTTCCCGTCACGTTACCCGATGGA CGTCAAACGTGATTGCATATGGATTATCTCAACGACACAAACCAAAGAAC GGAACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTTTCACGTC GGCAACGAGAAAAACCGTAAAACGGGCCAATGTGAGGATGATTACGTAGA AATACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGTTATTGCG GCAATACATTACCGTCACCTGTTACAACGACGAGCGGCAGTTTATACGTC AGACTCCACACGTCGGGAAAAAATAAAAATAAGAAATCATTGTCGCCGCA AATGTTCACTGGATTTCAAGCTGACTTTAAAACTGACAGTGAGTGATCGA TTTTAATTTTTTTATCCTTGATATACAGGGCGTGATTTTTTAAACGGAAA CAACCAAAAAAACTCNTTTAATTTTTTCATCCTTGGTATACAGGGCGTGA TTTTTTATACGGAAACAACCAAAAACACTTCGAAACAAAATGGTCTTCAA GGTACCAAGAATTCCCTTCGAATAATAGAAAGAATTACGGAGAGAGAGTG TTTTTATATGACATCCAGCGGAGCAGGCCAATGCTTTAGTTTGAATAACA GAGAGATTCGAATAATATAAGTTCGAATTAGAGTAAAAGTTGACTGTATA AAACTTGTGGCTAGTGTCTGGTGTTTTTCTGATGTGCTGTAAATATTTCA GTGACGACCTTTTGACGAGAAAATCAGTATTATATCTTCCTGGTCAAAAT TTAAATACACGTTTTTTTATAAGAACATCCAAAATTTTTGAAACCTTCGG ATACTCTTAAAGGGATAATCAGATGGTCTGAGATATTTTGCCTGCAGATA GCTTCTAGGATTTTAGGAAAAACCTCTAAATTTCTCGGTGTACTTATTTT CCTAACTAAAGTTATGCCACTTTGAAATTTTGAACCTTTGCTTGAAAACA ATAGAAAAAAGTGTGAAAAGTCCCTGAAAAGTCCCATTTTTCGAGATTTC AAATTGGCATAACTTGAGTTAGGAAAATAAGTACACCGAAAAATGTAGAG GTTTTTCCTAAAATCCTAGAAGCTATCTGCAGGCAAAATATCTCAGACCA TCTGATTATCCCTTTAACTTTTTGAGTTTTAAGCCTAAGAATGTTCTTAA CATGTTCTTATTTTCACCGTTTTTTGAGAATTTTTTTCCATTTTTCTAAT AAATCGGGTGTTTTAGAGTCTGCGAAGCCTTATGTTCTTAAACTTGTTCT TAGTATTTCGGCCATCGAAGCCTGATTTTCTTATATAGTTTGTTCTAATA AAAAACGTGTGCAAATCCAACTTTTTCTTCTCTTTCAGTCTGTTCACATC ACATCAAACAATTTCCAACACGCATCCAGTCCCCCGATTTTCCATTCGCT TACAAAAAAGGACAAGATTGTTTATGGGTTATCGAGTCTGACAAAGGAAT GCAAATTGAACTCGATTTCCCATTCTTCTCATTAAGAGAATTGGACAAGG AACGTGGTTGCCTCGATTATATTGAAATTCATGAGGGCGATGGTAACAGT GAGAAATTTATCGGACGTTTCTGTGGTACAAATAGTCCGAAGAAAATTAT TTCCTCGCTGAACCAAATCAAGATACATTTTCATGCCAGCAAAAAGAAAA GATTGGGATGGTATTTAGGATTCCAGGCTAACATCAAACAGAAAGGTATT AGCATTTTTGAATTTTTCAATCTCTTCAAAATAAAAATCAACAAATGATC TAAGTTCTAAGGTCCTCGTTTTTTGTTATCATCTATCATTTTAAAAGAAT GATTTTTAATTGGGGTCAAGATAAAAACCTTGCTCATTTCGTGCAGTCTT GTCTTCTTTATACGTTTTATGAGAAAATACCAAGTAGATAAGGCTCGCGT GTAATCGAAAGGAGTGATAGTCAAGTTAGTCAATCCTCCCATCAATTCAT AGATTCATAGATAGTTTAGCCAGCATGACGTGGCCTCCGTGAAAACAATA GAAAGACTGTCTAAAAGACCCAGATTAATGGGCTATCCACGTAAAATATT GACTCTTTCTATCTATATAAATTGTGGAAATCGAAAAAAGAATCAATATT TCCTAACCCCAGTTACCATTCTTTATCAATAGACATCGATGAATGTGCCC TTGGACTTCATTCATGCACGCAAGCCTGTATCAACTATCCTGGTGGTTTC TTCTGTGGTTGTTATTTGGGTTACCATACAGTCTATCAGAAAGATTCAAG AATCGCTGAATGCGTGGGTAAGTAACCCAGCTGACACACAACGTTGTTTC AACGTTCATCTAACGTTATATGGACGTTGTGAACGTTAGAAAAACGTTGA AACAACGTTGCGTGCCAGCTGGGAAGTGTTTATTGGAAGCGATCTTTCGT GATGAGATTCACAAAATGATAGATTCCTCAAGGTATTTAGGTAATGATGG CGCAGAATTGACGTTGTGTCTTTTGTCAGGCGTTGAAATCCGGGGGCGCT TGGTGCCACTTTTTACGTCAAAGAAAGTGTTTATTAGAAGTGAGCTTTTG TACTGAGATGTCCAAAATGATAGATTCCTCAAGGCACAATTGGCGCTGTG TCCGGGGGTTTGATGCCACTTCAAAGTCAAAAAGAGCCGCTTTTTCGAAG ACATTTAGCATTCCCTATTTTTTCCTGAGTACTTTCCCGTGATCCTAGTT AAAGGTTTTGTTTTTACATAAATGTTCCCGTTTCATATAAGACACATATC AGGACAGTATCTACCTATTGTTATGTTATGCTGATAAAAGCAAAAAATGT TGTTCTTTTCCTTTGACCAATCTTGCTCCACATCCGTGTCAATCCAATGT TAAAAAGCTTATGAATTAAAATTGACAAATAAACAAACTATATTACTCTT ATCTAAAAATAAAACCTTTAAGCCTTGAAAGGATTGAACTATTTTGACCC CATTTCTACGCTCTCGTTTTAGACAAGGATGAATGTGCGATAAAGAACGG AGGCTGTTCACACGCATGCGTGAATACAGCTGGAAGCTTCTTGTGCGCAT GTCCTAAAGGATACACACTGGCTGCTAACAAAACAACCTGTATAGGTAGG TGTCCCACAATGGGAAAGAAAAATTTTCCAGTTTCCAGTCTACGAAGGCC GAATGGCGTCAAAAGTCTGTATTGTGAGCTCATAAATGTTTTTTTCGTTT AAATAAAAATTTTTGTTTACTATATGCAATGATTAAATAATAAATTAAAA CATTACAATATTTAAATTGCTAGGAAATAAAATTCAAAATTAAAAACAAA TTGGAAACATGACACAAATAAATATAGTGTAAGAAAACTGAATCGCAATC CTGTCGAGATAGCACAACCTAGCGTGTCATGCCAGCCCCAAAAGCATAAG CAAAAGCAAATGGGAAAAGACGGTCAAAAAAATGTAACGACTTTCGACAT CTGACGTCATTAGACTCTGGTAACGACAAGCCAAACCCTTCGTACATGCA TCTTATGGATCGAGGAGTTATAGGGTTCTAATATAAGATATAATCTACCC TTCCCACAATATTCACTTTTCTATAGATATCAACGAATGCCAGTTCAAGA AGCAACCATGTGACCATTTCTGCACCAATCAGATTGGTTCTTTCAAATGC TCTTGTAAAGATGGATACCTTCTTCAAAATGACAACAAGACGTGTAACGG TAAGCTCAAATATTTGATAGATATCTGAAATTTTAAGATTATTTACTGAC TGACCTTTTGAAAAGATTTTCTTTGTTCTTAGCCCTCTCCGTACCAATGT TCAGTATATTTTTTATTGCAAAATTGCTTTGACAGGCCCAAGGCCTTATT TGTCATTTTAAGACTGAATCAATAAACCTCAAGGGAGTCTAAACTTTCTA AATCAATTTCCGAGTTTTCGCTTTGCAAATCTCGGAGTAGAGTATTGAGG ACAAAACGATTAAGTCTTTCTGTGCCACTAGAAATTTAATGTGTCTCTCT TTTGGGACAAGACTCTTAAAATATATATAGTGTTGAAGAACTCAATAACC ACAAACAATGTCCATAAATTGAATATTTCAACGATTTTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034792XLOC_034792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055243-exon-scaffold_251-1575043694:736885..737272TCONS_00055243-exon-scaffold_251-1575043694:736885..737272Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:735528..735884TCONS_00055243-exon-scaffold_251-1575043694:735528..735884Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:734956..735090TCONS_00055243-exon-scaffold_251-1575043694:734956..735090Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:734128..734250TCONS_00055243-exon-scaffold_251-1575043694:734128..734250Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:733524..733646TCONS_00055243-exon-scaffold_251-1575043694:733524..733646Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1575043694:733130..733131TCONS_00055243-exon-scaffold_251-1575043694:733130..733131Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:736885..737272TCONS_00055243-exon-scaffold_251-1510915933:736885..737272Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:735528..735884TCONS_00055243-exon-scaffold_251-1510915933:735528..735884Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:734956..735090TCONS_00055243-exon-scaffold_251-1510915933:734956..735090Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:734128..734250TCONS_00055243-exon-scaffold_251-1510915933:734128..734250Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:733524..733646TCONS_00055243-exon-scaffold_251-1510915933:733524..733646Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1510915933:733130..733131TCONS_00055243-exon-scaffold_251-1510915933:733130..733131Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:736885..737272TCONS_00055243-exon-scaffold_251-1491911889:736885..737272Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:735528..735884TCONS_00055243-exon-scaffold_251-1491911889:735528..735884Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:734956..735090TCONS_00055243-exon-scaffold_251-1491911889:734956..735090Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:734128..734250TCONS_00055243-exon-scaffold_251-1491911889:734128..734250Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:733524..733646TCONS_00055243-exon-scaffold_251-1491911889:733524..733646Clytia hemisphaericaexon
TCONS_00055243-exon-scaffold_251-1491911889:733130..733131TCONS_00055243-exon-scaffold_251-1491911889:733130..733131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:733130..737272 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (9.37903 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0479497 0.614452 0.0699569 0.111206 4.01063e-05 0.453692 4.53319e-05 0.525558 0.717883 0.205094 0 0 0.00652646 5.51412 1.56869 1.54568 0.536065 1.28087 2.00304 0.735674 2.70457 1.3739 0 1.05947 0.387888 9.10445e-07 1.58283 2.68325 3.5907 9.37903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Expect = 4.83e-22 / Id = 28.62Expect = 5.77e-31 / Id = 28.62Expect = 1.38e-20 / Id = 28.62SequenceTLL2
Match NameE-valueIdentityDescription
TLL25.774e-3128.62Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=... [more]
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