TCONS_00055318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055318
Unique NameTCONS_00055318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055318 ID=TCONS_00055318|Name=TCONS_00055318|organism=Clytia hemisphaerica|type=transcript|length=1727bp
GTTGGCGGGAATCCTCTCAAGCGACAAAAACAAGACAAAACCACCAGAAA
CACTCATAGTCTCATATACTATACTATACCTACCATTTGACCATACCAGT
ACTGACTCATACACATCATACGCAACACAACAACTACAGCCAACAGCTTT
ACTACACAGAACGATCTGGTCCAACAGCTATAACAAAGAAAAGCCTGCTT
GCTAGATTAAAGGACTTTTATATGCTAGTCTGTTAAAACAGAACTTTATC
ATGTTACGTCTGCAAGCATATCGCAACTTTTCCAAACAAATAAGAAGATT
TGTCCAGCCAGCAGCCTCTTATGAAGAATTCAATGATATTAAGagtgaaa
atcttgaaatccACCATACAAAATATCCAAAAGAAAAGCCTGATCCTGAG
AACTTACCCTTTGCTAAAATCATGTCTGATCATATGTTGGTGATTGAATG
GTTTAAAGGTTATGGTTGGAGTTCTCCTATTATCAAAACCCATGAGCCAC
TAATGTTGCACCCTGGAGCAGGAGCTTTACAATATGGTAGTCAAATTTAT
GAAGGAATGAAAGCATATCATGGTGTTGATGGTCAGATACGGATGTTTCG
TCCAGAATGTAACATGGATAGGTTTTGGAAATCAGCTCACAGGATGGCTT
TACCAACGTTCAACCAAAAAGAATTGTTACAGTGTATTCACGCACTCGTC
AATTTGGAGAGAGACTGGGTTCCAAGACAAGAAGGGAAATCATTATACAT
TCGCCCAACTTTGATAGGTTTGGATCCTGCTTCagacattaatgatatca
aACGTGCCCTTTTGTTTGTAATCACCTCACCAAGCGGCCCTTACTTCCCT
GGTGGTAAGATGCGACCTGTATCTTTACTTGCGAACCCACAACATGTGCG
ATCATGGTATGGTGGTATTGGAGAGGTCAAAGCTGGTGGAAACTATGGAC
CTACATTGTATTTACAAAGAGAAGCCATGAGTAAAGACTGTGATCAAGTG
CTCTGGCTATATGAAGATCAGGTAACAGAAGCAGGAGGCATGAACATTTT
CGTTCATTGGATTAATGACAATGGAGACGAAGAATTACTAACGGCACCAT
TGAACTCGTTGATTTTGCCAGGAATCACCCGCCAATCATGCATAGAGATT
GCTAAAGAATGGgGAAATGTTCTTGTTACGGAAAAAGAATTCACAATTCA
AGAAGTCGTCAAAGCCAGTCATCAAAACAGgaTCAAGCACATTTTTGCTT
GTGGTACAGCAGCTGTGATATGTCCAGTCAATCGATTGGTGTACGAACCC
CTTGATGGATCCAAAGAGgagTTAACGATTCCGTACGATATGACAGATGA
TTCGTTGATGATGAAACTTTACAATGAACTTTTCAGTATACAGtTTGGTA
AGAAGCCACACCCTTGGGTTTACAATGTGAACTAAAAGTAAACACGTCTT
GATACCAAAACGAGAGAAAGTCTCCTGGTGTTATGattgtCTGGATAGTA
TTTACCGTAATTACCGATTGTAGATTTATGgatttttacatatctacaca
tatggtggAAATAAGTGCGAGATAGGCCTGGTATTATCTATGGTTATTTA
ATTGCCATCATTTAAGGGGAAAGCTTATATCAAATTTATTAGATTTAACT
AAAGTATATTTTAAAGTATTTATATGGATTTATTTAGAGATTAATGATTT
ATGTGTTAAAAGATTCATCTAAAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_253:125546..139773+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055318 ID=TCONS_00055318|Name=TCONS_00055318|organism=Clytia hemisphaerica|type=transcript|length=14228bp|location=Sequence derived from alignment at scaffold_253:125546..139773+ (Clytia hemisphaerica)
GTTGGCGGGAATCCTCTCAAGCGACAAAAACAAGACAAAACCACCAGAAA
CACTCATAGTCTCATATACTATACTATACCTACCATTTGACCATACCAGT
ACTGACTCATACACATCATACGCAACACAACAACTACAGCCAACAGCTTT
ACTACACAGAACGATCTGGTCCAACAGCTATAACAAAGAAAAGCCTGCTT
GCTAGATTAAAGGACTTTTATATGCTAGTCTGTTAAAACAGAACTTTATC
ATGTTACGTCTGCAAGCATATCGCAACTTTTCCAAACAAATAAGAAGATT
TGTCCAGCCAGCAGCCTCTTATGAAGAATTCAATGATATTAAGGTACCAA
GAAATTAAATTCAAGTTTAAATTATGCAGCTTTTTTTTACTAAATAGCTA
CACACACTTAAACTTTTTAAACCATCTCAACCCACTCAGCACTCTCAAGA
TTTGTTTAATCCATATtgccagacgatgtcaatcgaacggaatagacctt
ttttcaaagaggatgtcctgttgaataattatgtagtccagccataaaaa
caatgatagagccatgcataattactgtatcatgNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
gcatattgtaataattatgcatggttttatcattgtttttctgctggact
acataattattcaacagggtggcctctttgaaaaaaggtctatcgaacga
aaattccaatcgaatGAATCAAAcgcaatacacctttcccgtgattcgta
aaactaatgcgcgcgcattattttgatgctctccaccgtttggtctctgg
aggtagacaaacccgtttttgcctgcgttcccttagggaaagttggtttt
ttgagcttttcttaagttctgtcgaacaaaattccctcaaattttagtat
gttcaatctattcatgatattataccaccctgaaaatattttgccaaaag
aagattgctgtcaaaagttagaggctAAAATTCCACTTTCCCTagcccct
cgcaggcaaaaacgcattttttacctcccaaacaattttatacacaacag
tGGAGCGCACATtctcccgggccatttctgagaactttgaattacgggaa
aggtgtatcgaacgcaatcaaatgattgcgattcgattgccgaacgcaat
cgaatatcaatcgaacgtaaaattctgggtaaaattcgattgattcgatt
gatattcgattacgttcgattgatattcgattacgttcgattacgttcga
ttacgtttgattgatgttcgattacgttcgattgatgttcgatggggggt
cgattaaattagattccaatttacctcaattcctttcaatttcaagcgcc
tcttattagggaggttaagtatcgatatGATAGATAATCAACGCAAGGAA
CAAGCTTTGACAcacaacctgcagtaaacatgtgggcctgcatgatctgc
attttctagaatccaggctaaaaagATTCACATCATCTCGTTTAACTCTT
CAAATGTTGAACGAGAATCAACgttaatcaacagaatcaattagtcgaac
cagtcgaatgcataagccaaccgaacgtagtcgattgcgtttgattgcgt
tcaattgattcggcgttcgattcgttcgattgacatcatCTGGATATTGC
CAAACTAtatcaatcgaacaacttcaaacaaaaattgcaattgaaccaat
cgaacgcaatcaaaccaatcgattATAATGGGGCGTAATCGAACGTAATA
ATATCCAGGGCAAcgcaggggatgtcaatcgaacgtttGATTgccaatcg
aattaatcgaatttacttgaatccaatcgaatgattgattcTCGATTACC
CGAATTGATCGAACGCCAATCGAATTCTAATCGAAACCGAAAAACATGTG
AAATTCTATTggtttcgattgagttcgacaAGCTTCGATTAAgtttcgat
caacttcgattaacgttcaatcaacttcgattaacgttcgatcaaaTTCG
Aataacgttcgatcaacttcgattgactttcgatcaacttcgattaacgc
TCTATCAACttcgattttactttaaaaagtttaaattttgccGGGCTAAA
TTTAGAAATACCGTTCGTATCCTGTTTCAGCGCTAATTTTGAActtaaga
ttttatttttatttctagaGTGTCTTTAATTATTACTACTGAGATAGTTC
TGTGGGGTTGGTTCCCACGTAATACGCGAGCCGCACTCGATCACACGTAA
TACGCAAGCCACACTGAATCAACCCGGCGGTTGTTGGATGAAGGGCTTAT
TGGTGGAGGCGCTTATTTTGAAACTTGAGATTACGGTGCAGCTCTTATAT
TAAGGGAGGCGCTTAAAACAGGCCGGCGGTATAGAGGAAATACGGAACCA
CCAAAATCGAAATTACAAAAAACCGGAACAAAATTTGATCCAACATAAAT
GGAAtcaatcgaatgccaatcgaacatAAATTCAAttaatcgaatgccaa
tcgaacatAAATCCAATTAATCGAATGCCAATCAAACATAAATTGAATTG
ATCAAACATTAATCTAactaatcgaatcaatcgaaaagTATATGCAATCG
AAGCTAATCAAAACTAATCGAACGGTAATCGAATCTAATCAAAAAGAGTa
tgtgaaattcgattggcgttcgatcaattcggctaatcgaaaatcaatca
ttcgattggcttcgattgattcggtaatcaaatttttcgattgacatcct
cTGGTAAAATTGATAGTTGACTAAGTTCGATTGGattgattgattgtcaa
ttacatttaATTAATCTTCAATTTTGTTTAATTACGATTAtattcgatga
gtttgattccAATTAAATTAAATGCCGAATGCTTAAGTACCGTACGAAAT
CAAATGTCATTCAAGCAATTGAACGgaaaatcctgggtaatattagATTG
taattcgattgcgttcaacaatagaccttttttttaaagaggcagccatg
ttgaataattatgtactccagcataaaaacaatgatacagccatgcataa
ttactgtatcatgcatattttcaaaattatgcatggctgtatcattgttt
ttatgctggagtacataattattcaacatggctgcctctttaaaaaaagg
tctattgaattgcaattatttgattgtgttcaattgtgttcaattgatcC
AGAGTTCAATTCGTTTTCTTGACACCGTGTATTGTCCCCATACTTTTGAA
ACATACTCAAGTTATTTTGGTGAGGTAACCATTATGTTTGATCTCTNCGC
TTGACACCGTGTATTTTCCCCATACTTTTGAAACATATTGTCCATTATAT
ACATCCATTATGTTTGATCTCTTTTTTTCAgagtgaaaatcttgaaatcc
ACCATACAAAATATCCAAAAGAAAAGCCTGATCCTGAGAACTTACCCTTT
GCTAAAATCATGTCTGATCATATGTTGGTGATTGAATGGTTTAAAGGTTA
TGGTTGGAGTTCTCCTATTATCAAAACCCATGAGCCACTAATGTTGCACC
CTGGAGCAGGAGCTTTACAATATGGTAGTCAAGTAAGTTTTGTATTATAG
ATTGTTTGTAGTTTTTTTGTATTATTTGATGATAATAAGAATAGATATTG
TCATCTATAGCTGAAGGTTAGAGTTTCAATCTCCTTTTTGTAGGATTTGA
ACCCTTTTATTTCCTATATAAGTTGCGCGGTAATCTAAAAAACACTGGAT
TGGAAGTGACATTTATTGCcagaatttgaaaatgttaaacaggaaaaaga
aaaagaaagttaaaagAAGAAAGCTTATCTGTCATACGTAGTGCAAATCT
TAAAACATCACTGTGGCTTTCCTGGTATAGATTCCTCTTCATGTTTTATC
TGAAATATGGCGCAAATTTTAAGGCTACGCTCTTTCTTGCTTTGCAAGGA
TTAAAGATTCCCTTCTAGTCACtggctttaaactcaattgGTATAGAAGA
CCACCATTAAAATCCTATTTTAAAGATGGTGTAGCATGTAAATGGTTTTT
TAAGGCAAGGTATAGATTGGTAtaggtttttttttctgttcagTAATAAC
TGTTTTTCTTTCCTTAGATTTATGAAGGAATGAAAGCATATCATGGTGTT
GATGGTCAGATACGGATGTTTCGTCCAGAATGTAACATGGATAGGTTTTG
GAAATCAGCTCACAGGATGGCTTTACCAACGTTCAACCAAAAAGAATTGT
TACAGTGTATTCACGCACTCGTCAATTTGGAGAGAGACTGGGTTCCAAGA
CAAGAAGGGAAATCATTATACATTCGCCCAACTTTGATAGGTTTGGATGT
AAGTTTTTTTTCCGTTTGAACGccaaaaggttttgtttttgtttctttat
ttgAATCCAAGCTTCGATGATCAAactattaagaacaagttaagaacatt
taaagactttttgaaTGTTCTCAAAAAACATAGTGACATCCTATATTTCA
GCCTGCTTCagacattaatgatatcaaACGTGCCCTTTTGTTTGTAATCA
CCTCACCAAGCGGCCCTTACTTCCCTGGTGGTAAGATGCGACCTGTATCT
TTACTTGCGAACCCACAACATGTGCGATCATGGTATGGTGGTATTGGAGA
GGTCAAAGCTGGTGGGTATGTTACTAATTAGTTGCCAGATATTTTTTAAG
ATATTCCACTACAAATCGTATAAAATCGAAAAGTATTTTCAAGTGATTCT
TCTCACTTTTGTACATTTAAAGGAGCGCATTCTTTAATTTGTCATTAATA
AAGTCGATATGTTACTGTTAGAATTCTATTTATTGATAATACAGTCAAGT
GACCGGTCAAAAGTAGTCTTTTGCAAACTATATTATTTAAGTACATTTTT
AGAAACTATGGACCTACATTGTATTTACAAAGAGAAGCCATGAGTAAAGA
CTGTGATCAAGTGCTCTGGCTATATGAAGATCAGGTCAGATAcacgtttt
tcataagaacacttTTATAAGTACAATACCAGggtcaaaattatcaaaaa
taagaacaatttaagaccTGTGCTAGTCCTCCAAGTTGAAAGAACTGGGG
ataaagcctaaaatacctcaatttcaccCTTTtgataagaacaggataag
aacaatttgaggttcaaaatgtcaaaaaaatgaTAGCCTCGAAGCCTTGT
CAAAAATctactagttcttataaaaatagttATCATGTTTTTAATAACAA
AACACAGTCTAAACAAACTAATCTAATTACCTCCACCAACCAAGAAGTGA
AAGTAGTGATAACAATTTATAGAAACTAATAATACTACCTTCTCAAAATA
GATACAGTAAAAGCTTTATGCATGTTTCAAACTAATCAAAATCTTGATAA
TAATGTCATgcagaaaacaaaaatttaaaaatggttttgtattattttcc
ttttcctttaTTAGGTAACAGAAGCAGGAGGCATGAACATTTTCGTTCAT
TGGATTAATGACAATGGAGGTGTGTGGTTTTAGACTATAGAATCAAAACT
AAGATCATTCATTCTCTGAATAGCAATAGCCGAGCGGTCAAGGTGCCATC
AATCAAAATTAGGGGCTCTCctcgctccttccaatgtttcgTTCTGTTCA
TAGAAAACGGAACCCGTGTGATCCGTGGACCCTgtaaaaacaattgaaag
attgtctaaaagtcctaaatTTCTGGGTTATCCACGTTAAACATCGACTC
TGCCTATCTACCCTGATTCGCacattagtgaggttaagtaaatcggtaaa
atcacgacgacgaacgaaaatttaacaggctagtgagtttcaaccaatca
aatttcgtattttcattaGCCttatacatttttcgtccgtcgtcgtgatt
atccctGTATGCTAAACCTCAGTATTATCGGGGATTCTGGATGTGCACGC
ATCAGGCTACTCTAGAAGCGTAGAAAACAGATTAGACAAGGGTCTATATA
GTGATTTTAATCCATCACGGTGATTACAAGCCATACGAATTGGTTTCACG
AAAAGAAAATTACGTATCATTTTCATACATgatgaattttgaatgaaatt
gaATCGAATGATGAAACAAACAAATCAAACAtacaaagaaaatgatttta
taAAACACTGGCGTGCATTTAATACCGGTATTAACAATAAATTCTGCACC
AAAATATCATTCGTTGAAAAAGTACCGCATCATATATAAAAAGAATCCCT
GTTGACACCCATCAACAACCAGAACTTTGCGTTACCTGTATTACAGGAGA
GCATTCTTCTTAGAACTAATTGGTTGAAGATATtatattttgtatcattt
ctaTTTTTAGACGAAGAATTACTAACGGCACCATTGAACTCGTTGATTTT
GCCAGGAATCACCCGCCAATCATGCATAGAGATTGCTAAAGAATGGgtaa
aattacattttatcttctgttttaaattttctagAGCTTGACATGTAGAT
TATGGAAGAAGCTGAAGTCtctaatgttttgattttcaaaaagattttca
ctTACAGGTTCTGTACAGGGGTCTGATTAACTTATATATTTTAGGTGACC
AGAAATGAGGCGTTTTCGTACCCTACATGGGTAAGCTTTAAGTTAAGACG
GCCGACCTTCTACCCTGCCAACTTAGAAAGAAAGTTTGCAAATAaattct
ttgcttgaaaaagattgaacgaagtcattgcattgatgtCAAAAAagatg
cattgactttagacagccaattTTTTTGCCCACTTAAATTCATAATTTGA
ATAGGCAGCGCGAAAAATAGACCGTTTTAGAGCTAATTGAGTGAAATTCT
TTTATCAGTAATTTAGTACTATAGTTCTGTCGAtagcaatagaccttttc
ataaattacgtcacgttCTTCACTTGCCTTGTATTCAAAAAATTACCATG
gtgtaataaaatccgctgggagttaatcaccaatAATTGGCAATAATTTC
CAAACGAGGCGAGTGATGTTCGTagcgtaatttatgaaaaggtctattga
tgaTAAAATTCtagaattcattttttttaggGAAATGTTCTTGTTACGGA
AAAAGAATTCACAATTCAAGAAGTCGTCAAAGCCAGTCATCAAAACAGgg
ttaaaaacttttattgTTAAACTCTGAAAATAATAACTATTTTGATTCAA
ACAAAACAGGCAAAAGATTGTGTAAACCAAGAAATTAAAGCGTAAaacac
atttttcttttaaccatatttcgATCTTTATAGATCTTTATGTAATTACT
TATGTACTTATGTATATACCCAAAACATTTTATTACCCAGagcattttaa
aaattattccaAAATTTCAGTGGACCACTTTGACTTTGTTCGCACGTGAT
Ggtaagccattctattggttgcattcaagtgttacgtcacttctaaccaa
tagaatgacttCATTCTGTTTGGGAGCAAAACGGAACTATCACGTGCGAA
CGTGGTCTTAAGTGAGGAATTTAGGACCGAATGAGACGCGAACTCATCTC
ATAGTACTTATAGTAAATTTAATCATTATGCTAGAAACtcattcgaaaaa
aataatttggacTGTTTTACTCTAGTAAATTAAATAAAGGTATCctaact
tttcatcttcagaTCAAGCACATTTTTGCTTGTGGTACAGCAGCTGTGAT
ATGTCCAGTCAATCGATTGGTGTACGAACCCCTTGATGGATCCAAAGAGG
TTGGTTTAATGAATTATATACTTCGTTTAAAAGCTTCTTTTACATGCGAG
GCCGTAAACTTTTGAATTgagatgaaaaaatattttgcatttcTGATAAT
TGACTGAGGTATATTTTTCCAATGCCGATTGAGATCTTGTTAAGTGTTTG
AATTGTTTGAATATTCTTTTTGGCAACTATAATTGCTCTTTTCCTAGATA
TCCAGAAAAATATTGAGGTTGGAATATCGGACATTTACGgctttttttca
aactgaaaaaaagtATCTACATCACCACTGACTGTGAATAGTTCAATTTA
TACTGAGAaggaaaaatcgtctgagacgagtagtttgtaaaatgtgatct
gtggaggagatcctatttattgaaacatgaatggaaagtacacataatgt
tcattttctaaattgctcgtctcagacaaattagtcgtctcagtataaat
ataACTAATGCGCAGAGAGATAAAATAGCGATGATATTATTTGAATCATC
TCCTCCTTATTCTACCGTCATataattaaattaattaaattaaattaccA
TACATAGGTGGTTTTAGACCATCTTCCTCTGATTGAAGAAAGTTTTTGGT
CCCTTGAGGGTCAACTTGGAGTGGGTCAACTGTACtttgaaaaattcata
aatttctttACATCCTGAGTTAGCGATCTACACTGATAGCGAAGTACAAG
GAGCACCATCCCTGTACTTCGCTATCAGTGTAGATCGCTAACCCAGTACA
GTACAGTTGACTCAACCCTACtatagaaaaaaattgcaagtgctttaaaa
aagaaatactctacttacaattttgcctagaAATGATAACCTTTGCTATT
AAATACTTTAATAATTCCATATAGAACAAAAGCAATGGTTTTGCATAAAT
GTAGTTTTAAATATAACCCTTTTTTTCAATAAGGATATTTATGTTAACTA
TATCGCAACAAGGTCATATTTATCATCCATCTCTGAGAAGGAACTTGTTT
CGTGTAATTTCAACGTATCATTTTGTTTCCCTAACAGTCTATCCAAAATT
GCTTTTGGATGAGTATTTTCTCTCAGTGTACGTCGACTTCTCATGAACTT
TAAAACATCATAAAACAAACCCAGGGAAACTAAAACACCTACCATACCAA
CAAACACCTTTACAGAGATGTTATTTTCGAATAGCTCTCCAACCGTTCCG
ATATAGATGGTCTCCATATGACAATGTCTTTCATACTTCGTCTGCATGTA
ATCATAAATCTCCTCTCGATTCTTATGCATGCATCTGAGCACTTTGATTA
ACTCTTGACTAGGCTTACTGCTCATGGTACATCGAATGAAAAGCTGTGCT
GGTAATGTTTGAACAATATGTAAAGGTGGACTTTGACCATCGTGACCGTG
GATCTCCTCTTGGTACCACGCAGCAATATCAGCGCTGATCATCGCTCCAA
ACACTTTCTCTTCTCGCACTAAGTTCAATACTTCTTCGTAAGAGGGTGCG
GGAACTATTTTGGCGGAATAATCTTTCGCCGCCACTTCTGCTTCGTACGA
ATCCTGTAAAATCATATTCGTGATATTCAcccaccttttcgaccgtagtc
acgCAGTCCAGGCGCGtgtcacttaattatttaattaaaaTCCTAAACTC
CCTAATCTCgattcaatccttttttgacacctttttctattgtctatagg
tgcgaaaaaaagactgggaagATTTTAGGGTCGTAAAAGGGACAAAAAat
tgcccgcgcggcaattgccggctacggtcgaaaaggtgtatgtattaatg
atgtaatgtttCGTATGGAAGCATCCCAAAAAGACCAggtgtttgccact
aattttaaatttaaacaataaaactgATGGCAAACACCCAGGCTATATTT
taggtgcttccgtataaacaTTACGTCGTGAAGGTCACCAACTAGCAATG
TAACACTTGGTTGATTTGACCTGACCTGATGCCGCAGGGCTTTTAGTTCC
ATATTTCTTAGTTAGCGATATTAAGTTGGGAGGCGGATCAAAGATAAAAT
TAGGAGGAAGATAGtctttttccccttttttcctTTTCCGTTGGGGGTGT
GTAGCTACAAGAAGAGGAGCCTTCAGCTCACCCGATGTGGTCGTAAACTA
AGATATCAAAGAACTGACTAAGAATGAGGATTGGGAGAGCAGAGGCTTTT
TAACTAGTATCGATAATTCTTTCATGGCGATTCAGGCctcaattcaaata
tttttaattagGCTCTAAGTGTTACTTTATTACCTGTAAAACAGCCATAG
ATTGTCCGTAAACACCAAGGCTTTCAACACCGGACACCGCATCTGTCATT
GTGGCCGTGATCACACAAACCAATAATATTCCTACTATCAACCAAAATAA
CGCTATAAAGCGGCCGAGTGGTGATTTGGGTGTGACGTCACCATAACCAA
CGGTTGTCATAGAAACTACACTCCACCAGAATGTTGAACAAATACCTAAG
TGAAAAAATTGGGAATATTAGCCAAGATATTTGAGTTTAAAGACTCAGCT
AAAAAAATATCGTAGAATAAGAAAGATCATTGATCTTATAAACCCGAATG
TCTCTCCTATAAATCATACTTTTTTCAGTAAGTGCGTTTCAATGCCCATC
TTTCAAGCcttatttgaaaatatgaatCTGAATTTTGCTGATTAGATTAT
GACGTTACCAGGAAATGACAGATTTTCCTCAATCGCAACCAAATTTCAGC
TTCATATGATTTAtttcaaggttttgagaattttcttcCAAGCTGTATAA
AGACGGAATTCTGCACGAatcaaaaatcatatttttagtGTAGGCGAAAG
AACTACCATCTTTTGGCACAGGGTTCCACTGCCACTTTTCTAGcagaaaa
agaccaggactctGGATATAGTGAAAAAATGAGCTTCGGAAAAATAAGCC
AtacatttagaaaaaaaaaacctttccaaaATCATGCCGATAATCCCGGA
AATCTGGAAATTTTCTGGAAAGTTAAATGGATCTTAGTCTGCCAAATACA
ATGTTATGGTAAGCGACGATAAGTTCCTAAGCCTAATTAATAAAATAATA
CCAACCTAAAACAAACGATCGTTCAACATTCTCATTCCAAATCCGTTCAA
CGAACCAGATGAGAATACTGAAAAAGATGGCCATAGGAATCACaatgaca
aaaataattttagtactaGCTATTCCTCGTAAGATTTTATGTGGCAAATC
GATCATTTTACGTGGGAGGATGAccaccattttgtttgttttcattaGGG
AGAAGGATCGAAGTGTGTTTTCATTCTCCCATTCATCACCCATCTCTTGC
ATCTGTGGCGAAAGAAAGATTTCACCTTCTTTGATCCCTGTCAGATAATC
TTTGCCGTATGGGAACCCCTTCTTAATGTTTTGAATAAAGTCTTTCCTAG
ATTCGAATTTCTTCACAAAATCGATTATAGTGACGTTTGGGTTTGGATTA
CAAAAGGAGTTAGCTCTTGTGAATATCTTCGGAATGATTCCATCGATTTC
GCCACGGTCGTTTGTGAACATGTATGGTTTGACTTCCCAGAATACACCTT
TCATCAGTGATGATTTGGTGGTCGTAAGGTTTTCAGCTAGCGAAAGTGTG
GTGGTCTTAGCGTTTTCAGCTAGTAATTGTGTGGCGCTCGTAGTGTTTTC
AGCTTTTGATGACGTGGTGGTGTTCATAGTGTTTTCGGCTTGTGATGACG
TGGTGGTCGTAGCGCTTTCAACCAGTAATGGTGTGGTGGTCGTAGCGTTT
TCTGCTAGTAATGGTGTCGTGGTCGTAGCGTTTTCAGCTAGTGAAGGTGT
GGTGGTTGTAGCGTTTTCTGCTTGTGATGGCGTGGTGGTCGTAGCGTTTT
CTGCTAGTGAAGGTGTGGTGGTTGTAGCGTTTTCTGCTTGTGATGGCGTG
GTGGTCGTAGCGCTTacagcttgttttgattttaaaatcaaaagttgtaa
caaaattGATAATAGCTTCATTATGATGGATTATCAAGTCAGTATCAAAA
CTTATACAAGCCTCACTCATAATAACCTGATTTCCAAATTGAATTAGTCA
AGAAATTTTATGATCATAAACTTGTATAGAGTTTATGTTTGGGAGgttga
ttttatattttatcaAGTTAAGCCAATTTATTATTGATAACTTCCAAACA
AGTCTGTCAGTCTTTTAGTAGCGGGTGATCGACtttgaattagaaaaaac
tacGGAAAGTTTGTTTGAAAGGATAAGGTGACACTGTGAGCTAAGTTCAA
ATTTGTTGTAAAGTAACTTGTTAATATTGATTAGAAAAATGATGAGGAAA
ATATacaaatcgaaaatttttctttacCTCCAAAGAGAAAGAAATGTTAG
CCTGCTATTTTTAAACTGGTTTCTATTTCCCCATACCGATGTgtgttttt
aaaagaataaacCTTTTTCtcagaacatccaacatttttgggGCCTTCGg
atattttaacgttttcagTACGAACCCTAAATATaatcctaaaaatgttt
ttattttcaccatcttgtgagtatttttgtagtattttcctaaaaaattg
gaaacttgttcttgatatttagctatcgaagccttatgttatcATATTGT
TCTAACAATGCTGAAAATTCCTATTCTcttaaatggagaaaaaaagtttt
attgagtttcattttttatttttccaggagTTAACGATTCCGTACGATAT
GACAGATGATTCGTTGATGATGAAACTTTACAATGAACTTTTCAGTATAC
AGGTATGTTCGCATTGACATTCAGAAATTCTAAAactattctttcttttt
tacagTACAAAGAAAAACTGTTGACAAAACCCGCTAAATGTGTTGGGGCG
TTTCCTGGAGGTTCCGTAATgaatactttaagggcagaaactttcacaat
ttttcacgatttttgccctttttcgcgaaagtttctgccaagtaaaaaat
tgcattaattaaatttgcgaaagttttttcgtttttttgctatttcatac
ataatcaccatggtaattgtttcaatacgaggcaagtgatgttcgtgacg
taatttatgaaaaggtctactctattgtttaaaagtcctagattactgag
CTATCCGCGTAAAATGTCGAACTCGTCACGATGTCAAAATGAGCAATTAA
CTCTATGTACCGGAGGTGGGTACAAGGGTTGGCAAATGAGGAGTGAGGGG
GGTTTTACGAACCATAGAGGGActactttaaatttttctgatttttgtaa
cccttagaaagactttgTAAGGTTAAAAAACCGAACCCTTATTGTCAGCA
CATACCCAGTACCTCCTCCTCCCTTCACCAGGCTCTATGACTTCATGCTG
GTTAATTTGACGAGAAAGAGATTACTTTCCTTTTTCTTCCTCTTCATTTT
CCGTTCAGTTTATCAATACCCAAGTCGGCTGGCCGTGGCTCCGTACAAAC
TAACGAATAAGTCTCAGAATTTTGGGTTATCAACATAAAATCTAAACTCA
TCTCGATACCAAATTGAGTAAATTTCTGCCTTCATGTCGGTTAATTTGAC
GGGACAGAGATCCTGTATTTCTCTGAAaacccaattcaaaattttctttt
catttttgtagtTTGGTAAGAAGCCACACCCTTGGGTTTACAATGTGAAC
TAAAAGTAAACACGTCTTGATACCAAAACGAGAGAAAGTCTCCTGGTGTT
ATGGTAATACAAACGAAAAAACTTTGGTACAtattttttaactgtttttt
ggTAGTTCCCAGAAAGCTGATTGttgtattttgtcattttttgtagtaat
tttaatttaaggatttgcttatcaaattttcaacattttattttgaagtc
ttttgtacttttttttatcatccAGTCATCCATTCCTCTTCATTGAGAAG
AGCCCAATTTTGTAGTGGGTATTTCCAACACATTCTCGCActtattttac
caaaaaatacctaaaatatgtcatttcgttctttgatagttagggttagg
gtttgtcgttctttttgtcgctttttaatagttatttatcgttcttttta
gattgtCTGGATAGTATTTACCGTAATTACCGATTGTAGATTTATGgatt
tttacatatctacacatatggtagatttaaggatgtttacatatctacac
atatggtggAAATAAGTGCGAGATAGGCCTGGTATTATCTATGGTTATTT
AATTGCCATCATTTAAGGGGAAAGCTTATATCAAATTTATTAGATTTAAC
TAAAGTATATTTTAAAGTATTTATATGGATTTATTTAGAGATTAATGATT
TATGTGTTAAAAGATTCATCTAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034853XLOC_034853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055318-exon-scaffold_253-1491911889:125546..125888TCONS_00055318-exon-scaffold_253-1491911889:125546..125888Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:125546..125888TCONS_00055318-exon-scaffold_253-1510915933:125546..125888Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:125546..125888TCONS_00055318-exon-scaffold_253-1575043694:125546..125888Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:129027..129227TCONS_00055318-exon-scaffold_253-1491911889:129027..129227Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:129027..129227TCONS_00055318-exon-scaffold_253-1510915933:129027..129227Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:129027..129227TCONS_00055318-exon-scaffold_253-1575043694:129027..129227Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:129763..129993TCONS_00055318-exon-scaffold_253-1491911889:129763..129993Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:129763..129993TCONS_00055318-exon-scaffold_253-1510915933:129763..129993Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:129763..129993TCONS_00055318-exon-scaffold_253-1575043694:129763..129993Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:130147..130310TCONS_00055318-exon-scaffold_253-1491911889:130147..130310Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:130147..130310TCONS_00055318-exon-scaffold_253-1510915933:130147..130310Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:130147..130310TCONS_00055318-exon-scaffold_253-1575043694:130147..130310Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:130548..130629TCONS_00055318-exon-scaffold_253-1491911889:130548..130629Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:130548..130629TCONS_00055318-exon-scaffold_253-1510915933:130548..130629Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:130548..130629TCONS_00055318-exon-scaffold_253-1575043694:130548..130629Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:131110..131164TCONS_00055318-exon-scaffold_253-1491911889:131110..131164Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:131110..131164TCONS_00055318-exon-scaffold_253-1510915933:131110..131164Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:131110..131164TCONS_00055318-exon-scaffold_253-1575043694:131110..131164Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:132006..132091TCONS_00055318-exon-scaffold_253-1491911889:132006..132091Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:132006..132091TCONS_00055318-exon-scaffold_253-1510915933:132006..132091Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:132006..132091TCONS_00055318-exon-scaffold_253-1575043694:132006..132091Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:132726..132794TCONS_00055318-exon-scaffold_253-1491911889:132726..132794Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:132726..132794TCONS_00055318-exon-scaffold_253-1510915933:132726..132794Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:132726..132794TCONS_00055318-exon-scaffold_253-1575043694:132726..132794Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:133308..133394TCONS_00055318-exon-scaffold_253-1491911889:133308..133394Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:133308..133394TCONS_00055318-exon-scaffold_253-1510915933:133308..133394Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:133308..133394TCONS_00055318-exon-scaffold_253-1575043694:133308..133394Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:138123..138197TCONS_00055318-exon-scaffold_253-1491911889:138123..138197Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:138123..138197TCONS_00055318-exon-scaffold_253-1510915933:138123..138197Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:138123..138197TCONS_00055318-exon-scaffold_253-1575043694:138123..138197Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:139057..139148TCONS_00055318-exon-scaffold_253-1491911889:139057..139148Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:139057..139148TCONS_00055318-exon-scaffold_253-1510915933:139057..139148Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:139057..139148TCONS_00055318-exon-scaffold_253-1575043694:139057..139148Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:139497..139550TCONS_00055318-exon-scaffold_253-1491911889:139497..139550Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:139497..139550TCONS_00055318-exon-scaffold_253-1510915933:139497..139550Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:139497..139550TCONS_00055318-exon-scaffold_253-1575043694:139497..139550Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1491911889:139586..139773TCONS_00055318-exon-scaffold_253-1491911889:139586..139773Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1510915933:139586..139773TCONS_00055318-exon-scaffold_253-1510915933:139586..139773Clytia hemisphaericaexon
TCONS_00055318-exon-scaffold_253-1575043694:139586..139773TCONS_00055318-exon-scaffold_253-1575043694:139586..139773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:125546..139773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0672197	1.59756	9.23962e-08	1.20435	4.23006	0.00124478	2.00302	3.82477	0.528637	0.696028	7.86128	5.23053	0.0290777	9.22151	0.064209	0.0936899	0.180002	0.00126532	9.73981e-05	0.237563	4.78021e-07	0.0164752	8.10218e-05	0.91724	1.28364	1.88953	0.765302	0.00759256	0.551633	0.0152874
Blast
[Close]
BLAST of TCONS_00055318 vs. Swiss-Prot (Human)
Match: BCAT1 (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3)

HSP 1 Score: 359.377 bits (921), Expect = 3.177e-118
Identity = 166/372 (44.62%), Postives = 242/372 (65.05%), Query Frame = 2 
Query:  311 AASYEEFNDIKSENLEIHHTKYPKEKPDPENLPFAKIMSDHMLVIEWFKGYGWSSPIIKTHEPLMLHPGAGALQYGSQIYEGMKAYHGVDGQIRMFRPECNMDRFWKSAHRMALPTFNQKELLQCIHALVNLERDWVPRQEGKSLYIRPTLIGLDPASDINDIKRALLFVITSPSGPYFPGGKMRPVSLLANPQHVRSWYGGIGEVKAGGNYGPTLYLQREAMSKDCDQVLWLY--EDQVTEAGGMNIFVHWINDNGDEELLTAPLNSLILPGITRQSCIEIAKEWGNVLVTEKEFTIQEVVKASHQNRIKHIFACGTAAVICPVNRLVYEPLDGSKEELTIPYDMTDDSLMMKLYNELFSIQFGKKPHPWV 1420
              S E     K+++L +      KEKPDP NL F  + +DHML +EW   +GW  P IK  + L LHPG+ AL Y  +++EG+KA+ GVD +IR+F+P  NMDR ++SA R  LP F+++ELL+CI  LV L+++WVP     SLYIRPT IG +P+  +    +ALLFV+ SP GPYF  G   PVSL ANP++VR+W GG G+ K GGNYG +L+ Q EA+   C QVLWLY  + Q+TE G MN+F++WIN++G+EEL T PL+ +ILPG+TR+  +++A +WG   V+E+  T+ ++  A   NR++ +F  GTA V+CPV+ ++Y+      E + IP       L  ++ ++L  IQ+G++   W 
Sbjct:   16 GGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYK-----GETIHIPTMENGPKLASRILSKLTDIQYGREESDWT 382
The following BLAST results are available for this feature:
BLAST of TCONS_00055318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BCAT13.177e-11844.62Branched-chain-amino-acid aminotransferase, cytoso... [more]
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