TCONS_00055286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055286
Unique NameTCONS_00055286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055286 ID=TCONS_00055286|Name=TCONS_00055286|organism=Clytia hemisphaerica|type=transcript|length=944bp
TCCCATCGAGCTTTGCAGCTCATAAAAGACATTTCATGTTTTAAACACGG
TATGCAATATTTATTTACAAAGAGATCACGAATCTATGATGCCAATGTCA
ATTTTAAGTGGGGTTTGTTTTTCTATATTAATAACATTCCATTACATGTT
GATgccattgattttaaagcctGAAGAGTTGgtggaatcttcaacctttc
tcaagcaagaagaAGTGAAGTCTTAATGTTTGCGCCGCGTTTAGAATGAC
GGATTAAATCTagtgctttctttgttttctttcagTGTATCTTCCTAAAT
CCAGTCATAGAATATAATTTCAATCCAGTAATTTCAATCCAGTGTTTGTG
CGAAAACCACGCGGTTCACATGTTTTCGATGGGAAATAGGTGGCTTCATT
TTCCATCCAAGAGTTTCGTATCTTTCCTCTTCCCGGGCTTTGAACTCAAT
CCTCGTGCTTCATTTTCGAAAGTTGAGCAATCACGCCGCTTTTTCAAACA
AAGACACGATGAATTAACGATTCGTCGGACTAAATAATAACATTCGCCGC
TGGTAGACAATACTGTAAACTGCACACGCTAAGGGTTTGCCCGCCTAGAA
TGAAGCATTCATCGAAgttactgtaagttggtctaatgtcaacattaCGA
ATCTAATTCTGTCAATcgtctttagagataggaataataagaagaaggtc
ggaatcgctgattgaaacgATATTTCTTTGGTTAGCGctcagagaggaaa
aaatcacttttccgACAGAGCAAAATCCCTGACGTTACTTGATTTGAGTT
AGGTAGCTATATGACAAACTGACGTAATGTTGTTAAGTGAGTCTTTGACC
TTATACTTTCTGACTCAGACACTCGGTGACAACATGCTAACAAGGAGTTC
ATTATATTTTTACCGTCAAATCATTTCTCAATTGTCATGTAACA
Run BLAST on NCBI

transcript from alignment at scaffold_251:745379..746322

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055286 ID=TCONS_00055286|Name=TCONS_00055286|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at scaffold_251:745379..746322 (Clytia hemisphaerica)
TGTTACATGACAATTGAGAAATGATTTGACGGTAAAAATATAATGAACTC CTTGTTAGCATGTTGTCACCGAGTGTCTGAGTCAGAAAGTATAAGGTCAA AGACTCACTTAACAACATTACGTCAGTTTGTCATATAGCTACCTAACTCA AATCAAGTAACGTCAGGGATTTTGCTCTGTcggaaaagtgattttttcct ctctgagCGCTAACCAAAGAAATATcgtttcaatcagcgattccgacctt cttcttattattcctatctctaaagacgATTGACAGAATTAGATTCGtaa tgttgacattagaccaacttacagtaacTTCGATGAATGCTTCATTCTAG GCGGGCAAACCCTTAGCGTGTGCAGTTTACAGTATTGTCTACCAGCGGCG AATGTTATTATTTAGTCCGACGAATCGTTAATTCATCGTGTCTTTGTTTG AAAAAGCGGCGTGATTGCTCAACTTTCGAAAATGAAGCACGAGGATTGAG TTCAAAGCCCGGGAAGAGGAAAGATACGAAACTCTTGGATGGAAAATGAA GCCACCTATTTCCCATCGAAAACATGTGAACCGCGTGGTTTTCGCACAAA CACTGGATTGAAATTACTGGATTGAAATTATATTCTATGACTGGATTTAG GAAGATACActgaaagaaaacaaagaaagcactAGATTTAATCCGTCATT CTAAACGCGGCGCAAACATTAAGACTTCACTtcttcttgcttgagaaagg ttgaagattccacCAACTCTTCaggctttaaaatcaatggcATCAACATG TAATGGAATGTTATTAATATAGAAAAACAAACCCCACTTAAAATTGACAT TGGCATCATAGATTCGTGATCTCTTTGTAAATAAATATTGCATACCGTGT TTAAAACATGAAATGTCTTTTATGAGCTGCAAAGCTCGATGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034829XLOC_034829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055286-exon-scaffold_251-1491911889:745379..746322TCONS_00055286-exon-scaffold_251-1491911889:745379..746322Clytia hemisphaericaexon
TCONS_00055286-exon-scaffold_251-1510915933:745379..746322TCONS_00055286-exon-scaffold_251-1510915933:745379..746322Clytia hemisphaericaexon
TCONS_00055286-exon-scaffold_251-1575043694:745379..746322TCONS_00055286-exon-scaffold_251-1575043694:745379..746322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:745379..746322 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144807 0 0 0 0 0.102876 0.0620575 0.348585 0.0406754 0.251915 0 0.0642938 0.385227 0.333385 0.383723 0.588276 1.01459 0.519961 0.0513111 0 0.933385 1.02436 0.0553443 0.352212 0.103649 0.138756 5.03017 5.01515 8.62555 12.7727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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