TCONS_00055321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055321
Unique NameTCONS_00055321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055321 ID=TCONS_00055321|Name=TCONS_00055321|organism=Clytia hemisphaerica|type=transcript|length=1804bp
CGGGAATCCTCTCAAGCGACAAAAACAAGACAAAACCACCAGAAACACTC
ATAGTCTCATATACTATACTATACCTACCATTTGACCATACCAGTACTGA
CTCATACACATCATACGCAACACAACAACTACAGCCAACAGCTTTACTAC
ACAGAACGATCTGGTCCAACAGCTATAACAAAGAAAAGCCTGCTTGCTAG
ATTAAAGGACTTTTATATGCTAGTCTGTTAAAACAGAACTTTATCATGTT
ACGTCTGCAAGCATATCGCAACTTTTCCAAACAAATAAGAAGATTTGTCC
AGCCAGCAGCCTCTTATGAAGAATTCAATGATATTAAGagtgaaaatctt
gaaatccACCATACAAAATATCCAAAAGAAAAGCCTGATCCTGAGAACTT
ACCCTTTGCTAAAATCATGTCTGATCATATGTTGGTGATTGAATGGTTTA
AAGGTTATGGTTGGAGTTCTCCTATTATCAAAACCCATGAGCCACTAATG
TTGCACCCTGGAGCAGGAGCTTTACAATATGGTAGTCAAATTTATGAAGG
AATGAAAGCATATCATGGTGTTGATGGTCAGATACGGATGTTTCGTCCAG
AATGTAACATGGATAGGTTTTGGAAATCAGCTCACAGGATGGCTTTACCA
ACGTTCAACCAAAAAGAATTGTTACAGTGTATTCACGCACTCGTCAATTT
GGAGAGAGACTGGGTTCCAAGACAAGAAGGGAAATCATTATACATTCGCC
CAACTTTGATAGGTTTGGATCCTGCTTCagacattaatgatatcaaACGT
GCCCTTTTGTTTGTAATCACCTCACCAAGCGGCCCTTACTTCCCTGGTGG
TAAGATGCGACCTGTATCTTTACTTGCGAACCCACAACATGTGCGATCAT
GGTATGGTGGTATTGGAGAGGTCAAAGCTGAAACTATGGACCTACATTGT
ATTTACAAAGAGAAGCCATGAGTAAAGACTGTGATCAAGTGCTCTGGCTA
TATGAAGATCAGGTAACAGAAGCAGGAGGCATGAACATTTTCGTTCATTG
GATTAATGACAATGGAGACGAAGAATTACTAACGGCACCATTGAACTCGT
TGATTTTGCCAGGAATCACCCGCCAATCATGCATAGAGATTGCTAAAGAA
TGGgGAAATGTTCTTGTTACGGAAAAAGAATTCACAATTCAAGAAGTCGT
CAAAGCCAGTCATCAAAACAGgaTCAAGCACATTTTTGCTTGTGGTACAG
CAGCTGTGATATGTCCAGTCAATCGATTGGTGTACGAACCCCTTGATGGA
TCCAAAGAGgagTTAACGATTCCGTACGATATGACAGATGATTCGTTGAT
GATGAAACTTTACAATGAACTTTTCAGTATACAGtTTGGTAAGAAGCCAC
ACCCTTGGGTTTACAATGTGAACTAAAAGTAAACACGTCTTGATACCAAA
ACGAGAGAAAGTCTCCTGGTGTTATGGTAATACAAACGAAAAAACTTTGG
TACAtattttttaactgttttttggTAGTTCCCAGAAAGCTGATTGttgt
attttgtcattttttgtagtaattttaatttaaggatttgcttatcaaat
tttcaacattttattttgaagtcttttgtacttttttttatcatccAGTC
ATCCATTCCTCTTCATTGAGAAGAGCCCAATTTTGTAGTGGGTATTTCCA
ACACATTCTCGCActtattttaccaaaaaatacctaaaatatgtcatttc
gttctttgatagttagggttagggtttgtcgttctttttgtcgcttttta
atag
Run BLAST on NCBI

transcript from alignment at scaffold_253:125551..139476+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055321 ID=TCONS_00055321|Name=TCONS_00055321|organism=Clytia hemisphaerica|type=transcript|length=13926bp|location=Sequence derived from alignment at scaffold_253:125551..139476+ (Clytia hemisphaerica)
CGGGAATCCTCTCAAGCGACAAAAACAAGACAAAACCACCAGAAACACTC
ATAGTCTCATATACTATACTATACCTACCATTTGACCATACCAGTACTGA
CTCATACACATCATACGCAACACAACAACTACAGCCAACAGCTTTACTAC
ACAGAACGATCTGGTCCAACAGCTATAACAAAGAAAAGCCTGCTTGCTAG
ATTAAAGGACTTTTATATGCTAGTCTGTTAAAACAGAACTTTATCATGTT
ACGTCTGCAAGCATATCGCAACTTTTCCAAACAAATAAGAAGATTTGTCC
AGCCAGCAGCCTCTTATGAAGAATTCAATGATATTAAGGTACCAAGAAAT
TAAATTCAAGTTTAAATTATGCAGCTTTTTTTTACTAAATAGCTACACAC
ACTTAAACTTTTTAAACCATCTCAACCCACTCAGCACTCTCAAGATTTGT
TTAATCCATATtgccagacgatgtcaatcgaacggaatagaccttttttc
aaagaggatgtcctgttgaataattatgtagtccagccataaaaacaatg
atagagccatgcataattactgtatcatgNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcata
ttgtaataattatgcatggttttatcattgtttttctgctggactacata
attattcaacagggtggcctctttgaaaaaaggtctatcgaacgaaaatt
ccaatcgaatGAATCAAAcgcaatacacctttcccgtgattcgtaaaact
aatgcgcgcgcattattttgatgctctccaccgtttggtctctggaggta
gacaaacccgtttttgcctgcgttcccttagggaaagttggttttttgag
cttttcttaagttctgtcgaacaaaattccctcaaattttagtatgttca
atctattcatgatattataccaccctgaaaatattttgccaaaagaagat
tgctgtcaaaagttagaggctAAAATTCCACTTTCCCTagcccctcgcag
gcaaaaacgcattttttacctcccaaacaattttatacacaacagtGGAG
CGCACATtctcccgggccatttctgagaactttgaattacgggaaaggtg
tatcgaacgcaatcaaatgattgcgattcgattgccgaacgcaatcgaat
atcaatcgaacgtaaaattctgggtaaaattcgattgattcgattgatat
tcgattacgttcgattgatattcgattacgttcgattacgttcgattacg
tttgattgatgttcgattacgttcgattgatgttcgatggggggtcgatt
aaattagattccaatttacctcaattcctttcaatttcaagcgcctctta
ttagggaggttaagtatcgatatGATAGATAATCAACGCAAGGAACAAGC
TTTGACAcacaacctgcagtaaacatgtgggcctgcatgatctgcatttt
ctagaatccaggctaaaaagATTCACATCATCTCGTTTAACTCTTCAAAT
GTTGAACGAGAATCAACgttaatcaacagaatcaattagtcgaaccagtc
gaatgcataagccaaccgaacgtagtcgattgcgtttgattgcgttcaat
tgattcggcgttcgattcgttcgattgacatcatCTGGATATTGCCAAAC
TAtatcaatcgaacaacttcaaacaaaaattgcaattgaaccaatcgaac
gcaatcaaaccaatcgattATAATGGGGCGTAATCGAACGTAATAATATC
CAGGGCAAcgcaggggatgtcaatcgaacgtttGATTgccaatcgaatta
atcgaatttacttgaatccaatcgaatgattgattcTCGATTACCCGAAT
TGATCGAACGCCAATCGAATTCTAATCGAAACCGAAAAACATGTGAAATT
CTATTggtttcgattgagttcgacaAGCTTCGATTAAgtttcgatcaact
tcgattaacgttcaatcaacttcgattaacgttcgatcaaaTTCGAataa
cgttcgatcaacttcgattgactttcgatcaacttcgattaacgcTCTAT
CAACttcgattttactttaaaaagtttaaattttgccGGGCTAAATTTAG
AAATACCGTTCGTATCCTGTTTCAGCGCTAATTTTGAActtaagatttta
tttttatttctagaGTGTCTTTAATTATTACTACTGAGATAGTTCTGTGG
GGTTGGTTCCCACGTAATACGCGAGCCGCACTCGATCACACGTAATACGC
AAGCCACACTGAATCAACCCGGCGGTTGTTGGATGAAGGGCTTATTGGTG
GAGGCGCTTATTTTGAAACTTGAGATTACGGTGCAGCTCTTATATTAAGG
GAGGCGCTTAAAACAGGCCGGCGGTATAGAGGAAATACGGAACCACCAAA
ATCGAAATTACAAAAAACCGGAACAAAATTTGATCCAACATAAATGGAAt
caatcgaatgccaatcgaacatAAATTCAAttaatcgaatgccaatcgaa
catAAATCCAATTAATCGAATGCCAATCAAACATAAATTGAATTGATCAA
ACATTAATCTAactaatcgaatcaatcgaaaagTATATGCAATCGAAGCT
AATCAAAACTAATCGAACGGTAATCGAATCTAATCAAAAAGAGTatgtga
aattcgattggcgttcgatcaattcggctaatcgaaaatcaatcattcga
ttggcttcgattgattcggtaatcaaatttttcgattgacatcctcTGGT
AAAATTGATAGTTGACTAAGTTCGATTGGattgattgattgtcaattaca
tttaATTAATCTTCAATTTTGTTTAATTACGATTAtattcgatgagtttg
attccAATTAAATTAAATGCCGAATGCTTAAGTACCGTACGAAATCAAAT
GTCATTCAAGCAATTGAACGgaaaatcctgggtaatattagATTGtaatt
cgattgcgttcaacaatagaccttttttttaaagaggcagccatgttgaa
taattatgtactccagcataaaaacaatgatacagccatgcataattact
gtatcatgcatattttcaaaattatgcatggctgtatcattgtttttatg
ctggagtacataattattcaacatggctgcctctttaaaaaaaggtctat
tgaattgcaattatttgattgtgttcaattgtgttcaattgatcCAGAGT
TCAATTCGTTTTCTTGACACCGTGTATTGTCCCCATACTTTTGAAACATA
CTCAAGTTATTTTGGTGAGGTAACCATTATGTTTGATCTCTNCGCTTGAC
ACCGTGTATTTTCCCCATACTTTTGAAACATATTGTCCATTATATACATC
CATTATGTTTGATCTCTTTTTTTCAgagtgaaaatcttgaaatccACCAT
ACAAAATATCCAAAAGAAAAGCCTGATCCTGAGAACTTACCCTTTGCTAA
AATCATGTCTGATCATATGTTGGTGATTGAATGGTTTAAAGGTTATGGTT
GGAGTTCTCCTATTATCAAAACCCATGAGCCACTAATGTTGCACCCTGGA
GCAGGAGCTTTACAATATGGTAGTCAAGTAAGTTTTGTATTATAGATTGT
TTGTAGTTTTTTTGTATTATTTGATGATAATAAGAATAGATATTGTCATC
TATAGCTGAAGGTTAGAGTTTCAATCTCCTTTTTGTAGGATTTGAACCCT
TTTATTTCCTATATAAGTTGCGCGGTAATCTAAAAAACACTGGATTGGAA
GTGACATTTATTGCcagaatttgaaaatgttaaacaggaaaaagaaaaag
aaagttaaaagAAGAAAGCTTATCTGTCATACGTAGTGCAAATCTTAAAA
CATCACTGTGGCTTTCCTGGTATAGATTCCTCTTCATGTTTTATCTGAAA
TATGGCGCAAATTTTAAGGCTACGCTCTTTCTTGCTTTGCAAGGATTAAA
GATTCCCTTCTAGTCACtggctttaaactcaattgGTATAGAAGACCACC
ATTAAAATCCTATTTTAAAGATGGTGTAGCATGTAAATGGTTTTTTAAGG
CAAGGTATAGATTGGTAtaggtttttttttctgttcagTAATAACTGTTT
TTCTTTCCTTAGATTTATGAAGGAATGAAAGCATATCATGGTGTTGATGG
TCAGATACGGATGTTTCGTCCAGAATGTAACATGGATAGGTTTTGGAAAT
CAGCTCACAGGATGGCTTTACCAACGTTCAACCAAAAAGAATTGTTACAG
TGTATTCACGCACTCGTCAATTTGGAGAGAGACTGGGTTCCAAGACAAGA
AGGGAAATCATTATACATTCGCCCAACTTTGATAGGTTTGGATGTAAGTT
TTTTTTCCGTTTGAACGccaaaaggttttgtttttgtttctttatttgAA
TCCAAGCTTCGATGATCAAactattaagaacaagttaagaacatttaaag
actttttgaaTGTTCTCAAAAAACATAGTGACATCCTATATTTCAGCCTG
CTTCagacattaatgatatcaaACGTGCCCTTTTGTTTGTAATCACCTCA
CCAAGCGGCCCTTACTTCCCTGGTGGTAAGATGCGACCTGTATCTTTACT
TGCGAACCCACAACATGTGCGATCATGGTATGGTGGTATTGGAGAGGTCA
AAGCTGGTGGGTATGTTACTAATTAGTTGCCAGATATTTTTTAAGATATT
CCACTACAAATCGTATAAAATCGAAAAGTATTTTCAAGTGATTCTTCTCA
CTTTTGTACATTTAAAGGAGCGCATTCTTTAATTTGTCATTAATAAAGTC
GATATGTTACTGTTAGAATTCTATTTATTGATAATACAGTCAAGTGACCG
GTCAAAAGTAGTCTTTTGCAAACTATATTATTTAAGTACATTTTTAGAAA
CTATGGACCTACATTGTATTTACAAAGAGAAGCCATGAGTAAAGACTGTG
ATCAAGTGCTCTGGCTATATGAAGATCAGGTCAGATAcacgtttttcata
agaacacttTTATAAGTACAATACCAGggtcaaaattatcaaaaataaga
acaatttaagaccTGTGCTAGTCCTCCAAGTTGAAAGAACTGGGGataaa
gcctaaaatacctcaatttcaccCTTTtgataagaacaggataagaacaa
tttgaggttcaaaatgtcaaaaaaatgaTAGCCTCGAAGCCTTGTCAAAA
ATctactagttcttataaaaatagttATCATGTTTTTAATAACAAAACAC
AGTCTAAACAAACTAATCTAATTACCTCCACCAACCAAGAAGTGAAAGTA
GTGATAACAATTTATAGAAACTAATAATACTACCTTCTCAAAATAGATAC
AGTAAAAGCTTTATGCATGTTTCAAACTAATCAAAATCTTGATAATAATG
TCATgcagaaaacaaaaatttaaaaatggttttgtattattttccttttc
ctttaTTAGGTAACAGAAGCAGGAGGCATGAACATTTTCGTTCATTGGAT
TAATGACAATGGAGGTGTGTGGTTTTAGACTATAGAATCAAAACTAAGAT
CATTCATTCTCTGAATAGCAATAGCCGAGCGGTCAAGGTGCCATCAATCA
AAATTAGGGGCTCTCctcgctccttccaatgtttcgTTCTGTTCATAGAA
AACGGAACCCGTGTGATCCGTGGACCCTgtaaaaacaattgaaagattgt
ctaaaagtcctaaatTTCTGGGTTATCCACGTTAAACATCGACTCTGCCT
ATCTACCCTGATTCGCacattagtgaggttaagtaaatcggtaaaatcac
gacgacgaacgaaaatttaacaggctagtgagtttcaaccaatcaaattt
cgtattttcattaGCCttatacatttttcgtccgtcgtcgtgattatccc
tGTATGCTAAACCTCAGTATTATCGGGGATTCTGGATGTGCACGCATCAG
GCTACTCTAGAAGCGTAGAAAACAGATTAGACAAGGGTCTATATAGTGAT
TTTAATCCATCACGGTGATTACAAGCCATACGAATTGGTTTCACGAAAAG
AAAATTACGTATCATTTTCATACATgatgaattttgaatgaaattgaATC
GAATGATGAAACAAACAAATCAAACAtacaaagaaaatgattttataAAA
CACTGGCGTGCATTTAATACCGGTATTAACAATAAATTCTGCACCAAAAT
ATCATTCGTTGAAAAAGTACCGCATCATATATAAAAAGAATCCCTGTTGA
CACCCATCAACAACCAGAACTTTGCGTTACCTGTATTACAGGAGAGCATT
CTTCTTAGAACTAATTGGTTGAAGATATtatattttgtatcatttctaTT
TTTAGACGAAGAATTACTAACGGCACCATTGAACTCGTTGATTTTGCCAG
GAATCACCCGCCAATCATGCATAGAGATTGCTAAAGAATGGgtaaaatta
cattttatcttctgttttaaattttctagAGCTTGACATGTAGATTATGG
AAGAAGCTGAAGTCtctaatgttttgattttcaaaaagattttcactTAC
AGGTTCTGTACAGGGGTCTGATTAACTTATATATTTTAGGTGACCAGAAA
TGAGGCGTTTTCGTACCCTACATGGGTAAGCTTTAAGTTAAGACGGCCGA
CCTTCTACCCTGCCAACTTAGAAAGAAAGTTTGCAAATAaattctttgct
tgaaaaagattgaacgaagtcattgcattgatgtCAAAAAagatgcattg
actttagacagccaattTTTTTGCCCACTTAAATTCATAATTTGAATAGG
CAGCGCGAAAAATAGACCGTTTTAGAGCTAATTGAGTGAAATTCTTTTAT
CAGTAATTTAGTACTATAGTTCTGTCGAtagcaatagaccttttcataaa
ttacgtcacgttCTTCACTTGCCTTGTATTCAAAAAATTACCATGgtgta
ataaaatccgctgggagttaatcaccaatAATTGGCAATAATTTCCAAAC
GAGGCGAGTGATGTTCGTagcgtaatttatgaaaaggtctattgatgaTA
AAATTCtagaattcattttttttaggGAAATGTTCTTGTTACGGAAAAAG
AATTCACAATTCAAGAAGTCGTCAAAGCCAGTCATCAAAACAGggttaaa
aacttttattgTTAAACTCTGAAAATAATAACTATTTTGATTCAAACAAA
ACAGGCAAAAGATTGTGTAAACCAAGAAATTAAAGCGTAAaacacatttt
tcttttaaccatatttcgATCTTTATAGATCTTTATGTAATTACTTATGT
ACTTATGTATATACCCAAAACATTTTATTACCCAGagcattttaaaaatt
attccaAAATTTCAGTGGACCACTTTGACTTTGTTCGCACGTGATGgtaa
gccattctattggttgcattcaagtgttacgtcacttctaaccaatagaa
tgacttCATTCTGTTTGGGAGCAAAACGGAACTATCACGTGCGAACGTGG
TCTTAAGTGAGGAATTTAGGACCGAATGAGACGCGAACTCATCTCATAGT
ACTTATAGTAAATTTAATCATTATGCTAGAAACtcattcgaaaaaaataa
tttggacTGTTTTACTCTAGTAAATTAAATAAAGGTATCctaacttttca
tcttcagaTCAAGCACATTTTTGCTTGTGGTACAGCAGCTGTGATATGTC
CAGTCAATCGATTGGTGTACGAACCCCTTGATGGATCCAAAGAGGTTGGT
TTAATGAATTATATACTTCGTTTAAAAGCTTCTTTTACATGCGAGGCCGT
AAACTTTTGAATTgagatgaaaaaatattttgcatttcTGATAATTGACT
GAGGTATATTTTTCCAATGCCGATTGAGATCTTGTTAAGTGTTTGAATTG
TTTGAATATTCTTTTTGGCAACTATAATTGCTCTTTTCCTAGATATCCAG
AAAAATATTGAGGTTGGAATATCGGACATTTACGgctttttttcaaactg
aaaaaaagtATCTACATCACCACTGACTGTGAATAGTTCAATTTATACTG
AGAaggaaaaatcgtctgagacgagtagtttgtaaaatgtgatctgtgga
ggagatcctatttattgaaacatgaatggaaagtacacataatgttcatt
ttctaaattgctcgtctcagacaaattagtcgtctcagtataaatataAC
TAATGCGCAGAGAGATAAAATAGCGATGATATTATTTGAATCATCTCCTC
CTTATTCTACCGTCATataattaaattaattaaattaaattaccATACAT
AGGTGGTTTTAGACCATCTTCCTCTGATTGAAGAAAGTTTTTGGTCCCTT
GAGGGTCAACTTGGAGTGGGTCAACTGTACtttgaaaaattcataaattt
ctttACATCCTGAGTTAGCGATCTACACTGATAGCGAAGTACAAGGAGCA
CCATCCCTGTACTTCGCTATCAGTGTAGATCGCTAACCCAGTACAGTACA
GTTGACTCAACCCTACtatagaaaaaaattgcaagtgctttaaaaaagaa
atactctacttacaattttgcctagaAATGATAACCTTTGCTATTAAATA
CTTTAATAATTCCATATAGAACAAAAGCAATGGTTTTGCATAAATGTAGT
TTTAAATATAACCCTTTTTTTCAATAAGGATATTTATGTTAACTATATCG
CAACAAGGTCATATTTATCATCCATCTCTGAGAAGGAACTTGTTTCGTGT
AATTTCAACGTATCATTTTGTTTCCCTAACAGTCTATCCAAAATTGCTTT
TGGATGAGTATTTTCTCTCAGTGTACGTCGACTTCTCATGAACTTTAAAA
CATCATAAAACAAACCCAGGGAAACTAAAACACCTACCATACCAACAAAC
ACCTTTACAGAGATGTTATTTTCGAATAGCTCTCCAACCGTTCCGATATA
GATGGTCTCCATATGACAATGTCTTTCATACTTCGTCTGCATGTAATCAT
AAATCTCCTCTCGATTCTTATGCATGCATCTGAGCACTTTGATTAACTCT
TGACTAGGCTTACTGCTCATGGTACATCGAATGAAAAGCTGTGCTGGTAA
TGTTTGAACAATATGTAAAGGTGGACTTTGACCATCGTGACCGTGGATCT
CCTCTTGGTACCACGCAGCAATATCAGCGCTGATCATCGCTCCAAACACT
TTCTCTTCTCGCACTAAGTTCAATACTTCTTCGTAAGAGGGTGCGGGAAC
TATTTTGGCGGAATAATCTTTCGCCGCCACTTCTGCTTCGTACGAATCCT
GTAAAATCATATTCGTGATATTCAcccaccttttcgaccgtagtcacgCA
GTCCAGGCGCGtgtcacttaattatttaattaaaaTCCTAAACTCCCTAA
TCTCgattcaatccttttttgacacctttttctattgtctataggtgcga
aaaaaagactgggaagATTTTAGGGTCGTAAAAGGGACAAAAAattgccc
gcgcggcaattgccggctacggtcgaaaaggtgtatgtattaatgatgta
atgtttCGTATGGAAGCATCCCAAAAAGACCAggtgtttgccactaattt
taaatttaaacaataaaactgATGGCAAACACCCAGGCTATATTTtaggt
gcttccgtataaacaTTACGTCGTGAAGGTCACCAACTAGCAATGTAACA
CTTGGTTGATTTGACCTGACCTGATGCCGCAGGGCTTTTAGTTCCATATT
TCTTAGTTAGCGATATTAAGTTGGGAGGCGGATCAAAGATAAAATTAGGA
GGAAGATAGtctttttccccttttttcctTTTCCGTTGGGGGTGTGTAGC
TACAAGAAGAGGAGCCTTCAGCTCACCCGATGTGGTCGTAAACTAAGATA
TCAAAGAACTGACTAAGAATGAGGATTGGGAGAGCAGAGGCTTTTTAACT
AGTATCGATAATTCTTTCATGGCGATTCAGGCctcaattcaaatattttt
aattagGCTCTAAGTGTTACTTTATTACCTGTAAAACAGCCATAGATTGT
CCGTAAACACCAAGGCTTTCAACACCGGACACCGCATCTGTCATTGTGGC
CGTGATCACACAAACCAATAATATTCCTACTATCAACCAAAATAACGCTA
TAAAGCGGCCGAGTGGTGATTTGGGTGTGACGTCACCATAACCAACGGTT
GTCATAGAAACTACACTCCACCAGAATGTTGAACAAATACCTAAGTGAAA
AAATTGGGAATATTAGCCAAGATATTTGAGTTTAAAGACTCAGCTAAAAA
AATATCGTAGAATAAGAAAGATCATTGATCTTATAAACCCGAATGTCTCT
CCTATAAATCATACTTTTTTCAGTAAGTGCGTTTCAATGCCCATCTTTCA
AGCcttatttgaaaatatgaatCTGAATTTTGCTGATTAGATTATGACGT
TACCAGGAAATGACAGATTTTCCTCAATCGCAACCAAATTTCAGCTTCAT
ATGATTTAtttcaaggttttgagaattttcttcCAAGCTGTATAAAGACG
GAATTCTGCACGAatcaaaaatcatatttttagtGTAGGCGAAAGAACTA
CCATCTTTTGGCACAGGGTTCCACTGCCACTTTTCTAGcagaaaaagacc
aggactctGGATATAGTGAAAAAATGAGCTTCGGAAAAATAAGCCAtaca
tttagaaaaaaaaaacctttccaaaATCATGCCGATAATCCCGGAAATCT
GGAAATTTTCTGGAAAGTTAAATGGATCTTAGTCTGCCAAATACAATGTT
ATGGTAAGCGACGATAAGTTCCTAAGCCTAATTAATAAAATAATACCAAC
CTAAAACAAACGATCGTTCAACATTCTCATTCCAAATCCGTTCAACGAAC
CAGATGAGAATACTGAAAAAGATGGCCATAGGAATCACaatgacaaaaat
aattttagtactaGCTATTCCTCGTAAGATTTTATGTGGCAAATCGATCA
TTTTACGTGGGAGGATGAccaccattttgtttgttttcattaGGGAGAAG
GATCGAAGTGTGTTTTCATTCTCCCATTCATCACCCATCTCTTGCATCTG
TGGCGAAAGAAAGATTTCACCTTCTTTGATCCCTGTCAGATAATCTTTGC
CGTATGGGAACCCCTTCTTAATGTTTTGAATAAAGTCTTTCCTAGATTCG
AATTTCTTCACAAAATCGATTATAGTGACGTTTGGGTTTGGATTACAAAA
GGAGTTAGCTCTTGTGAATATCTTCGGAATGATTCCATCGATTTCGCCAC
GGTCGTTTGTGAACATGTATGGTTTGACTTCCCAGAATACACCTTTCATC
AGTGATGATTTGGTGGTCGTAAGGTTTTCAGCTAGCGAAAGTGTGGTGGT
CTTAGCGTTTTCAGCTAGTAATTGTGTGGCGCTCGTAGTGTTTTCAGCTT
TTGATGACGTGGTGGTGTTCATAGTGTTTTCGGCTTGTGATGACGTGGTG
GTCGTAGCGCTTTCAACCAGTAATGGTGTGGTGGTCGTAGCGTTTTCTGC
TAGTAATGGTGTCGTGGTCGTAGCGTTTTCAGCTAGTGAAGGTGTGGTGG
TTGTAGCGTTTTCTGCTTGTGATGGCGTGGTGGTCGTAGCGTTTTCTGCT
AGTGAAGGTGTGGTGGTTGTAGCGTTTTCTGCTTGTGATGGCGTGGTGGT
CGTAGCGCTTacagcttgttttgattttaaaatcaaaagttgtaacaaaa
ttGATAATAGCTTCATTATGATGGATTATCAAGTCAGTATCAAAACTTAT
ACAAGCCTCACTCATAATAACCTGATTTCCAAATTGAATTAGTCAAGAAA
TTTTATGATCATAAACTTGTATAGAGTTTATGTTTGGGAGgttgatttta
tattttatcaAGTTAAGCCAATTTATTATTGATAACTTCCAAACAAGTCT
GTCAGTCTTTTAGTAGCGGGTGATCGACtttgaattagaaaaaactacGG
AAAGTTTGTTTGAAAGGATAAGGTGACACTGTGAGCTAAGTTCAAATTTG
TTGTAAAGTAACTTGTTAATATTGATTAGAAAAATGATGAGGAAAATATa
caaatcgaaaatttttctttacCTCCAAAGAGAAAGAAATGTTAGCCTGC
TATTTTTAAACTGGTTTCTATTTCCCCATACCGATGTgtgtttttaaaag
aataaacCTTTTTCtcagaacatccaacatttttgggGCCTTCGgatatt
ttaacgttttcagTACGAACCCTAAATATaatcctaaaaatgtttttatt
ttcaccatcttgtgagtatttttgtagtattttcctaaaaaattggaaac
ttgttcttgatatttagctatcgaagccttatgttatcATATTGTTCTAA
CAATGCTGAAAATTCCTATTCTcttaaatggagaaaaaaagttttattga
gtttcattttttatttttccaggagTTAACGATTCCGTACGATATGACAG
ATGATTCGTTGATGATGAAACTTTACAATGAACTTTTCAGTATACAGGTA
TGTTCGCATTGACATTCAGAAATTCTAAAactattctttcttttttacag
TACAAAGAAAAACTGTTGACAAAACCCGCTAAATGTGTTGGGGCGTTTCC
TGGAGGTTCCGTAATgaatactttaagggcagaaactttcacaatttttc
acgatttttgccctttttcgcgaaagtttctgccaagtaaaaaattgcat
taattaaatttgcgaaagttttttcgtttttttgctatttcatacataat
caccatggtaattgtttcaatacgaggcaagtgatgttcgtgacgtaatt
tatgaaaaggtctactctattgtttaaaagtcctagattactgagCTATC
CGCGTAAAATGTCGAACTCGTCACGATGTCAAAATGAGCAATTAACTCTA
TGTACCGGAGGTGGGTACAAGGGTTGGCAAATGAGGAGTGAGGGGGGTTT
TACGAACCATAGAGGGActactttaaatttttctgatttttgtaaccctt
agaaagactttgTAAGGTTAAAAAACCGAACCCTTATTGTCAGCACATAC
CCAGTACCTCCTCCTCCCTTCACCAGGCTCTATGACTTCATGCTGGTTAA
TTTGACGAGAAAGAGATTACTTTCCTTTTTCTTCCTCTTCATTTTCCGTT
CAGTTTATCAATACCCAAGTCGGCTGGCCGTGGCTCCGTACAAACTAACG
AATAAGTCTCAGAATTTTGGGTTATCAACATAAAATCTAAACTCATCTCG
ATACCAAATTGAGTAAATTTCTGCCTTCATGTCGGTTAATTTGACGGGAC
AGAGATCCTGTATTTCTCTGAAaacccaattcaaaattttcttttcattt
ttgtagtTTGGTAAGAAGCCACACCCTTGGGTTTACAATGTGAACTAAAA
GTAAACACGTCTTGATACCAAAACGAGAGAAAGTCTCCTGGTGTTATGGT
AATACAAACGAAAAAACTTTGGTACAtattttttaactgttttttggTAG
TTCCCAGAAAGCTGATTGttgtattttgtcattttttgtagtaattttaa
tttaaggatttgcttatcaaattttcaacattttattttgaagtcttttg
tacttttttttatcatccAGTCATCCATTCCTCTTCATTGAGAAGAGCCC
AATTTTGTAGTGGGTATTTCCAACACATTCTCGCActtattttaccaaaa
aatacctaaaatatgtcatttcgttctttgatagttagggttagggtttg
tcgttctttttgtcgctttttaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034853XLOC_034853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055321-exon-scaffold_253-1491911889:125551..125888TCONS_00055321-exon-scaffold_253-1491911889:125551..125888Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:125551..125888TCONS_00055321-exon-scaffold_253-1510915933:125551..125888Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:125551..125888TCONS_00055321-exon-scaffold_253-1575043694:125551..125888Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:129027..129227TCONS_00055321-exon-scaffold_253-1491911889:129027..129227Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:129027..129227TCONS_00055321-exon-scaffold_253-1510915933:129027..129227Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:129027..129227TCONS_00055321-exon-scaffold_253-1575043694:129027..129227Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:129763..129993TCONS_00055321-exon-scaffold_253-1491911889:129763..129993Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:129763..129993TCONS_00055321-exon-scaffold_253-1510915933:129763..129993Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:129763..129993TCONS_00055321-exon-scaffold_253-1575043694:129763..129993Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:130147..130306TCONS_00055321-exon-scaffold_253-1491911889:130147..130306Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:130147..130306TCONS_00055321-exon-scaffold_253-1510915933:130147..130306Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:130147..130306TCONS_00055321-exon-scaffold_253-1575043694:130147..130306Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:130548..130629TCONS_00055321-exon-scaffold_253-1491911889:130548..130629Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:130548..130629TCONS_00055321-exon-scaffold_253-1510915933:130548..130629Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:130548..130629TCONS_00055321-exon-scaffold_253-1575043694:130548..130629Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:131110..131164TCONS_00055321-exon-scaffold_253-1491911889:131110..131164Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:131110..131164TCONS_00055321-exon-scaffold_253-1510915933:131110..131164Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:131110..131164TCONS_00055321-exon-scaffold_253-1575043694:131110..131164Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:132006..132091TCONS_00055321-exon-scaffold_253-1491911889:132006..132091Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:132006..132091TCONS_00055321-exon-scaffold_253-1510915933:132006..132091Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:132006..132091TCONS_00055321-exon-scaffold_253-1575043694:132006..132091Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:132726..132794TCONS_00055321-exon-scaffold_253-1491911889:132726..132794Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:132726..132794TCONS_00055321-exon-scaffold_253-1510915933:132726..132794Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:132726..132794TCONS_00055321-exon-scaffold_253-1575043694:132726..132794Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:133308..133394TCONS_00055321-exon-scaffold_253-1491911889:133308..133394Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:133308..133394TCONS_00055321-exon-scaffold_253-1510915933:133308..133394Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:133308..133394TCONS_00055321-exon-scaffold_253-1575043694:133308..133394Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:138123..138197TCONS_00055321-exon-scaffold_253-1491911889:138123..138197Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:138123..138197TCONS_00055321-exon-scaffold_253-1510915933:138123..138197Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:138123..138197TCONS_00055321-exon-scaffold_253-1575043694:138123..138197Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1491911889:139057..139476TCONS_00055321-exon-scaffold_253-1491911889:139057..139476Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1510915933:139057..139476TCONS_00055321-exon-scaffold_253-1510915933:139057..139476Clytia hemisphaericaexon
TCONS_00055321-exon-scaffold_253-1575043694:139057..139476TCONS_00055321-exon-scaffold_253-1575043694:139057..139476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:125551..139476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.4115	7.99897	0.764519	0.665079	2.99136	5.08138	8.1098	6.75009	8.33071	5.70261	13.924	10.3633	7.0284	6.2738	5.09001	6.5743	4.30608	5.59679	3.57015	4.69334	5.17845	5.06613	11.3219	14.9917	4.58067	4.23372	3.43451	6.75892	8.21897	8.48039
Blast
[Close]
BLAST of TCONS_00055321 vs. Swiss-Prot (Human)
Match: BCAT2 (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Homo sapiens GN=BCAT2 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.795e-92
Identity = 97/201 (48.26%), Postives = 136/201 (67.66%), Query Frame = 3 
Query:  327 NDIKSENLEIHHTKYPKEKPDP-ENLPFAKIMSDHMLVIEWFKGYGWSSPIIKTHEPLMLHPGAGALQYGSQIYEGMKAYHGVDGQIRMFRPECNMDRFWKSAHRMALPTFNQKELLQCIHALVNLERDWVPRQEGKSLYIRPTLIGLDPASDINDIKRALLFVITSPSGPYFPGGKMRPVSLLANPQHVRSWYGGIGEVK 926
            +  K+ +L++  T+ P +KP P E L F K  +DHML++EW    GW  P I+  + L LHP + +L Y  Q++EGMKA+ G D Q+R+FRP  NMDR  +SA R+ LP+F++ ELL+CI  L+ +++DWVP   G SLY+RP LIG +P+  ++   RALLFVI  P G YFPGG + PVSLLA+P  +R+W GG+G  K
Sbjct:   30 SSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEW-NDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYK 229

HSP 2 Score: 151.369 bits (381), Expect = 1.795e-92
Identity = 68/165 (41.21%), Postives = 110/165 (66.67%), Query Frame = 2 
Query:  932 NYGPTLYLQREAMSKDCDQVLWLY--EDQVTEAGGMNIFVHWINDNGDEELLTAPLNSLILPGITRQSCIEIAKEWGNVLVTEKEFTIQEVVKASHQNRIKHIFACGTAAVICPVNRLVYEPLDGSKEELTIPYDMTDDSLMMKLYNELFSIQFGKKPHPWVYNV 1420
            NYGPT+ +Q+EA+ + C+QVLWLY  + Q+TE G MNIFV+W +++G  EL+T PLN +ILPG+ RQS +++A+ WG   V E+  T++++++A  + R++ +F  GTA  +CPV+R++Y+        L IP       L+++   EL  IQ+G + H W++ V
Sbjct:  233 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYK-----DRNLHIPTMENGPELILRFQKELKEIQYGIRAHEWMFPV 392
The following BLAST results are available for this feature:
BLAST of TCONS_00055321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BCAT21.795e-9248.26Branched-chain-amino-acid aminotransferase, mitoch... [more]
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