TCONS_00055298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055298
Unique NameTCONS_00055298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055298 ID=TCONS_00055298|Name=TCONS_00055298|organism=Clytia hemisphaerica|type=transcript|length=346bp
CACAGAGCCGGTGGGACGCCAGAATCCCAAtggaaaatttgccaaaaatt
tcgtccccggttgGAAAATACACTGAAAATTCAACCCCACTGGCGGAAAT
GAACTTCATTttatccccactcgaaattcaatgtttaaaaattacactcc
aaaGCCATCTGGATTTTTTATCTTTGGGACAACTCAATTTCTATccctat
tgggatttcaataggaattttcatccccactgaggaaaaagttccGTACT
ATCTTATATTTTGGCGATAACATACACAAACATTTTTTTACTCAATCACA
TGTTGAAACTCGATATTTTTTCCTGACATCatgttttcaattcttt
Run BLAST on NCBI

transcript from alignment at scaffold_251:901874..902219

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055298 ID=TCONS_00055298|Name=TCONS_00055298|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at scaffold_251:901874..902219 (Clytia hemisphaerica)
aaagaattgaaaacatGATGTCAGGAAAAAATATCGAGTTTCAACATGTG
ATTGAGTAAAAAAATGTTTGTGTATGTTATCGCCAAAATATAAGATAGTA
Cggaactttttcctcagtggggatgaaaattcctattgaaatcccaatag
ggATAGAAATTGAGTTGTCCCAAAGATAAAAAATCCAGATGGCtttggag
tgtaatttttaaacattgaatttcgagtggggataaAATGAAGTTCATTT
CCGCCAGTGGGGTTGAATTTTCAGTGTATTTTCcaaccggggacgaaatt
tttggcaaattttccaTTGGGATTCTGGCGTCCCACCGGCTCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034841XLOC_034841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055298-exon-scaffold_251-1491911889:901874..902219TCONS_00055298-exon-scaffold_251-1491911889:901874..902219Clytia hemisphaericaexon
TCONS_00055298-exon-scaffold_251-1510915933:901874..902219TCONS_00055298-exon-scaffold_251-1510915933:901874..902219Clytia hemisphaericaexon
TCONS_00055298-exon-scaffold_251-1575043694:901874..902219TCONS_00055298-exon-scaffold_251-1575043694:901874..902219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:901874..902219 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.517922	0.252528	0.293209	0	0	1.03108	0.332935	0.31169	0.436443	0.810907	0	0.689866	3.78899	3.21947	1.47047	1.57803	0.194401	0.597764	3.02809	4.03287	0.751134	1.46551	0.296919	0	1.66821	0.248139	0	0.378958	2.58684	0.585684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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