TCONS_00055303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055303
Unique NameTCONS_00055303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055303 ID=TCONS_00055303|Name=TCONS_00055303|organism=Clytia hemisphaerica|type=transcript|length=784bp
AAAACATCCTCCCAGTAGAAAGGAAACTATAAAGGCCGGTGTTCACTTTC
GTGCGAAGCGCGCAGCCATTGATTGGCTGTTGATGATGTAATGTTATCTT
TGGTTGTCACAACTTTTTAATAGTTGTTGACAAAAGAGTCTTTATATGTT
TTACGATGCTGCTTTCTGCGTCTTTgatatttgaattgaattgatacGGT
TAGAAAATTTATACGGCTTTGTAATTTTATTCCGTGGGGGCACTGGCCTT
GACGAGCGACTGGACGTGCCACTGGAGGTTTAAAATGGACCCTAATTTTT
GTCAAGATCTTTGCCAATTTCCTTAATTTTTGGACCCTGTCAGAgtcaaa
atatcgaaaatatcAACCCTGCCAGAGCCATATCttgaaattttgtgatt
ttgggaccctgtcagagatttcgaaaggttgaagaagaAGGGACCCTGCT
CAGCAGCACGTCCATgtacccatttttgcctaagttcCTCCCCCCCCTTC
CTGGGATTATATTCTGGAAACAAGGTTTTGAAAGAAATGTTAACCTCCGT
TTTTTATACTCTAgaatgtaaaattttgaaataaacattTACCTGTTCGA
TCGGATGGTGGTAATACTTTGTAATTTGCAACACCATACATTGACAAATT
TCCGAGTTCTTGCGTTAGCCTCGAGATTATTTCATCCAGAACAATTCCAG
TAGAATTCGTTTGTCGCACAACTTCATCAATAACCTGCAATTATGATTTA
AACATTTAAATAagataaaagtcaaaatatgaac
Run BLAST on NCBI

transcript from alignment at scaffold_252:3278..4061

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055303 ID=TCONS_00055303|Name=TCONS_00055303|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at scaffold_252:3278..4061 (Clytia hemisphaerica)
gttcatattttgacttttatctTATTTAAATGTTTAAATCATAATTGCAG
GTTATTGATGAAGTTGTGCGACAAACGAATTCTACTGGAATTGTTCTGGA
TGAAATAATCTCGAGGCTAACGCAAGAACTCGGAAATTTGTCAATGTATG
GTGTTGCAAATTACAAAGTATTACCACCATCCGATCGAACAGGTAaatgt
ttatttcaaaattttacattcTAGAGTATAAAAAACGGAGGTTAACATTT
CTTTCAAAACCTTGTTTCCAGAATATAATCCCAGGAAGGGGGGGGAGgaa
cttaggcaaaaatgggtacATGGACGTGCTGCTGAGCAGGGTCCCTtctt
cttcaacctttcgaaatctctgacagggtcccaaaatcacaaaatttcaa
GATATGGCTCTGGCAGGGTTgatattttcgatattttgacTCTGACAGGG
TCCAAAAATTAAGGAAATTGGCAAAGATCTTGACAAAAATTAGGGTCCAT
TTTAAACCTCCAGTGGCACGTCCAGTCGCTCGTCAAGGCCAGTGCCCCCA
CGGAATAAAATTACAAAGCCGTATAAATTTTCTAACCgtatcaattcaat
tcaaatatcAAAGACGCAGAAAGCAGCATCGTAAAACATATAAAGACTCT
TTTGTCAACAACTATTAAAAAGTTGTGACAACCAAAGATAACATTACATC
ATCAACAGCCAATCAATGGCTGCGCGCTTCGCACGAAAGTGAACACCGGC
CTTTATAGTTTCCTTTCTACTGGGAGGATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034845XLOC_034845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055303-exon-scaffold_252-1491911889:3278..4061TCONS_00055303-exon-scaffold_252-1491911889:3278..4061Clytia hemisphaericaexon
TCONS_00055303-exon-scaffold_252-1510915933:3278..4061TCONS_00055303-exon-scaffold_252-1510915933:3278..4061Clytia hemisphaericaexon
TCONS_00055303-exon-scaffold_252-1575043694:3278..4061TCONS_00055303-exon-scaffold_252-1575043694:3278..4061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_252supercontigscaffold_252:3278..4061 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0617004	0	0.0698604	0.0683475	0.166413	0	0	0	0.155981	0.0644027	0.312554	0.205461	0.041035	0.127846	0.0350355	0.075197	0.231591	0.189899	0.131178	0.205902	0.0596555	0.0872935	0.212233	0	0.331225	0.236488	0	0.361165	0	0.139546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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