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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055307 ID=TCONS_00055307|Name=TCONS_00055307|organism=Clytia hemisphaerica|type=transcript|length=1956bp
AAAACATTGTGAGAACTGTTCAGCATTACCTCGGCACCTTGTGAGCTAGA
TACCAAATTCATTTCAGCTAAAAATTCAGCAACTAAAGACTTACAAGGCA
ACCTATAACATTTAANACTGTTCAGCATTACCTCGGCACCTTGTGAGCTA
GATACCAAATTCATTTCAGCTAAAAATTCAGCAACTAAAGACTTACAAGG
CAACCTATAACATTTAATTCCAGAAAGTTGATCTAACACAGCTTCGATCG
CAAGAGAAACACTTTCCACGGCGATATTCATTTTGAGTAATTGATAACAG
AGGGAGTGGATCTTTTCATCGTATTAGCCAttagaaaaaacatttattgt
CTCCTATTCTTTCAACGATTCGTACTTTTGCTTGAGCTCTTTATTTAGAT
TCTCTAAATAACTAATGCGCCCCTTCTGCTGCTTCATCTTATCTAGGTCT
TTACGGGGTACATTTTCTAAAtgccaaactttttttctattttttttcag
cCATGTTCTTGTAAAGTTCAACGTCAGTTTCTAACTTTAAGACCTTCTCG
GTCAATTCAATTTTCTTATCATTTCTTCTGTCTATTCTCTGATTgagtat
tttcattttgttataaAATCCTTTACGGATTTCTTGTTTAGTGACATTGA
GCAGTTTATTTTTGGTTTTGTAAAGAGTTAATTGGTATTTAAGGTTTCTT
GTTTTCATGCACAGCAAATTCAGAAAatcttattttaagaaaaaaaaaat
ttgttttgagccaaaaaattcTAGTCAGAATAGTAAGAAATAGATGACTT
GATAAGAATCTATTTTCTTACTTCAATTTTCTCGTTTCAAGAAATAAAAA
GCTTGTTTTAAGATGTCGTTTTTATCTTTACACATAAAAGCTAAAAATAT
AAATCTAGGATAAAATATATACCGTTAAAATCTAGGATAAAATATGCTGC
CGTTTTTAATGACATTTAAAAAAGAATGGTGTTAGCTAGCGGTACTCTCG
GGTCCTTGATAAACATACAGgcgagaaatcagagctaaaataagTAAACG
TACAGGCTAAAATAGGGGCCTGCCACgcttttcaaaacttaaaactttgg
aactttgatatgttttgatgaAAGCTCGAAGTCAAACGTTCGAGTTTATa
gcaaatcgttcaaatttaTATGTGTCACATTTCGAAATCTCCCACAACAC
GTTTAAATGTAATTAATGGCCTTTCTGCACTCcttgaataaaaaataaca
attttttcaGCAATAATATTGGGTCAAAATAGATTAacgtacaggaggga
ataaacgtaaaggcgggaaaattcttcaaaaaaaattaggcaACGTATAG
ACCCTAGTAAGGTGCGTACAGCACGGGGAGGGGGAATAGGGTTAATACAA
AGCAAAAAAACTAGAAGACTAGAAGTTCGAAATATCGTTACTTATTCAGT
GATTAAATTCATTCACCTTTCGTCACGCGTCATGGCATCCATTCGCCACA
TCGTCCGGGCCAAtgcgcaaaaatcttcaaatttccGATGGTTGCTATCA
TGAGTTTTATGAGATGGATCGCATTCATTCTTGTATTTCCTCTTCATGGC
CCTCAACGCATTGTTTATTGTGGTCCAGTCGTCTTTGATGACGGGTTCGA
GCATATCCAACCTCTTGAAACCATAAGATCTTGCAGATTTGAGATCTTTG
AGGACCGCGTCTTGATTTTGTTAGTTTTGTCTGATGTCGATTCCCTGTCG
TCTTCACCTCTGATGAACTTCTTCGCAACAAAGACAATACAGAGTATTTT
GCGTCTACTCAGGGGGTGTTCTTTTGAATGATACCAATCTATTGAAAAGA
ACATTTTCATAGTCCATTGTCATTCTTCTCTCTTGATACTCgttcatttc
aaaaaaaaattcaaataactcTTTCATCTTTCAACATTTTGGTACAAAAA
TTCCCG Run BLAST on NCBI transcript from alignment at scaffold_252:18687..20642 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055307 ID=TCONS_00055307|Name=TCONS_00055307|organism=Clytia hemisphaerica|type=transcript|length=1956bp|location=Sequence derived from alignment at scaffold_252:18687..20642 (Clytia hemisphaerica)
CGGGAATTTTTGTACCAAAATGTTGAAAGATGAAAgagttatttgaattt
ttttttgaaatgaacGAGTATCAAGAGAGAAGAATGACAATGGACTATGA
AAATGTTCTTTTCAATAGATTGGTATCATTCAAAAGAACACCCCCTGAGT
AGACGCAAAATACTCTGTATTGTCTTTGTTGCGAAGAAGTTCATCAGAGG
TGAAGACGACAGGGAATCGACATCAGACAAAACTAACAAAATCAAGACGC
GGTCCTCAAAGATCTCAAATCTGCAAGATCTTATGGTTTCAAGAGGTTGG
ATATGCTCGAACCCGTCATCAAAGACGACTGGACCACAATAAACAATGCG
TTGAGGGCCATGAAGAGGAAATACAAGAATGAATGCGATCCATCTCATAA
AACTCATGATAGCAACCATCggaaatttgaagatttttgcgcaTTGGCCC
GGACGATGTGGCGAATGGATGCCATGACGCGTGACGAAAGGTGAATGAAT
TTAATCACTGAATAAGTAACGATATTTCGAACTTCTAGTCTTCTAGTTTT
TTTGCTTTGTATTAACCCTATTCCCCCTCCCCGTGCTGTACGCACCTTAC
TAGGGTCTATACGTtgcctaattttttttgaagaattttcccgcctttac
gtttattccctcctgtacgtTAATCTATTTTGACCCAATATTATTGCtga
aaaaattgttattttttattcaagGAGTGCAGAAAGGCCATTAATTACAT
TTAAACGTGTTGTGGGAGATTTCGAAATGTGACACATAtaaatttgaacg
atttgctATAAACTCGAACGTTTGACTTCGAGCTTtcatcaaaacatatc
aaagttccaaagttttaagttttgaaaagcGTGGCAGGCCCCTATTTTAG
CCTGTACGTTTActtattttagctctgatttctcgcCTGTATGTTTATCA
AGGACCCGAGAGTACCGCTAGCTAACACCATTCTTTTTTAAATGTCATTA
AAAACGGCAGCATATTTTATCCTAGATTTTAACGGTATATATTTTATCCT
AGATTTATATTTTTAGCTTTTATGTGTAAAGATAAAAACGACATCTTAAA
ACAAGCTTTTTATTTCTTGAAACGAGAAAATTGAAGTAAGAAAATAGATT
CTTATCAAGTCATCTATTTCTTACTATTCTGACTAgaattttttggctca
aaacaaattttttttttcttaaaataagatTTTCTGAATTTGCTGTGCAT
GAAAACAAGAAACCTTAAATACCAATTAACTCTTTACAAAACCAAAAATA
AACTGCTCAATGTCACTAAACAAGAAATCCGTAAAGGATTttataacaaa
atgaaaatactcAATCAGAGAATAGACAGAAGAAATGATAAGAAAATTGA
ATTGACCGAGAAGGTCTTAAAGTTAGAAACTGACGTTGAACTTTACAAGA
ACATGgctgaaaaaaaatagaaaaaaagtttggcaTTTAGAAAATGTACC
CCGTAAAGACCTAGATAAGATGAAGCAGCAGAAGGGGCGCATTAGTTATT
TAGAGAATCTAAATAAAGAGCTCAAGCAAAAGTACGAATCGTTGAAAGAA
TAGGAGacaataaatgttttttctaaTGGCTAATACGATGAAAAGATCCA
CTCCCTCTGTTATCAATTACTCAAAATGAATATCGCCGTGGAAAGTGTTT
CTCTTGCGATCGAAGCTGTGTTAGATCAACTTTCTGGAATTAAATGTTAT
AGGTTGCCTTGTAAGTCTTTAGTTGCTGAATTTTTAGCTGAAATGAATTT
GGTATCTAGCTCACAAGGTGCCGAGGTAATGCTGAACAGTNTTAAATGTT
ATAGGTTGCCTTGTAAGTCTTTAGTTGCTGAATTTTTAGCTGAAATGAAT
TTGGTATCTAGCTCACAAGGTGCCGAGGTAATGCTGAACAGTTCTCACAA
TGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055307-exon-scaffold_252-1491911889:18687..20642 | TCONS_00055307-exon-scaffold_252-1491911889:18687..20642 | Clytia hemisphaerica | exon |
| TCONS_00055307-exon-scaffold_252-1510915933:18687..20642 | TCONS_00055307-exon-scaffold_252-1510915933:18687..20642 | Clytia hemisphaerica | exon |
| TCONS_00055307-exon-scaffold_252-1575043694:18687..20642 | TCONS_00055307-exon-scaffold_252-1575043694:18687..20642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_252 | supercontig | scaffold_252:18687..20642 . |
Blast
The following BLAST results are available for this feature:
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