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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055306 ID=TCONS_00055306|Name=TCONS_00055306|organism=Clytia hemisphaerica|type=transcript|length=912bp
gggatgtggttgttgttgtctttttctttttaattatggCTGTTGCTGTT
ggcgtttttctttttttggcaGCCATCGCCAATGTAGCCGCCCTTTCTTc
gtcataaaaaaaaaacattttgctaaaATTAGTTAGCTAAAAGTAGAACG
AGAGTAATCAGGATTAAaagaaaaaggttgaaattacCGTAAGTGGATAA
ATTTATCCATGAAAGAGGAAATAGCTTTTTTGTTCCGTCCAATGTTGAAG
CAAATTCACTCAACTGATCTTTATGGTAGAAGGCTGCTCCACCTAATACA
AATATAATATTTAAGCGATGGTGAAGAAAAGAAACCATCCTATCAACTAT
TTCTCTCTTTTTCAAAACGCTCTCCACTCTTCCGCTTTTCCGCTCTTTTT
ATCACCATGGTTGTATGTTGTCAGTTTGGACAATTCATAAAGCAGGCTGT
AAGTTCTAGATTGAGTTGCTTTCTGCCATGTGTACTACCTTCCTCTGCTA
CTGCTTTTTCCCACTCTATTAAAGCATTTTCAGCATAAACCCCAAGATTA
TGTATAATATGCAGACCACAAAAGAAGTGGTGAATNCCCCCATGTGTACT
ACCTTCCTCTGCTACTGCTTTTTCCCACTCTATTAAAGCATTTTCAGCAT
AAACCCCAAGATTATGTATAATATGCAGACCACAAAACAAGTGATGAATA
GTTGAAGTTGAAACATCTTTTTTCTCTTCTTCAGGTAAGAGGTTGTAGTT
TTCAATAACTTTTGGTAAGATGCCTTCCCTATACTtctgaaatttttgat
gaaaagttAAGTTTGCAATTGTTCTATCCGTCATCAATACTTTAATAGAG
TGAATCAGTTTATTCTTTACAGATTCTGCGTTTGGTGATGGTAATGTCTC
TGACATCAGGGT Run BLAST on NCBI protein sequence of TCONS_00055306-protein >TCONS_00055306-protein ID=TCONS_00055306-protein|Name=TCONS_00055306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
TLMSETLPSPNAESVKNKLIHSIKVLMTDRTIANLTFHQKFQKYREGILP
KVIENYNLLPEEEKKDVSTSTIHHLFCGLHIIHNLGVYAENALIEWEKAV
AEEGSTHGXIHHFFCGLHIIHNLGVYAENALIEWEKAVAEEGSTHGRKQL
NLELTACFMNCPN Run BLAST on NCBI transcript from alignment at scaffold_252:16328..17239 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055306 ID=TCONS_00055306|Name=TCONS_00055306|organism=Clytia hemisphaerica|type=transcript|length=912bp|location=Sequence derived from alignment at scaffold_252:16328..17239 (Clytia hemisphaerica)
ACCCTGATGTCAGAGACATTACCATCACCAAACGCAGAATCTGTAAAGAA
TAAACTGATTCACTCTATTAAAGTATTGATGACGGATAGAACAATTGCAA
ACTTaacttttcatcaaaaatttcagaAGTATAGGGAAGGCATCTTACCA
AAAGTTATTGAAAACTACAACCTCTTACCTGAAGAAGAGAAAAAAGATGT
TTCAACTTCAACTATTCATCACTTGTTTTGTGGTCTGCATATTATACATA
ATCTTGGGGTTTATGCTGAAAATGCTTTAATAGAGTGGGAAAAAGCAGTA
GCAGAGGAAGGTAGTACACATGGGGGNATTCACCACTTCTTTTGTGGTCT
GCATATTATACATAATCTTGGGGTTTATGCTGAAAATGCTTTAATAGAGT
GGGAAAAAGCAGTAGCAGAGGAAGGTAGTACACATGGCAGAAAGCAACTC
AATCTAGAACTTACAGCCTGCTTTATGAATTGTCCAAACTGACAACATAC
AACCATGGTGATAAAAAGAGCGGAAAAGCGGAAGAGTGGAGAGCGTTTTG
AAAAAGAGAGAAATAGTTGATAGGATGGTTTCTTTTCTTCACCATCGCTT
AAATATTATATTTGTATTAGGTGGAGCAGCCTTCTACCATAAAGATCAGT
TGAGTGAATTTGCTTCAACATTGGACGGAACAAAAAAGCTATTTCCTCTT
TCATGGATAAATTTATCCACTTACGgtaatttcaacctttttcttTTAAT
CCTGATTACTCTCGTTCTACTTTTAGCTAACTAATtttagcaaaatgttt
tttttttatgacgAAGAAAGGGCGGCTACATTGGCGATGGCtgccaaaaa
aagaaaaacgccAACAGCAACAGccataattaaaaagaaaaagacaacaa
caaccacatccc Coding sequence (CDS) from alignment at scaffold_252:16328..17239 >TCONS_00055306 ID=TCONS_00055306|Name=TCONS_00055306|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_252:16328..17239 (Clytia hemisphaerica)
ACCCTGATGTCAGAGACATTACCATCACCAAACGCAGAATCTGTAAAGAA
TAAACTGATTCACTCTATTAAAGTATTGATGACGGATAGAACAATTGCAA
ACTTaacttttcatcaaaaatttcagaAGTATAGGGAAGGCATCTTACCA
AAAGTTATTGAAAACTACAACCTCTTACCTGAAGAAGAGAAAAAAGATGT
TTCAACTTCAACTATTCATCACTTGTTTTGTGGTCTGCATATTATACATA
ATCTTGGGGTTTATGCTGAAAATGCTTTAATAGAGTGGGAAAAAGCAGTA
GCAGAGGAAGGTAGTACACATGGGGGNATTCACCACTTCTTTTGTGGTCT
GCATATTATACATAATCTTGGGGTTTATGCTGAAAATGCTTTAATAGAGT
GGGAAAAAGCAGTAGCAGAGGAAGGTAGTACACATGGCAGAAAGCAACTC
AATCTAGAACTTACAGCCTGCTTTATGAATTGTCCAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055306-exon-scaffold_252-1491911889:16328..17239 | TCONS_00055306-exon-scaffold_252-1491911889:16328..17239 | Clytia hemisphaerica | exon |
| TCONS_00055306-exon-scaffold_252-1510915933:16328..17239 | TCONS_00055306-exon-scaffold_252-1510915933:16328..17239 | Clytia hemisphaerica | exon |
| TCONS_00055306-exon-scaffold_252-1575043694:16328..17239 | TCONS_00055306-exon-scaffold_252-1575043694:16328..17239 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_252 | supercontig | scaffold_252:16328..17239 . |
Blast
The following BLAST results are available for this feature:
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