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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055319 ID=TCONS_00055319|Name=TCONS_00055319|organism=Clytia hemisphaerica|type=transcript|length=1750bpRun BLAST on NCBI protein sequence of TCONS_00055319-protein >TCONS_00055319-protein ID=TCONS_00055319-protein|Name=TCONS_00055319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp MLRLQAYRNFSKQIRRFVQPAASYEEFNDIKSENLEIHHTKYPKEKPDPERun BLAST on NCBI transcript from alignment at scaffold_253:125546..139773+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055319 ID=TCONS_00055319|Name=TCONS_00055319|organism=Clytia hemisphaerica|type=transcript|length=14228bp|location=Sequence derived from alignment at scaffold_253:125546..139773+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:125546..139773+ >TCONS_00055319 ID=TCONS_00055319|Name=TCONS_00055319|organism=Clytia hemisphaerica|type=CDS|length=13035bp|location=Sequence derived from alignment at scaffold_253:125546..139773+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055319 vs. Swiss-Prot (Human)
Match: BCAT1 (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3) HSP 1 Score: 359.377 bits (921), Expect = 4.034e-118 Identity = 166/372 (44.62%), Postives = 242/372 (65.05%), Query Frame = 2
Query: 311 AASYEEFNDIKSENLEIHHTKYPKEKPDPENLPFAKIMSDHMLVIEWFKGYGWSSPIIKTHEPLMLHPGAGALQYGSQIYEGMKAYHGVDGQIRMFRPECNMDRFWKSAHRMALPTFNQKELLQCIHALVNLERDWVPRQEGKSLYIRPTLIGLDPASDINDIKRALLFVITSPSGPYFPGGKMRPVSLLANPQHVRSWYGGIGEVKAGGNYGPTLYLQREAMSKDCDQVLWLY--EDQVTEAGGMNIFVHWINDNGDEELLTAPLNSLILPGITRQSCIEIAKEWGNVLVTEKEFTIQEVVKASHQNRIKHIFACGTAAVICPVNRLVYEPLDGSKEELTIPYDMTDDSLMMKLYNELFSIQFGKKPHPWV 1420
S E K+++L + KEKPDP NL F + +DHML +EW +GW P IK + L LHPG+ AL Y +++EG+KA+ GVD +IR+F+P NMDR ++SA R LP F+++ELL+CI LV L+++WVP SLYIRPT IG +P+ + +ALLFV+ SP GPYF G PVSL ANP++VR+W GG G+ K GGNYG +L+ Q EA+ C QVLWLY + Q+TE G MN+F++WIN++G+EEL T PL+ +ILPG+TR+ +++A +WG V+E+ T+ ++ A NR++ +F GTA V+CPV+ ++Y+ E + IP L ++ ++L IQ+G++ W
Sbjct: 16 GGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYK-----GETIHIPTMENGPKLASRILSKLTDIQYGREESDWT 382 The following BLAST results are available for this feature:
BLAST of TCONS_00055319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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