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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055325 ID=TCONS_00055325|Name=TCONS_00055325|organism=Clytia hemisphaerica|type=transcript|length=1827bp
ttttttaagaaacacacttttaagaaacatgaggctcagaatgcctaaaa
actaagaaacatctaagaaacatgctgaggctgagaatgagaaaataaca
tttttcaattcgttttttcataagaacaaggctaattatgtcaaaaagtt
tagaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaagaa
acattgaggctgcttggtaaaactagtttcttaaaaaaaaaaacgtgtag
agaaCATAAATGAACAAATTCGAATACTTTCGAGTCTCTAAGCAAACGTG
CGGGTAAATTTTTCTCTTGCCAAGTTCCTTACGGTACGTTTATAAGAGAT
TCGAGTCTGTTTTTAGGTTTTGTGAAGGTAAAGGGAGAGTAATTAAGTGC
TTTCCAATTAAAGAGGTTTCAGTAATGAGATGGAGACAAATTCAGCCGTG
ACCGATTCAGCATACATttcttttcaccaaaataggcttgagattttgaa
aaaaaagaacgataAATGAAATTCTTTTCATCGGCTAATTATCCCGAACC
ACttagaacatttttattttacatgTAACACCAATTTTAAGTTCTGATTT
TTCACCATGTTATAGATTTCAGTTCATTTTCAGGtatacaaaacaaaaca
aactaacCAAACAAACCATGAGTCATTTTATATTAATCACCATGTTCACA
TTAACCATTTTCTACTCCGTACAATGCATTACAGCACCTAATACGGTTCT
TGTCGGTGGGAAACGTGACGTCAGCAACTTGTTAGCATCATCGAATGAAT
TATTAGAAGATGAATTAGTATCTGAATACCTGAAGAAAAGAGTCACTAGA
GAGATGAAGAGTTTAAAACATCAACTGGTAGACATCATGAATGATTATGA
AAAACTCAGACGTGGTCGCCATATGTATTGATTTTGGTTTTAATATGTAC
TGTAGGTTACTAGAATTTGTAAACATTTTGTATATATACCGTTAAAAGTC
AAAACTGGAAAAGTAtaataaaagctattttagtgagccTCTATAGTGAT
TGATATGAACAAAGATAAAGGAATTTGGAACCTTCGCTTCAAGGAAATAA
AATAATTACATTTTTCAGTTACTTCTTACTTATGTATCACATAGCACTGG
TCATTTTTTTAAGAGaacgaaagtttatgctcaaaatttttgttgagtGA
TGTTATTTTGATAGTTGACAGTTGAGAAGGACTTTTTAAAGTGGAGACCC
CTTAGTTGACGgtatttatgatatgcaccactggagagtcttctgaaaac
ttttcaaatttttcacccaATACAAtagaaacaatagaaaaagtgacgta
ttgggtggaatttttgaaaattcttggaagactctccagtggtgcatatc
ttAATCAATACTGAAGTTAAGCATacaaggataatcacgacgacggacca
AAAATGTaaaaggctagtgaaaatacgaaatttgattggttgaaactcac
tagcctgttaaattttcgttcgtcgtcgtgattttaccgatttacttaac
ctcaccaATATGGGTTTTCGAGGGAAGAAATAAAATCTCTATGCTTTCCA
AATACGAACATGTTAAATCTATTATTCTCTATGTTTGATAGAAACTATTT
GCTTTGACGACAATAAGGTTTAGTCAAAAAGATGAATCATATACCTTTTT
TGTTGATTAAGCCAATTCTTCGAGACATGAATTATTGGATGAACATGTAG
AACACGCTGAAAAAAAGTAAcaataaattattaaatttcaTTTAACTGTC
AAACCCGGTAAGACCTATGCAAAATCT Run BLAST on NCBI transcript from alignment at scaffold_253:155079..159375+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055325 ID=TCONS_00055325|Name=TCONS_00055325|organism=Clytia hemisphaerica|type=transcript|length=4297bp|location=Sequence derived from alignment at scaffold_253:155079..159375+ (Clytia hemisphaerica)
ttttttaagaaacacacttttaagaaacatgaggctcagaatgcctaaaa
actaagaaacatctaagaaacatgctgaggctgagaatgagaaaataaca
tttttcaattcgttttttcataagaacaaggctaattatgtcaaaaagtt
tagaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaagaa
acattgaggctgcttggtaaaactagtttcttaaaaaaaaaaacgtgtag
agaaCATAAATGAACAAATTCGAATACTTTCGAGTCTCTAAGCAAACGTG
CGGGTAAATTTTTCTCTTGCCAAGTTCCTTACGGTACGTTTATAAGAGAT
TCGAGTCTGTTTTTAGGTTTTGTGAAGGTAAAGGGAGAGTAATTAAGTGC
TTTCCAATTAAAGAGGTTTCAGTAATGAGATGGAGACAAATTCAGCCGTG
ACCGATTCAGCATACATttcttttcaccaaaataggcttgagattttgaa
aaaaaagaacgataAATGAAATTCTTTTCATCGGCTAATTATCCCGAACC
ACttagaacatttttattttacatgTAACACCAATTTTAAGTTCTGATTT
TTCACCATGTTATAGATTTCAGTTCATTTTCAGGtatacaaaacaaaaca
aactaacCAAACAAACCATGAGTCATTTTATATTAATCACCATGTTCACA
TTAACCATTTTCTACTCCGTACAATGCATTACAGCACCTAATACGGTTCT
TGTCGGTGGGAAACGTGACGTCAGCAACTTGTTAGCATCATCGAATGAAT
TATTAGAAGATGAATTAGTATCTGAATACCTGAAGAAAAGAGTAAGTAGA
ATCGTTATTTTTGAATTACCTTTCCCCCGGTGTCGCGGTAAATTAAGACC
CAGGAGATTAGGACTTTAAAGTCCTGATTTCCCGGAAAATATAGACCCTT
CGGGGTCCTATATGCCCGGTAAATTAAGATCGGGGAGGGCAATTAGGACT
cagtaaaaatgtttcaattctattttttttatatgaaataaTTTCACGAA
TGACTTGAATAAAGGGCTTTTTGTGCACCTTTTAGTGGATAGTTTGTtat
ctacacttttttttttataagaacgtcaaaaattttcgaagccttcggat
cttcttagttttttggatttgatgcctaaaaatgttcttaaaatgttctt
attttcagcattttttgagcattttgatgtactttcttaagaaattgcat
gtttttaagtctccaaagccttagtatgttcttagaatgttcttagattt
ttgtgcctcgaagccttatgttcttatatagtttgttcttataaaaaaaa
aacgtgtagatctAATagatcgaaggatgatgatgatgatgatgaatggA
TAGTATGGAATTAGCAGAGGTCGATTAATTCTTATTCCATTGACACAGTG
CAAATCTATTCCTTATAAGTTAAACCCCtagaaaatatgaaagaaagatt
ttccttCCTAAAACCGGGAAAACTACGaaattaatttggtctcgcCTTAC
CAACAAAAAGGCGAAAATCCAATGAATTTCGCCAGGGCTCTTGAAGTCAT
AAATCATGACTTTGAGGTCCTAATCTCCCGGAGTCTTAATTTACCGCAAC
ACCGTTAACGGGTGgggtatacatgtttttttttataagagcattcaaaa
ttttgcagcctgcggatgttcttaactttttaagatttaagcctatataa
aaatgttcctaaaatgttcttattttcaccatttcgaGAGTGTTTTTCTG
CAGTTATCTAAAAAATTGCCGGTATTTTGGAGATCGTGAAGTCTCAATTG
TCTTGCGcttgttttcaatattttggccatcgaagcctcatgttcttata
aagtatgttattataaaaaacgtgtactttgaATGAatcaaccaaatcaa
accaaatcTACTTTGAACTAACAAACTCAAGTTTAAACTTTCTGTGATTT
TTAGCAAGAAAATAATAGACCTTCAGAGAACCAATCTTCATCCAtgcttt
tttttcttaaaaactacttttttttctCTACTAGGTCACTAGAGAGATGA
AGAGTTTAAAACATCAACTGGTAGACATCATGAATGATTATGAAAAACTC
AGACGTGGTCGCCATATGTATTGATTTTGGTTTTAATATGTACTGTAGGT
TACTAGAATTTGTAAACATTTTGTAcacaataaattgaagttgagataag
aattgtttgatactcaaagtttcacgcaacttttcgtcacgatcttcagt
caaaaattctatACAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTTTGGATTGGTTGGCTTATACGAAAGTTCGACGTTGTAGCCGCTTT
CTTTCAACGCTTTCTCGTACGGTTTTTTGGCTTCGGTGAAGATATGTTCG
TTGGATGAGTGATTTGACAGTCGTTGTTCGATCGTTTTGGGTATTTGCCT
GATCACGTTTGGAGGGTGGTTTGATTGAGTATTTATATATTGAAGTTTGT
TGTCTGGTTTCAGGTAAGGCTTGAATGAACCATCTTCAAGGTTAAGAGTA
ATATCTAAATAATTGACGATTGTCTTATTGCAGCACTCAATAACATTTTG
TATATATACCGTTAAAAGTCAAAACTGGAAAAGTAtaataaaagctattt
tagtgagccTCTATAGTGATTGATATGAACAAAGATAAAGGAATTTGGAA
CCTTCGCTTCAAGGAAATAAAATAATTACATTTTTCAGTTACTTCTTACT
TATGTATCACATAGCACTGGTCATTTTTTTAAGAGaacgaaagtttatgc
tcaaaatttttgttgagtGATGTTATTTTGATAGTTGACAGTTGAGAAGG
ACTTTTTAAAGTGGAGACCCCTTAGTTGACGgtatttatgatatgcacca
ctggagagtcttctgaaaacttttcaaatttttcacccaATACAAtagaa
acaatagaaaaagtgacgtattgggtggaatttttgaaaattcttggaag
actctccagtggtgcatatcttAATCAATACTGAAGTTAAGCATacaagg
ataatcacgacgacggaccaAAAATGTaaaaggctagtgaaaatacgaaa
tttgattggttgaaactcactagcctgttaaattttcgttcgtcgtcgtg
attttaccgatttacttaacctcaccaATATGGGTTTTCGAGGGAAGAAA
TAAAATCTCTATGCTTTCCAAATACGAACATGTTAAATCTATTATTCTCT
ATGTTTGATAGAAACTATTTGCTTTGACGACAATAAGGTTTAGTCAAAAA
GATGAATCATATACCTTTTTTGTTGATTAAGCCAATTCTTCGAGACATGA
ATTATTGGATGAACATGTAGAACACGCTGAAAAAAAGTAAcaataaatta
ttaaatttcaTTTAACTGTCAAACCCGGTAAGACCTATGCAAAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055325-exon-scaffold_253-1491911889:155079..155919 | TCONS_00055325-exon-scaffold_253-1491911889:155079..155919 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1510915933:155079..155919 | TCONS_00055325-exon-scaffold_253-1510915933:155079..155919 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1575043694:155079..155919 | TCONS_00055325-exon-scaffold_253-1575043694:155079..155919 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1491911889:157163..157295 | TCONS_00055325-exon-scaffold_253-1491911889:157163..157295 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1510915933:157163..157295 | TCONS_00055325-exon-scaffold_253-1510915933:157163..157295 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1575043694:157163..157295 | TCONS_00055325-exon-scaffold_253-1575043694:157163..157295 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1491911889:158523..159375 | TCONS_00055325-exon-scaffold_253-1491911889:158523..159375 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1510915933:158523..159375 | TCONS_00055325-exon-scaffold_253-1510915933:158523..159375 | Clytia hemisphaerica | exon |
| TCONS_00055325-exon-scaffold_253-1575043694:158523..159375 | TCONS_00055325-exon-scaffold_253-1575043694:158523..159375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:155079..159375 + |
Blast
The following BLAST results are available for this feature:
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