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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055248 ID=TCONS_00055248|Name=TCONS_00055248|organism=Clytia hemisphaerica|type=transcript|length=346bp
aaataacaaaattcttcagataaaaaatttggttcaaccaatcatcaaat
gGCTTGGCATCTTTGACGACAACCCGATGTTGACTGTGTTTTCAGCATCC
ATTTATATTGGTTGTCAATCACGTGATCTAAGTACTGGTATTTTTGTAGC
CGAATGAAGTTGATATTCAGTATACAATCAGTGGTACTGTTTTTCCATCA
AACGATCATGCAAATGatGAAGTTTATTGAACAAAAGAATTATTCAAAAA
CAATCCTCGATGGAGAATCGAGAATGAAATGAGATAATTCAATCTTTGTT
CATTCGATCGTGCTCttaaaatatcgatttttcATCGATGTCATCG Run BLAST on NCBI transcript from alignment at scaffold_251:839761..842748- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055248 ID=TCONS_00055248|Name=TCONS_00055248|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at scaffold_251:839761..842748- (Clytia hemisphaerica)
AAATAACAAAATTCTTCAGATAAAAAATTTGGTTCAACCAATCATCAAAT
GGCTTGGCATCTTTGACGACAACCCGATGTTGACTGTGTTTTCAGCATCC
ATTTATATTGGTTGTCAATCACGTGATCTAAGTACTGGTATTTTTGTAGC
CGAATGAAGTTGATATTCAGTATACAATCAGTGGTACTGTTTTTCCATCA
AACGATCATGCAAATGGTAATTTTGATTGATATAATGGGCTCTTCCAGAA
AAAAATTAATATGGGGGGTGGAGTATATAACATTTTTTGGAAATTTACCC
ACCCGGACAAAAAATCAACTGCAAAACCGTACAATGAGTTTTCAAAATGA
TCAGGTATGGCTGAGCACAATGATTCTCCTTTTTTAACCAAACCTTGTGG
CCGGATAGCTCAGTCGGTAAAGCATTCGCCTTACAATCTAAGGGTTGTGG
GTTCGATCCCGGTCACCGCCGACTCAGCATATGAGAAGCCTAGATGAGGT
AATTTGATCTAGGTGATAAGTTACTGGGAGCTCAGAGAGTAGGTGTTGCG
CTACTCCACCTCAACATTCGACCTCCCAGTTCTAGCGCAATTAAGAAAGG
GGATAGACTCTGGCGCTGCCGACAGCCACCATGTGAATATACTTGAAGAA
CATAAACGGGCTGTTGCATGAAGGTAAATTGTTCCAATGCAAAGAACGAT
TTTTGGACCTACCCCGGTGGGGTGAAGGTCCTATAAATTAACCCGTGTTC
GTTAGTTCGTTCGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAAT
TTTTCTGATTTTTTGCACAAAGGTGCATTACTATAAACCCTCGAATGTGA
CGGAGCCCGATTTTCGAAAAAAAAATTTTTCCGGCCGGTAGAACCGGAAA
TGTGCCGGAAATCGTCGTTTTTTCACATTTCCGTCACATTTTTTCAACTT
ATTTAATTGTTTCTTTACAGAAAAATGTTCTTTATGATGATGCCCAAAAC
TTAGCATCGTTTGATTTCCAAAAAAATCATCCTTTGAATCCGGAACTCCT
TAAAAATCGCCGGAACAGCCGAAAACCGGCGTAAAACGGTTTTCCTTCAT
TTTTTCAACTTATTTAATTGTTTCTTTACAGAAAAATGTTCTTTATGATG
ATGCCCAAAACTTAGCATCGTTTGATTTCCAAAAAAATCATCCTTTGAAT
CCGGAACTCCTTAAAAATCGCCGGAACAGCCGAAAACCGGCGTAAAACGG
TTTTCCTTCATTTTTTCAACTTATTTAATTGTTTCTTTACAGAAAAATGT
TCTTTATGATGATGCCCAAAACTTAGCATCGTTTGATTTCCAAAAAAATC
ATCCTTTGAATCCGGAACTCCTTAAAAATCGCCGGAACAGCCGAAAACCG
GCGTAAAACGGTTTTCCTTCATTTTTTCAACTTATTTAATTGTTTCTTTA
CAGAAAAATGTTCTTTATGATGATGCCCAAAACTTAGCATCGTTTGATTT
CCAAAAAAATCATCCTTTGAATCCGGAACTCCTTAAAAATCGCCGGAACA
GCCGAAAACCGGCGTAAAACGGTTTTCCTTCATTTTTTCAACTTATTTAA
TTGTTTCTTTACAGAAAAATGTTCTTTATGATGATGCCCAAAACTTAGCA
TCGTTTGATTTCCAAAAAAATCATCCTTTGAATCCGGAACTCCTTAAAAA
TCGCCGGAACAGCCGAAAACCGGCGTAAAACGGTTTTCCTTCATTTTTTC
AACTTATTTAATTGTTTCTTTACAGAAAAATGTTCTTTATGATGATGCCC
AAAACTTAGCATCGTTTGATTTCCAAAAAAATCATCCTTTGAATCCGGAA
CTCCTTAAAAATCGCCGGAACAGCCGAAAACCGGCGTAAAACGGTTTTCC
TTCATTTTTTCAACTTATTTAATTGTTTCTTTACAGAAAAATGTTCTTTA
TGATGATGCCCAAAACTTAGCATCGTTTGATTTCCAAAAAAATCATCCTT
TGAATCCGGAACTCCTTAAAAATCGCCGGAACAGCCGAAAACCGGCGTAA
AACGGTTTTCCTTCATTTTTTCAACTTATTTAATTGTTTCTTTACAGAAA
AATGTTCTTTATGATGATGCCCAAAACTTAGCATCGTTTGATTTCCAAAA
AAATCATCCTTTGAATCCGGAACTCCTTAAAAATCGCCGGAACAGCCGAA
AACCGGCGTAAAACGGTTTTCCTTCATTTTTTCAACTTATACTCGATAGA
TTTTCATGATTTTTTGCACAAAGGTGCATTACTATAAACCCTCGAATGTG
ACGGAGCCCGATTTTCGAAAAAAAAATTTTTCCGGCCGGAAGAACCGGAA
TTGTCCCGAAAAAAGCGGTTTTTTGAGATTTTCTCATTACTTCCATTAAA
TTCTAATTATTCGTTTTATAAATAGGTAGGTCCATTAAAGTATTACTTGT
TCAGTTGAGCATTGTTCCGATAGAGAAACAACGAACTGTTCATGATAGTA
TCAAAAGCTTTGTGTGTGGGAAAGATTTCTTAATTTGAACAGTGTCTCAA
AAGACGAGATGTTTATGATAGTATCAAGAGTGTTGTAATGCGTGTGGAAA
GGCCATCGTGACGAATCCTCGAAAACACTAACAAGAATTTCAAGGAACGA
ATTTAAATTTAAATAAGAATTGAAATAATAATAAAAAAACCGAAAGTCTC
CTGGCCTCTTTGCTTTGCTTTTCAATCTTGTTTTTAATATTCACTCGACT
GGCTTATTTAATTTTATAAGCTTAACCATCGTTAAATGTGCCGAAATACT
AGAAATGTTCATTTTACTTTGATCTCTTGTATAACTTTTTGTTTTTTTGT
TATTTTAGATGAAGTTTATTGAACAAAAGAATTATTCAAAAACAATCCTC
GATGGAGAATCGAGAATGAAATGAGATAATTCAATCTTTGTTCATTCGAT
CGTGCTCTTAAAATATCGATTTTTCATCGATGTCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055248-exon-scaffold_251-1575043694:842533..842748 | TCONS_00055248-exon-scaffold_251-1575043694:842533..842748 | Clytia hemisphaerica | exon |
| TCONS_00055248-exon-scaffold_251-1575043694:839761..839890 | TCONS_00055248-exon-scaffold_251-1575043694:839761..839890 | Clytia hemisphaerica | exon |
| TCONS_00055248-exon-scaffold_251-1510915933:842533..842748 | TCONS_00055248-exon-scaffold_251-1510915933:842533..842748 | Clytia hemisphaerica | exon |
| TCONS_00055248-exon-scaffold_251-1510915933:839761..839890 | TCONS_00055248-exon-scaffold_251-1510915933:839761..839890 | Clytia hemisphaerica | exon |
| TCONS_00055248-exon-scaffold_251-1491911889:842533..842748 | TCONS_00055248-exon-scaffold_251-1491911889:842533..842748 | Clytia hemisphaerica | exon |
| TCONS_00055248-exon-scaffold_251-1491911889:839761..839890 | TCONS_00055248-exon-scaffold_251-1491911889:839761..839890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:839761..842748 - |
Blast
The following BLAST results are available for this feature:
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